RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 HIST1H2BHQ93079 126 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 URB1-AS1Q96HZ7 61 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 HIST1H2BNQ99877 126 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 HIST1H2BMQ99879 126 aa9.15□□□□□ -0.94
CLSTN3-216ENST00000545663 IGKV3OR2-268A0A0C4DH90 116 aa9.14□□□□□ -0.95
CLSTN3-216ENST00000545663 IFITM10A6NMD0 228 aa9.14□□□□□ -0.95
CLSTN3-216ENST00000545663 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.14□□□□□ -0.95
CLSTN3-216ENST00000545663 GVQW2A0A096LPI5 108 aaPredicted RBP9.13□□□□□ -0.95
CLSTN3-216ENST00000545663 SERF1AO75920 110 aa9.13□□□□□ -0.95
CLSTN3-216ENST00000545663 UBE2D1P51668 147 aa9.13□□□□□ -0.95
CLSTN3-216ENST00000545663 CD164L2Q6UWJ8 174 aa9.13□□□□□ -0.95
CLSTN3-216ENST00000545663 CHCHD10Q8WYQ3 142 aaPredicted RBP9.13□□□□□ -0.95
CLSTN3-216ENST00000545663 AMELXQ99217 191 aa9.13□□□□□ -0.95
CLSTN3-216ENST00000545663 TRAV13-1A0A0B4J241 112 aa9.12□□□□□ -0.95
CLSTN3-216ENST00000545663 PDZD11Q5EBL8 140 aa9.12□□□□□ -0.95
CLSTN3-216ENST00000545663 COA6Q5JTJ3 125 aaKnown RBP9.12□□□□□ -0.95
CLSTN3-216ENST00000545663 PHF5AQ7RTV0 110 aaKnown RBP9.12□□□□□ -0.95
CLSTN3-216ENST00000545663 PACRGQ96M98 296 aaPredicted RBP9.12□□□□□ -0.95
CLSTN3-216ENST00000545663 CDIP1Q9H305 208 aa9.12□□□□□ -0.95
CLSTN3-216ENST00000545663 HSPB8Q9UJY1 196 aa9.12□□□□□ -0.95
CLSTN3-216ENST00000545663 PTTG1IPP53801 180 aa9.11□□□□□ -0.95
CLSTN3-216ENST00000545663 PMVKQ15126 192 aa9.11□□□□□ -0.95
CLSTN3-216ENST00000545663 A0A096LNJ9 63 aa9.1□□□□□ -0.95
CLSTN3-216ENST00000545663 LEPROTL1O95214 131 aa9.1□□□□□ -0.95
CLSTN3-216ENST00000545663 XCL1P47992 114 aa9.1□□□□□ -0.95
CLSTN3-216ENST00000545663 GAGE2BQ13066 116 aa9.1□□□□□ -0.95
CLSTN3-216ENST00000545663 KRTAP11-1Q8IUC1 163 aa9.1□□□□□ -0.95
CLSTN3-216ENST00000545663 OPRPNQ99935 248 aaPredicted RBP9.1□□□□□ -0.95
CLSTN3-216ENST00000545663 APOMO95445 188 aa9.09□□□□□ -0.95
CLSTN3-216ENST00000545663 HERVK_113P63121 156 aa9.09□□□□□ -0.95
CLSTN3-216ENST00000545663 RNASE13Q5GAN3 156 aaKnown RBP9.09□□□□□ -0.95
CLSTN3-216ENST00000545663 FAM19A3Q7Z5A8 133 aa9.09□□□□□ -0.95
CLSTN3-216ENST00000545663 FAM104AQ969W3 186 aa9.09□□□□□ -0.95
CLSTN3-216ENST00000545663 RETNLBQ9BQ08 111 aa9.09□□□□□ -0.95
CLSTN3-216ENST00000545663 COX7A2LO14548 114 aa9.08□□□□□ -0.96
CLSTN3-216ENST00000545663 S100A6P06703 90 aa9.08□□□□□ -0.96
CLSTN3-216ENST00000545663 RPL13AP40429 203 aaKnown RBP9.08□□□□□ -0.96
CLSTN3-216ENST00000545663 PMCHL1Q16048 86 aa9.08□□□□□ -0.96
CLSTN3-216ENST00000545663 LINC01561Q8N1V8 128 aa9.08□□□□□ -0.96
CLSTN3-216ENST00000545663 IFI27L1Q96BM0 104 aa9.08□□□□□ -0.96
CLSTN3-216ENST00000545663 CARD19Q96LW7 228 aa9.08□□□□□ -0.96
CLSTN3-216ENST00000545663 CST9LQ9H4G1 147 aa9.08□□□□□ -0.96
CLSTN3-216ENST00000545663 GEMIN7Q9H840 131 aaKnown RBP9.08□□□□□ -0.96
CLSTN3-216ENST00000545663 MALP21145 153 aa9.07□□□□□ -0.96
CLSTN3-216ENST00000545663 NDUFA6P56556 154 aa9.07□□□□□ -0.96
CLSTN3-216ENST00000545663 FOXI1Q12951 378 aa9.07□□□□□ -0.96
CLSTN3-216ENST00000545663 C9orf116Q5BN46 136 aaPredicted RBP9.07□□□□□ -0.96
CLSTN3-216ENST00000545663 LINC00173Q6ZV60 143 aa9.07□□□□□ -0.96
CLSTN3-216ENST00000545663 FAM19A2Q8N3H0 131 aa9.07□□□□□ -0.96
CLSTN3-216ENST00000545663 TRAV12-1A0A0B4J245 112 aa9.06□□□□□ -0.96
CLSTN3-216ENST00000545663 IGHV1-58A0A0C4DH39 117 aa9.06□□□□□ -0.96
CLSTN3-216ENST00000545663 LINC00310P59036 64 aa9.06□□□□□ -0.96
CLSTN3-216ENST00000545663 LINC00242Q5T6M2 205 aa9.06□□□□□ -0.96
CLSTN3-216ENST00000545663 KRTAP4-1Q9BYQ7 146 aa9.06□□□□□ -0.96
CLSTN3-216ENST00000545663 IGHV3OR16-9A0A0B4J2B5 98 aa9.05□□□□□ -0.96
CLSTN3-216ENST00000545663 TINCRA0A1B0GVN0 87 aa9.05□□□□□ -0.96
CLSTN3-216ENST00000545663 A0A087WZ39 114 aa9.04□□□□□ -0.96
CLSTN3-216ENST00000545663 MAP1LC3CQ9BXW4 147 aa9.04□□□□□ -0.96
CLSTN3-216ENST00000545663 PKIGQ9Y2B9 76 aa9.04□□□□□ -0.96
CLSTN3-216ENST00000545663 F8WDY8 70 aa9.03□□□□□ -0.96
CLSTN3-216ENST00000545663 H3BRM9 83 aa9.03□□□□□ -0.96
CLSTN3-216ENST00000545663 NUPR1O60356 82 aa9.03□□□□□ -0.96
CLSTN3-216ENST00000545663 OR10D4PQ8NGN7 298 aa9.03□□□□□ -0.96
CLSTN3-216ENST00000545663 ZNF561-AS1K7EIQ3 104 aa9.02□□□□□ -0.97
CLSTN3-216ENST00000545663 FABP4P15090 132 aa9.02□□□□□ -0.97
CLSTN3-216ENST00000545663 AKR1D1P51857 326 aa9.02□□□□□ -0.97
CLSTN3-216ENST00000545663 SYCNQ0VAF6 134 aa9.02□□□□□ -0.97
CLSTN3-216ENST00000545663 IGLV5-45A0A087WSX0 123 aa9.01□□□□□ -0.97
CLSTN3-216ENST00000545663 LOC107984640A0A0U1RRK4 108 aa9.01□□□□□ -0.97
CLSTN3-216ENST00000545663 IGLC3P0DOY3 106 aa9.01□□□□□ -0.97
CLSTN3-216ENST00000545663 S100A2P29034 98 aa9.01□□□□□ -0.97
CLSTN3-216ENST00000545663 TPRXLQ17RH7 258 aa9.01□□□□□ -0.97
CLSTN3-216ENST00000545663 C5orf38Q86SI9 138 aa9.01□□□□□ -0.97
CLSTN3-216ENST00000545663 LINC00469Q8N7U9 141 aa9.01□□□□□ -0.97
CLSTN3-216ENST00000545663 CHTOPQ9Y3Y2 248 aaKnown RBP9.01□□□□□ -0.97
CLSTN3-216ENST00000545663 F8VRH5 84 aa9□□□□□ -0.97
CLSTN3-216ENST00000545663 CRYGAP11844 174 aa9□□□□□ -0.97
CLSTN3-216ENST00000545663 ZC2HC1BQ5TFG8 222 aa9□□□□□ -0.97
CLSTN3-216ENST00000545663 PLNP26678 52 aa8.99□□□□□ -0.97
CLSTN3-216ENST00000545663 C2orf48Q96LS8 159 aa8.99□□□□□ -0.97
CLSTN3-216ENST00000545663 CDKN2A-AS1Q9UH64 79 aa8.98□□□□□ -0.97
CLSTN3-216ENST00000545663 IGLV7-46A0A075B6I9 117 aa8.97□□□□□ -0.97
CLSTN3-216ENST00000545663 PRSS2P07478 247 aa8.97□□□□□ -0.97
CLSTN3-216ENST00000545663 LCE2CQ5TA81 110 aa8.97□□□□□ -0.97
CLSTN3-216ENST00000545663 PET117Q6UWS5 81 aa8.97□□□□□ -0.97
CLSTN3-216ENST00000545663 ORAOV1Q8WV07 137 aa8.97□□□□□ -0.97
CLSTN3-216ENST00000545663 IGLV4-69A0A075B6H9 119 aa8.96□□□□□ -0.98
CLSTN3-216ENST00000545663 C20orf202A1L168 122 aa8.96□□□□□ -0.98
CLSTN3-216ENST00000545663 SYS1-DBNDD2H3BUS1 97 aa8.96□□□□□ -0.98
CLSTN3-216ENST00000545663 SPAG11BQ08648 103 aa8.96□□□□□ -0.98
CLSTN3-216ENST00000545663 SFTA2Q6UW10 78 aa8.96□□□□□ -0.98
CLSTN3-216ENST00000545663 MRPL35Q9NZE8 188 aaKnown RBP8.96□□□□□ -0.98
CLSTN3-216ENST00000545663 A0A087X002 238 aa8.95□□□□□ -0.98
CLSTN3-216ENST00000545663 FAM168BA1KXE4 195 aa8.95□□□□□ -0.98
CLSTN3-216ENST00000545663 H0Y8G0 127 aa8.95□□□□□ -0.98
CLSTN3-216ENST00000545663 DPM2O94777 84 aa8.95□□□□□ -0.98
CLSTN3-216ENST00000545663 CXCL5P42830 114 aa8.95□□□□□ -0.98
CLSTN3-216ENST00000545663 TMEM170BQ5T4T1 132 aa8.95□□□□□ -0.98
CLSTN3-216ENST00000545663 Q8IZM0 81 aa8.95□□□□□ -0.98
CLSTN3-216ENST00000545663 HIST3H2BBQ8N257 126 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms