RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-211	ENST00000546304	COA6	Q5JTJ3	125 aa	Known RBP	4.15	□□□□□ -1.75
PRKDC-211	ENST00000546304	LINC00242	Q5T6M2	205 aa		4.15	□□□□□ -1.75
PRKDC-211	ENST00000546304	SPATA12	Q7Z6I5	190 aa		4.15	□□□□□ -1.75
PRKDC-211	ENST00000546304	C15orf56	Q8N910	161 aa		4.15	□□□□□ -1.75
PRKDC-211	ENST00000546304	IFI27L1	Q96BM0	104 aa		4.15	□□□□□ -1.75
PRKDC-211	ENST00000546304	HSPG2	P98160	4391 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	GVQW2	A0A096LPI5	108 aa	Predicted RBP	4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	IGHV1-58	A0A0C4DH39	117 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	hDV102S1	A0JD36	115 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	LEPROTL1	O95214	131 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	NDUFA6	P56556	154 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	HERVK_113	P63121	156 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	SEC11A	P67812	179 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	FAM19A3	Q7Z5A8	133 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	C5orf38	Q86SI9	138 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	CHAC1	Q9BUX1	264 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	CST9L	Q9H4G1	147 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	GEMIN7	Q9H840	131 aa	Known RBP	4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	HSPB8	Q9UJY1	196 aa		4.14	□□□□□ -1.75
PRKDC-211	ENST00000546304	IGLV4-69	A0A075B6H9	119 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304		A0A087WZ39	114 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304	IGLV5-52	A0A0A0MRZ9	124 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304		A0A0J9YXV3	536 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304	TINCR	A0A1B0GVN0	87 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304	PRSS1	P07477	247 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304	IGLC3	P0DOY3	106 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304	FABP4	P15090	132 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304	SPAG11B	Q08648	103 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304	HIGD2B	Q4VC39	106 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304	LINC00469	Q8N7U9	141 aa		4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304	PACRG	Q96M98	296 aa	Predicted RBP	4.13	□□□□□ -1.75
PRKDC-211	ENST00000546304	IGLV5-45	A0A087WSX0	123 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	TRAV12-1	A0A0B4J245	112 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	C16orf90	A8MZG2	172 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304		F8VRH5	84 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	APOM	O95445	188 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	FUS	P35637	526 aa	Known RBP eCLIP	4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	COX6A2	Q02221	97 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	OR10D4P	Q8NGN7	298 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	MPLKIP	Q8TAP9	179 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	ORAOV1	Q8WV07	137 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	CDKN2A-AS1	Q9UH64	79 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	FAT1	Q14517	4588 aa		4.12	□□□□□ -1.75
PRKDC-211	ENST00000546304	HERC2	O95714	4834 aa		4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304	IGHV3-64	A0A075B6Q5	118 aa		4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304	C11orf86	A6NJI1	115 aa		4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304	SMIM1	B2RUZ4	78 aa		4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304		H3BRM9	83 aa		4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304	ZNF22	P17026	224 aa	Predicted RBP	4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304	SNRPE	P62304	92 aa	Known RBP	4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304	CNBP	P62633	177 aa	Known RBP	4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304	LINC01561	Q8N1V8	128 aa		4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304	MAP1LC3C	Q9BXW4	147 aa		4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304	MRPL35	Q9NZE8	188 aa	Known RBP	4.11	□□□□□ -1.75
PRKDC-211	ENST00000546304	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	4.1	□□□□□ -1.75
PRKDC-211	ENST00000546304	SPINK8	P0C7L1	97 aa		4.1	□□□□□ -1.75
PRKDC-211	ENST00000546304	PLN	P26678	52 aa		4.1	□□□□□ -1.75
PRKDC-211	ENST00000546304	HIST3H2BB	Q8N257	126 aa		4.1	□□□□□ -1.75
PRKDC-211	ENST00000546304	LINC00526	Q96FQ7	95 aa		4.1	□□□□□ -1.75
PRKDC-211	ENST00000546304	CARD19	Q96LW7	228 aa		4.1	□□□□□ -1.75
PRKDC-211	ENST00000546304	SYS1-DBNDD2	H3BUS1	97 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	DPM2	O94777	84 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	PRSS2	P07478	247 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	S100A2	P29034	98 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	KRTDAP	P60985	99 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	LINC01620	Q4KN68	170 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	TMEM170B	Q5T4T1	132 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304		Q8IZM0	81 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	C2orf48	Q96LS8	159 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	CAMK2N2	Q96S95	79 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	HIST1H2BL	Q99880	126 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	PMCHL2	Q9BQD1	86 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	TOMM7	Q9P0U1	55 aa		4.09	□□□□□ -1.75
PRKDC-211	ENST00000546304	IGLV5-39	A0A0G2JS06	123 aa		4.08	□□□□□ -1.76
PRKDC-211	ENST00000546304	PRY	O14603	147 aa		4.08	□□□□□ -1.76
PRKDC-211	ENST00000546304	NDUFA1	O15239	70 aa		4.08	□□□□□ -1.76
PRKDC-211	ENST00000546304	C3orf79	P0CE67	100 aa		4.08	□□□□□ -1.76
PRKDC-211	ENST00000546304	KRTAP10-1	P60331	282 aa		4.08	□□□□□ -1.76
PRKDC-211	ENST00000546304	SYCN	Q0VAF6	134 aa		4.08	□□□□□ -1.76
PRKDC-211	ENST00000546304	KIAA0087	Q14695	138 aa		4.08	□□□□□ -1.76
PRKDC-211	ENST00000546304		Q6ZRU5	148 aa		4.08	□□□□□ -1.76
PRKDC-211	ENST00000546304	C9orf163	Q8N9P6	203 aa		4.08	□□□□□ -1.76
PRKDC-211	ENST00000546304	TMEM223	A0PJW6	202 aa		4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	C20orf202	A1L168	122 aa		4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	IGKC	P01834	107 aa		4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	CXCL5	P42830	114 aa		4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	CKS1B	P61024	79 aa		4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	LBH	Q53QV2	105 aa	Predicted RBP	4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	LINC01545	Q5VT33	79 aa		4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	C2orf82	Q6UX34	121 aa		4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	COX7B2	Q8TF08	81 aa		4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	PKIG	Q9Y2B9	76 aa		4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	CBY1	Q9Y3M2	126 aa		4.07	□□□□□ -1.76
PRKDC-211	ENST00000546304	TRBV30	A0A0K0K1B3	111 aa		4.06	□□□□□ -1.76
PRKDC-211	ENST00000546304	HERVK_113	P61574	105 aa		4.06	□□□□□ -1.76
PRKDC-211	ENST00000546304	UNQ6190/PRO20217	Q6UXQ8	127 aa		4.06	□□□□□ -1.76
PRKDC-211	ENST00000546304		Q6ZSA8	131 aa		4.06	□□□□□ -1.76
PRKDC-211	ENST00000546304	C6orf48	Q9UBA6	75 aa		4.06	□□□□□ -1.76
PRKDC-211	ENST00000546304	VPS13B	Q7Z7G8	4022 aa		4.05	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms