RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 MRPL54Q6P161 138 aaKnown RBP4.6□□□□□ -1.67
NEK3-201ENST00000550331 KRTAP11-1Q8IUC1 163 aa4.6□□□□□ -1.67
NEK3-201ENST00000550331 ORMDL3Q8N138 153 aa4.6□□□□□ -1.67
NEK3-201ENST00000550331 C9orf118A6NHY6 69 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 NDUFC2-KCTD14E9PQ53 114 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 M0QXV9 152 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 KRTAP1-4P0C5Y4 121 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 RAB5AP20339 215 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 GAGE2EQ4V326 116 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 LINC00242Q5T6M2 205 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 ATP5L2Q7Z4Y8 100 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 KRTAP7-1Q8IUC3 87 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 LINC01561Q8N1V8 128 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 GAGE2DQ9UEU5 116 aa4.59□□□□□ -1.67
NEK3-201ENST00000550331 IGLV4-3A0A075B6K6 122 aa4.58□□□□□ -1.68
NEK3-201ENST00000550331 RPL13AP40429 203 aaKnown RBP4.58□□□□□ -1.68
NEK3-201ENST00000550331 UBE2D1P51668 147 aa4.58□□□□□ -1.68
NEK3-201ENST00000550331 UBE2BP63146 152 aa4.58□□□□□ -1.68
NEK3-201ENST00000550331 TEX43Q6ZNM6 134 aa4.58□□□□□ -1.68
NEK3-201ENST00000550331 TMEM141Q96I45 108 aa4.58□□□□□ -1.68
NEK3-201ENST00000550331 PACRGQ96M98 296 aaPredicted RBP4.58□□□□□ -1.68
NEK3-201ENST00000550331 PRELID3AQ96N28 172 aa4.58□□□□□ -1.68
NEK3-201ENST00000550331 LAMTOR2Q9Y2Q5 125 aa4.58□□□□□ -1.68
NEK3-201ENST00000550331 NPSP0C0P6 89 aa4.57□□□□□ -1.68
NEK3-201ENST00000550331 C9orf129Q5T035 196 aaKnown RBP4.57□□□□□ -1.68
NEK3-201ENST00000550331 C2orf82Q6UX34 121 aa4.57□□□□□ -1.68
NEK3-201ENST00000550331 Q6ZN92 141 aa4.57□□□□□ -1.68
NEK3-201ENST00000550331 TMEM136Q6ZRR5 245 aa4.57□□□□□ -1.68
NEK3-201ENST00000550331 C2orf88Q9BSF0 95 aa4.57□□□□□ -1.68
NEK3-201ENST00000550331 CARHSP1Q9Y2V2 147 aaKnown RBP4.57□□□□□ -1.68
NEK3-201ENST00000550331 MAP1LC3AQ9H492 121 aa4.56□□□□□ -1.68
NEK3-201ENST00000550331 CYSLTR1Q9Y271 337 aa4.56□□□□□ -1.68
NEK3-201ENST00000550331 K7EMI3 77 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 NUPR1O60356 82 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 ZNF861PO60384 105 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 PRSS2P07478 247 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 CKS1BP61024 79 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 C2orf66Q6UXQ4 117 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 LINC00173Q6ZV60 143 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 FAM19A3Q7Z5A8 133 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 Q8IZM0 81 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 Q8N8P6 123 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 AMELXQ99217 191 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 VCX2Q9H322 139 aa4.55□□□□□ -1.68
NEK3-201ENST00000550331 LOC389332A0A1B0GUA5 103 aa4.54□□□□□ -1.68
NEK3-201ENST00000550331 IGIPA6NJ69 53 aa4.54□□□□□ -1.68
NEK3-201ENST00000550331 SEC11AP67812 179 aa4.54□□□□□ -1.68
NEK3-201ENST00000550331 PRR4Q16378 134 aa4.54□□□□□ -1.68
NEK3-201ENST00000550331 ORMDL2Q53FV1 153 aa4.54□□□□□ -1.68
NEK3-201ENST00000550331 LBHQ53QV2 105 aaPredicted RBP4.54□□□□□ -1.68
NEK3-201ENST00000550331 C6orf226Q5I0X4 101 aa4.54□□□□□ -1.68
NEK3-201ENST00000550331 PAPPA-AS1Q5QFB9 102 aa4.54□□□□□ -1.68
NEK3-201ENST00000550331 C22orf24Q9Y442 160 aa4.54□□□□□ -1.68
NEK3-201ENST00000550331 GAGE10A6NGK3 116 aa4.53□□□□□ -1.68
NEK3-201ENST00000550331 F8VRH5 84 aa4.53□□□□□ -1.68
NEK3-201ENST00000550331 G0S2P27469 103 aa4.53□□□□□ -1.68
NEK3-201ENST00000550331 HERVK_113P63121 156 aa4.53□□□□□ -1.68
NEK3-201ENST00000550331 PNRC1Q12796 327 aaPredicted RBP4.53□□□□□ -1.68
NEK3-201ENST00000550331 ZC2HC1BQ5TFG8 222 aa4.53□□□□□ -1.68
NEK3-201ENST00000550331 ALKBH7Q9BT30 221 aaPredicted RBP4.53□□□□□ -1.68
NEK3-201ENST00000550331 TOMM7Q9P0U1 55 aa4.53□□□□□ -1.68
NEK3-201ENST00000550331 TP73-AS1Q9UF72 201 aa4.53□□□□□ -1.68
NEK3-201ENST00000550331 CXCL5P42830 114 aa4.52□□□□□ -1.69
NEK3-201ENST00000550331 LINC00469Q8N7U9 141 aa4.52□□□□□ -1.69
NEK3-201ENST00000550331 TIMM17AQ99595 171 aa4.52□□□□□ -1.69
NEK3-201ENST00000550331 XAGE1AQ9HD64 81 aa4.52□□□□□ -1.69
NEK3-201ENST00000550331 NXT2Q9NPJ8 142 aaKnown RBP4.52□□□□□ -1.69
NEK3-201ENST00000550331 CDKN2A-AS1Q9UH64 79 aa4.52□□□□□ -1.69
NEK3-201ENST00000550331 BCE1O60756 84 aa4.51□□□□□ -1.69
NEK3-201ENST00000550331 MT-ND4LP03901 98 aa4.51□□□□□ -1.69
NEK3-201ENST00000550331 RPL28P46779 137 aaKnown RBP4.51□□□□□ -1.69
NEK3-201ENST00000550331 MRPL55Q7Z7F7 128 aaKnown RBP4.51□□□□□ -1.69
NEK3-201ENST00000550331 CTDSP1Q9GZU7 261 aa4.51□□□□□ -1.69
NEK3-201ENST00000550331 GEMIN7Q9H840 131 aaKnown RBP4.51□□□□□ -1.69
NEK3-201ENST00000550331 MUC17Q685J3 4493 aa4.5□□□□□ -1.69
NEK3-201ENST00000550331 A0A087X002 238 aa4.49□□□□□ -1.69
NEK3-201ENST00000550331 A0A1B0GVG6 124 aa4.49□□□□□ -1.69
NEK3-201ENST00000550331 SMIM1B2RUZ4 78 aa4.49□□□□□ -1.69
NEK3-201ENST00000550331 CRYGAP11844 174 aa4.49□□□□□ -1.69
NEK3-201ENST00000550331 PDZD11Q5EBL8 140 aa4.49□□□□□ -1.69
NEK3-201ENST00000550331 ERASQ7Z444 233 aa4.49□□□□□ -1.69
NEK3-201ENST00000550331 TOMM6Q96B49 74 aa4.49□□□□□ -1.69
NEK3-201ENST00000550331 IGLV5-37A0A075B6J1 123 aa4.48□□□□□ -1.69
NEK3-201ENST00000550331 IGLV5-45A0A087WSX0 123 aa4.48□□□□□ -1.69
NEK3-201ENST00000550331 TINCRA0A1B0GVN0 87 aa4.48□□□□□ -1.69
NEK3-201ENST00000550331 LINC01549A6NIU2 74 aa4.48□□□□□ -1.69
NEK3-201ENST00000550331 TSPAN13O95857 204 aa4.48□□□□□ -1.69
NEK3-201ENST00000550331 PET117Q6UWS5 81 aa4.48□□□□□ -1.69
NEK3-201ENST00000550331 TYMSOSQ8TAI1 123 aa4.48□□□□□ -1.69
NEK3-201ENST00000550331 KRTAP13-1Q8IUC0 172 aa4.47□□□□□ -1.69
NEK3-201ENST00000550331 COX7B2Q8TF08 81 aa4.47□□□□□ -1.69
NEK3-201ENST00000550331 LINC00167Q96N53 147 aa4.47□□□□□ -1.69
NEK3-201ENST00000550331 SCGB3A1Q96QR1 104 aa4.47□□□□□ -1.69
NEK3-201ENST00000550331 TRAV9-1A0A075B6T8 112 aa4.46□□□□□ -1.7
NEK3-201ENST00000550331 RPL37AP8A6NKH3 93 aa4.46□□□□□ -1.7
NEK3-201ENST00000550331 FAM229BQ4G0N7 80 aa4.46□□□□□ -1.7
NEK3-201ENST00000550331 LINC01546A6NGU7 62 aa4.45□□□□□ -1.7
NEK3-201ENST00000550331 ADCYAP1P18509 176 aa4.45□□□□□ -1.7
NEK3-201ENST00000550331 UBE2AP49459 152 aa4.45□□□□□ -1.7
NEK3-201ENST00000550331 RAB14P61106 215 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms