RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 CD164L2Q6UWJ8 174 aa4.26□□□□□ -1.73
SYNE1-239ENST00000545694 MUC7Q8TAX7 377 aa4.26□□□□□ -1.73
SYNE1-239ENST00000545694 A0A1W2PPM0 123 aa4.25□□□□□ -1.73
SYNE1-239ENST00000545694 GAGE10A6NGK3 116 aa4.25□□□□□ -1.73
SYNE1-239ENST00000545694 APOMO95445 188 aa4.25□□□□□ -1.73
SYNE1-239ENST00000545694 MIAQ16674 131 aa4.25□□□□□ -1.73
SYNE1-239ENST00000545694 LYPD5Q6UWN5 251 aa4.25□□□□□ -1.73
SYNE1-239ENST00000545694 Q8IZM0 81 aa4.25□□□□□ -1.73
SYNE1-239ENST00000545694 COX7B2Q8TF08 81 aa4.25□□□□□ -1.73
SYNE1-239ENST00000545694 ZNF625Q96I27 306 aaPredicted RBP4.25□□□□□ -1.73
SYNE1-239ENST00000545694 LITAFQ99732 161 aa4.25□□□□□ -1.73
SYNE1-239ENST00000545694 Q9H8V8 135 aa4.25□□□□□ -1.73
SYNE1-239ENST00000545694 IGHV3-64A0A075B6Q5 118 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 DEFB131BA0A096LNP1 70 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 A0A0J9YWU9 116 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 IBA57-AS1B1ANH7 110 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 IGLL5B9A064 214 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 H3BUT2 72 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 K7EIL1 84 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 COX7A2LO14548 114 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 ANGP03950 147 aaKnown RBP4.24□□□□□ -1.73
SYNE1-239ENST00000545694 PRSS2P07478 247 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 HTN3P15516 51 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 REG3AQ06141 175 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 Q6ZTC4 211 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 RAB37Q96AX2 223 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 PRR34Q9NV39 138 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 PRO1854Q9UHT4 67 aa4.24□□□□□ -1.73
SYNE1-239ENST00000545694 HUWE1Q7Z6Z7 4374 aaKnown RBP4.23□□□□□ -1.73
SYNE1-239ENST00000545694 TRBV20-1A0A075B6N2 111 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 F8WDY8 70 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 K7EP13 123 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 K7EP34 96 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 CRPP02741 224 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 COX17Q14061 63 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 MEIG1Q5JSS6 88 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 MUSTN1Q8IVN3 82 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 LINC00269Q8N2A0 174 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 RETNQ9HD89 108 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 KLK5Q9Y337 293 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-239ENST00000545694 STAB2Q8WWQ8 2551 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 DNAH9Q9NYC9 4486 aa4.23□□□□□ -1.73
SYNE1-239ENST00000545694 A4D1N5 150 aa4.22□□□□□ -1.73
SYNE1-239ENST00000545694 NHLRC4P0CG21 123 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-239ENST00000545694 CFC1BP0CG36 223 aa4.22□□□□□ -1.73
SYNE1-239ENST00000545694 CFC1P0CG37 223 aa4.22□□□□□ -1.73
SYNE1-239ENST00000545694 MALP21145 153 aa4.22□□□□□ -1.73
SYNE1-239ENST00000545694 C6orf226Q5I0X4 101 aa4.22□□□□□ -1.73
SYNE1-239ENST00000545694 DEFB121Q5J5C9 76 aa4.22□□□□□ -1.73
SYNE1-239ENST00000545694 LINC01556Q5JQF7 62 aa4.22□□□□□ -1.73
SYNE1-239ENST00000545694 CHCHD10Q8WYQ3 142 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-239ENST00000545694 ERG28Q9UKR5 140 aa4.22□□□□□ -1.73
SYNE1-239ENST00000545694 SPCS1Q9Y6A9 102 aa4.22□□□□□ -1.73
SYNE1-239ENST00000545694 IGKV3OR2-268A0A0C4DH90 116 aa4.21□□□□□ -1.74
SYNE1-239ENST00000545694 LOC107984156A0A0G2JMH3 177 aa4.21□□□□□ -1.74
SYNE1-239ENST00000545694 COX6CP09669 75 aa4.21□□□□□ -1.74
SYNE1-239ENST00000545694 XCL1P47992 114 aa4.21□□□□□ -1.74
SYNE1-239ENST00000545694 NANOS2P60321 138 aaKnown RBP4.21□□□□□ -1.74
SYNE1-239ENST00000545694 CFAP161Q6P656 301 aa4.21□□□□□ -1.74
SYNE1-239ENST00000545694 C5orf38Q86SI9 138 aa4.21□□□□□ -1.74
SYNE1-239ENST00000545694 ARL17AQ8IVW1 177 aa4.21□□□□□ -1.74
SYNE1-239ENST00000545694 LINC00308Q8TCZ7 52 aa4.21□□□□□ -1.74
SYNE1-239ENST00000545694 B9D2Q9BPU9 175 aa4.21□□□□□ -1.74
SYNE1-239ENST00000545694 TRAV13-2A0A0B4J235 113 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 TRBV30A0A0K0K1B3 111 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 F8W1H4 67 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 K7ERJ3 54 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 TSPAN13O95857 204 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 IGHV3-33P01772 117 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 DNAH10OSP0CZ25 163 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 CCL18P55774 89 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 CKS1BP61024 79 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 FOXI1Q12951 378 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 KRTAP21-3Q3LHN1 58 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 ADAMTSL4-AS1Q5T5F5 129 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 TOMM7Q9P0U1 55 aa4.2□□□□□ -1.74
SYNE1-239ENST00000545694 DYNC2H1Q8NCM8 4307 aaKnown RBP4.19□□□□□ -1.74
SYNE1-239ENST00000545694 GVQW2A0A096LPI5 108 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-239ENST00000545694 ESRGQ1W209 222 aa4.19□□□□□ -1.74
SYNE1-239ENST00000545694 RMI2Q96E14 147 aa4.19□□□□□ -1.74
SYNE1-239ENST00000545694 UPK3BQ9BT76 320 aa4.19□□□□□ -1.74
SYNE1-239ENST00000545694 KLK12Q9UKR0 248 aa4.19□□□□□ -1.74
SYNE1-239ENST00000545694 GAGE12HA6NDE8 117 aa4.18□□□□□ -1.74
SYNE1-239ENST00000545694 M0QXV9 152 aa4.18□□□□□ -1.74
SYNE1-239ENST00000545694 SCGB1C2P0DMR2 95 aa4.18□□□□□ -1.74
SYNE1-239ENST00000545694 LINC00158P58513 81 aa4.18□□□□□ -1.74
SYNE1-239ENST00000545694 KIAA0087Q14695 138 aa4.18□□□□□ -1.74
SYNE1-239ENST00000545694 ENHOQ6UWT2 76 aa4.18□□□□□ -1.74
SYNE1-239ENST00000545694 MRAPQ8TCY5 172 aa4.18□□□□□ -1.74
SYNE1-239ENST00000545694 NTN5Q8WTR8 489 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-239ENST00000545694 UBE2WQ96B02 151 aa4.18□□□□□ -1.74
SYNE1-239ENST00000545694 C2orf48Q96LS8 159 aa4.18□□□□□ -1.74
SYNE1-239ENST00000545694 NDUFC2O95298 119 aa4.17□□□□□ -1.74
SYNE1-239ENST00000545694 PSMB2P49721 201 aa4.17□□□□□ -1.74
SYNE1-239ENST00000545694 ATXN8Q156A1 80 aa4.17□□□□□ -1.74
SYNE1-239ENST00000545694 Q1RN00 199 aa4.17□□□□□ -1.74
SYNE1-239ENST00000545694 CLPSL2Q6UWE3 100 aa4.17□□□□□ -1.74
SYNE1-239ENST00000545694 WFDC10BQ8IUB3 73 aa4.17□□□□□ -1.74
SYNE1-239ENST00000545694 MIR7-3HGQ8N6C7 128 aa4.17□□□□□ -1.74
SYNE1-239ENST00000545694 C1orf43Q9BWL3 253 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms