RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 C2orf88Q9BSF0 95 aa8.51□□□□□ -1.05
CDX2-202ENST00000548877 CSDC2Q9Y534 153 aaKnown RBP8.51□□□□□ -1.05
CDX2-202ENST00000548877 IGLV4-3A0A075B6K6 122 aa8.5□□□□□ -1.05
CDX2-202ENST00000548877 TRBV25-1A0A075B6N4 114 aa8.5□□□□□ -1.05
CDX2-202ENST00000548877 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.5□□□□□ -1.05
CDX2-202ENST00000548877 M0R143 59 aa8.5□□□□□ -1.05
CDX2-202ENST00000548877 CHTF8P0CG12 524 aa8.5□□□□□ -1.05
CDX2-202ENST00000548877 RBX1P62877 108 aa8.5□□□□□ -1.05
CDX2-202ENST00000548877 ZC2HC1BQ5TFG8 222 aa8.5□□□□□ -1.05
CDX2-202ENST00000548877 NTM-AS1Q6ZSK4 140 aa8.5□□□□□ -1.05
CDX2-202ENST00000548877 C7orf33Q8WU49 177 aa8.5□□□□□ -1.05
CDX2-202ENST00000548877 CHCHD5Q9BSY4 110 aa8.5□□□□□ -1.05
CDX2-202ENST00000548877 TMEM243Q9BU79 118 aa8.5□□□□□ -1.05
CDX2-202ENST00000548877 UBE2L6O14933 153 aa8.49□□□□□ -1.05
CDX2-202ENST00000548877 LINC00269Q8N2A0 174 aa8.49□□□□□ -1.05
CDX2-202ENST00000548877 STPG4Q8N801 248 aa8.49□□□□□ -1.05
CDX2-202ENST00000548877 DPH3Q96FX2 82 aa8.49□□□□□ -1.05
CDX2-202ENST00000548877 AMELXQ99217 191 aa8.49□□□□□ -1.05
CDX2-202ENST00000548877 UBE2D4Q9Y2X8 147 aa8.49□□□□□ -1.05
CDX2-202ENST00000548877 TRAV8-4A0A0B4J246 113 aa8.48□□□□□ -1.05
CDX2-202ENST00000548877 ZNF25P17030 456 aaPredicted RBP8.48□□□□□ -1.05
CDX2-202ENST00000548877 NMUP48645 174 aa8.48□□□□□ -1.05
CDX2-202ENST00000548877 PRR3P79522 188 aaKnown RBP8.48□□□□□ -1.05
CDX2-202ENST00000548877 ANKRD39Q53RE8 183 aa8.48□□□□□ -1.05
CDX2-202ENST00000548877 TMEM101Q96IK0 257 aa8.48□□□□□ -1.05
CDX2-202ENST00000548877 C11orf86A6NJI1 115 aa8.47□□□□□ -1.05
CDX2-202ENST00000548877 SEC11AP67812 179 aa8.47□□□□□ -1.05
CDX2-202ENST00000548877 AMMECR1LQ6DCA0 310 aa8.47□□□□□ -1.05
CDX2-202ENST00000548877 SPINK6Q6UWN8 80 aa8.47□□□□□ -1.05
CDX2-202ENST00000548877 BOD1L2Q8IYS8 172 aa8.47□□□□□ -1.05
CDX2-202ENST00000548877 LPAP08519 4548 aa8.47□□□□□ -1.05
CDX2-202ENST00000548877 IGLV4-69A0A075B6H9 119 aa8.46□□□□□ -1.06
CDX2-202ENST00000548877 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.46□□□□□ -1.06
CDX2-202ENST00000548877 IGKV2-29A2NJV5 120 aaPredicted RBP8.46□□□□□ -1.06
CDX2-202ENST00000548877 E9PLD3 99 aa8.46□□□□□ -1.06
CDX2-202ENST00000548877 CTAG1AP78358 180 aa8.46□□□□□ -1.06
CDX2-202ENST00000548877 REG3AQ06141 175 aa8.46□□□□□ -1.06
CDX2-202ENST00000548877 CLPSL2Q6UWE3 100 aa8.46□□□□□ -1.06
CDX2-202ENST00000548877 OR5A1Q8NGJ0 315 aa8.46□□□□□ -1.06
CDX2-202ENST00000548877 FGF6P10767 208 aa8.45□□□□□ -1.06
CDX2-202ENST00000548877 REG3GQ6UW15 175 aa8.45□□□□□ -1.06
CDX2-202ENST00000548877 A0A1B0GUV1 79 aa8.44□□□□□ -1.06
CDX2-202ENST00000548877 TINCRA0A1B0GVN0 87 aa8.44□□□□□ -1.06
CDX2-202ENST00000548877 GAGE6Q13070 117 aa8.44□□□□□ -1.06
CDX2-202ENST00000548877 SRSF9Q13242 221 aaKnown RBP eCLIP8.44□□□□□ -1.06
CDX2-202ENST00000548877 TMEM170BQ5T4T1 132 aa8.44□□□□□ -1.06
CDX2-202ENST00000548877 HIGD1BQ9P298 99 aa8.44□□□□□ -1.06
CDX2-202ENST00000548877 IGLV10-54A0A075B6I4 117 aa8.43□□□□□ -1.06
CDX2-202ENST00000548877 GEMIN7Q9H840 131 aaKnown RBP8.43□□□□□ -1.06
CDX2-202ENST00000548877 H3BRM9 83 aa8.42□□□□□ -1.06
CDX2-202ENST00000548877 COX6A2Q02221 97 aa8.42□□□□□ -1.06
CDX2-202ENST00000548877 Q6ZUT4 128 aa8.42□□□□□ -1.06
CDX2-202ENST00000548877 PLEKHB2Q96CS7 222 aa8.42□□□□□ -1.06
CDX2-202ENST00000548877 OPRPNQ99935 248 aaPredicted RBP8.42□□□□□ -1.06
CDX2-202ENST00000548877 SNHG12Q9BXW3 62 aa8.42□□□□□ -1.06
CDX2-202ENST00000548877 UBE2D1P51668 147 aa8.41□□□□□ -1.06
CDX2-202ENST00000548877 HERVK_113P63121 156 aa8.41□□□□□ -1.06
CDX2-202ENST00000548877 COL5A1-AS1Q5SY13 56 aa8.41□□□□□ -1.06
CDX2-202ENST00000548877 PCP2Q8IVA1 136 aa8.41□□□□□ -1.06
CDX2-202ENST00000548877 C15orf56Q8N910 161 aa8.41□□□□□ -1.06
CDX2-202ENST00000548877 KRTAP9-2Q9BYQ4 174 aa8.41□□□□□ -1.06
CDX2-202ENST00000548877 CDC42SE2Q9NRR3 84 aa8.41□□□□□ -1.06
CDX2-202ENST00000548877 IGKV2D-26A0A0A0MRZ7 120 aa8.4□□□□□ -1.06
CDX2-202ENST00000548877 MYMXA0A1B0GTQ4 84 aa8.4□□□□□ -1.06
CDX2-202ENST00000548877 ZNF22P17026 224 aaPredicted RBP8.4□□□□□ -1.06
CDX2-202ENST00000548877 HSD52Q0P140 79 aa8.4□□□□□ -1.06
CDX2-202ENST00000548877 FAM19A3Q7Z5A8 133 aa8.4□□□□□ -1.06
CDX2-202ENST00000548877 FAM104AQ969W3 186 aa8.4□□□□□ -1.06
CDX2-202ENST00000548877 IGLV4-60A0A075B6I1 120 aa8.39□□□□□ -1.07
CDX2-202ENST00000548877 TMEM223A0PJW6 202 aa8.39□□□□□ -1.07
CDX2-202ENST00000548877 LEPROTO15243 131 aa8.39□□□□□ -1.07
CDX2-202ENST00000548877 LGALS3P17931 250 aaKnown RBP8.39□□□□□ -1.07
CDX2-202ENST00000548877 TAL2Q16559 108 aa8.39□□□□□ -1.07
CDX2-202ENST00000548877 CFAP161Q6P656 301 aa8.39□□□□□ -1.07
CDX2-202ENST00000548877 C2orf91Q6ZV80 131 aa8.39□□□□□ -1.07
CDX2-202ENST00000548877 CCL25O15444 150 aa8.38□□□□□ -1.07
CDX2-202ENST00000548877 BATFQ16520 125 aa8.38□□□□□ -1.07
CDX2-202ENST00000548877 LINC00469Q8N7U9 141 aa8.38□□□□□ -1.07
CDX2-202ENST00000548877 IGLV5-45A0A087WSX0 123 aa8.37□□□□□ -1.07
CDX2-202ENST00000548877 ZNF815PA8K554 130 aa8.37□□□□□ -1.07
CDX2-202ENST00000548877 J3QQQ9 107 aa8.37□□□□□ -1.07
CDX2-202ENST00000548877 HINT1P49773 126 aaPredicted RBP8.37□□□□□ -1.07
CDX2-202ENST00000548877 IGHV1-58A0A0C4DH39 117 aa8.36□□□□□ -1.07
CDX2-202ENST00000548877 IGKV2-24A0A0C4DH68 120 aa8.36□□□□□ -1.07
CDX2-202ENST00000548877 RNASE13Q5GAN3 156 aaKnown RBP8.36□□□□□ -1.07
CDX2-202ENST00000548877 SCGB1D4Q6XE38 83 aa8.36□□□□□ -1.07
CDX2-202ENST00000548877 Q6ZRP5 223 aa8.36□□□□□ -1.07
CDX2-202ENST00000548877 LINC00474Q9P2X8 69 aa8.36□□□□□ -1.07
CDX2-202ENST00000548877 A0A096LNI7 61 aa8.35□□□□□ -1.07
CDX2-202ENST00000548877 GVQW2A0A096LPI5 108 aaPredicted RBP8.35□□□□□ -1.07
CDX2-202ENST00000548877 A6NDN8 102 aa8.35□□□□□ -1.07
CDX2-202ENST00000548877 BVES-AS1Q5T3Y7 98 aa8.35□□□□□ -1.07
CDX2-202ENST00000548877 MUC2Q02817 5179 aa8.34□□□□□ -1.07
CDX2-202ENST00000548877 TRAV13-1A0A0B4J241 112 aa8.34□□□□□ -1.07
CDX2-202ENST00000548877 LINC00242Q5T6M2 205 aa8.34□□□□□ -1.07
CDX2-202ENST00000548877 ORAOV1Q8WV07 137 aa8.34□□□□□ -1.07
CDX2-202ENST00000548877 PKIGQ9Y2B9 76 aa8.34□□□□□ -1.07
CDX2-202ENST00000548877 GAGE12HA6NDE8 117 aa8.33□□□□□ -1.08
CDX2-202ENST00000548877 SS18Q15532 418 aa8.32□□□□□ -1.08
CDX2-202ENST00000548877 HIGD2BQ4VC39 106 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms