RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 LINC01561Q8N1V8 128 aa14.12□□□□□ -0.15
HDAC4-215ENST00000543185 SMIM1B2RUZ4 78 aa14.12□□□□□ -0.15
HDAC4-215ENST00000543185 TP53AIP1Q9HCN2 124 aa14.12□□□□□ -0.15
HDAC4-215ENST00000543185 PLAC8L1A1L4L8 177 aa14.12□□□□□ -0.15
HDAC4-215ENST00000543185 COX8CQ7Z4L0 72 aa14.11□□□□□ -0.15
HDAC4-215ENST00000543185 LOC100131303A0A0U1RQF7 123 aa14.11□□□□□ -0.15
HDAC4-215ENST00000543185 CYSRT1A8MQ03 144 aa14.11□□□□□ -0.15
HDAC4-215ENST00000543185 CRIP3Q6Q6R5 217 aa14.1□□□□□ -0.15
HDAC4-215ENST00000543185 A0A087WYN8 130 aa14.1□□□□□ -0.15
HDAC4-215ENST00000543185 IGHV4-30-4P0DP06 118 aa14.1□□□□□ -0.15
HDAC4-215ENST00000543185 IGHV4-31P0DP07 118 aa14.1□□□□□ -0.15
HDAC4-215ENST00000543185 AMELXQ99217 191 aa14.1□□□□□ -0.15
HDAC4-215ENST00000543185 IGLV9-49A0A0B4J1Y8 123 aa14.09□□□□□ -0.15
HDAC4-215ENST00000543185 LINC00242Q5T6M2 205 aa14.09□□□□□ -0.15
HDAC4-215ENST00000543185 LINC00575Q6W349 94 aa14.08□□□□□ -0.16
HDAC4-215ENST00000543185 Q8N6K4 173 aa14.07□□□□□ -0.16
HDAC4-215ENST00000543185 RPL37AP8A6NKH3 93 aa14.07□□□□□ -0.16
HDAC4-215ENST00000543185 BBC3Q96PG8 261 aaPredicted RBP14.07□□□□□ -0.16
HDAC4-215ENST00000543185 LINC00310P59036 64 aa14.06□□□□□ -0.16
HDAC4-215ENST00000543185 MSMPQ1L6U9 139 aa14.06□□□□□ -0.16
HDAC4-215ENST00000543185 A0A1B0GUV1 79 aa14.06□□□□□ -0.16
HDAC4-215ENST00000543185 PRR9Q5T870 116 aa14.05□□□□□ -0.16
HDAC4-215ENST00000543185 PROK1P58294 105 aa14.04□□□□□ -0.16
HDAC4-215ENST00000543185 A0A087WVE0 104 aa14.04□□□□□ -0.16
HDAC4-215ENST00000543185 IGLV1-40P01703 118 aa14.03□□□□□ -0.16
HDAC4-215ENST00000543185 PPDPFQ9H3Y8 114 aa14.03□□□□□ -0.16
HDAC4-215ENST00000543185 ZNF843Q8N446 348 aa14.03□□□□□ -0.16
HDAC4-215ENST00000543185 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.02□□□□□ -0.17
HDAC4-215ENST00000543185 FASNP49327 2511 aaKnown RBP14.01□□□□□ -0.17
HDAC4-215ENST00000543185 C1orf229Q6ZS94 237 aaPredicted RBP14.01□□□□□ -0.17
HDAC4-215ENST00000543185 SPAG11AQ6PDA7 123 aa14.01□□□□□ -0.17
HDAC4-215ENST00000543185 LINC01546A6NGU7 62 aa14.01□□□□□ -0.17
HDAC4-215ENST00000543185 IGHV6-1A0A0B4J1U7 121 aa14.01□□□□□ -0.17
HDAC4-215ENST00000543185 C11orf21Q9P2W6 132 aa14□□□□□ -0.17
HDAC4-215ENST00000543185 C2orf48Q96LS8 159 aa13.99□□□□□ -0.17
HDAC4-215ENST00000543185 SHISA2Q6UWI4 295 aa13.99□□□□□ -0.17
HDAC4-215ENST00000543185 H3BPC8 53 aa13.99□□□□□ -0.17
HDAC4-215ENST00000543185 CRIP2P52943 208 aaPredicted RBP13.99□□□□□ -0.17
HDAC4-215ENST00000543185 ADAMTSL4-AS1Q5T5F5 129 aa13.98□□□□□ -0.17
HDAC4-215ENST00000543185 CDIP1Q9H305 208 aa13.98□□□□□ -0.17
HDAC4-215ENST00000543185 Q9BRP9 147 aa13.96□□□□□ -0.17
HDAC4-215ENST00000543185 C8orf87E5RJ46 101 aa13.95□□□□□ -0.18
HDAC4-215ENST00000543185 C1orf64Q8NEQ6 169 aa13.95□□□□□ -0.18
HDAC4-215ENST00000543185 BPTFQ12830 3046 aa13.95□□□□□ -0.18
HDAC4-215ENST00000543185 BRI3O95415 125 aa13.95□□□□□ -0.18
HDAC4-215ENST00000543185 NANOS2P60321 138 aaKnown RBP13.94□□□□□ -0.18
HDAC4-215ENST00000543185 TSPEAR-AS2P59090 65 aa13.94□□□□□ -0.18
HDAC4-215ENST00000543185 BEAN1Q3B7T3 259 aa13.94□□□□□ -0.18
HDAC4-215ENST00000543185 Q8NA96 180 aa13.94□□□□□ -0.18
HDAC4-215ENST00000543185 ZNF580Q9UK33 172 aa13.94□□□□□ -0.18
HDAC4-215ENST00000543185 LINC00846Q9NV44 126 aa13.94□□□□□ -0.18
HDAC4-215ENST00000543185 ACYP2P14621 99 aa13.93□□□□□ -0.18
HDAC4-215ENST00000543185 A0A1B0GU69 56 aa13.92□□□□□ -0.18
HDAC4-215ENST00000543185 GAS8-AS1O95177 125 aa13.92□□□□□ -0.18
HDAC4-215ENST00000543185 C11orf71Q6IPW1 123 aa13.92□□□□□ -0.18
HDAC4-215ENST00000543185 UNQ6190/PRO20217Q6UXQ8 127 aa13.92□□□□□ -0.18
HDAC4-215ENST00000543185 URB1-AS1Q96HZ7 61 aa13.91□□□□□ -0.18
HDAC4-215ENST00000543185 Q8N2B8 174 aa13.91□□□□□ -0.18
HDAC4-215ENST00000543185 ZNF702PQ9H963 129 aa13.91□□□□□ -0.18
HDAC4-215ENST00000543185 NUPR2A6NF83 97 aa13.9□□□□□ -0.18
HDAC4-215ENST00000543185 CIRBP-AS1Q8TBR5 109 aa13.9□□□□□ -0.18
HDAC4-215ENST00000543185 Q6ZSV7 163 aa13.9□□□□□ -0.18
HDAC4-215ENST00000543185 IGLV2-18A0A075B6J9 118 aa13.9□□□□□ -0.19
HDAC4-215ENST00000543185 COX6A2Q02221 97 aa13.89□□□□□ -0.19
HDAC4-215ENST00000543185 Q6ZTC4 211 aa13.88□□□□□ -0.19
HDAC4-215ENST00000543185 A0A087WSZ3 146 aa13.85□□□□□ -0.19
HDAC4-215ENST00000543185 C9orf116Q5BN46 136 aaPredicted RBP13.84□□□□□ -0.19
HDAC4-215ENST00000543185 PCOTHQ58A44 107 aa13.84□□□□□ -0.19
HDAC4-215ENST00000543185 LOC110117498A0A087WWA1 95 aa13.84□□□□□ -0.19
HDAC4-215ENST00000543185 LINC00337Q8N6G1 96 aa13.83□□□□□ -0.19
HDAC4-215ENST00000543185 LINC00482Q8N8I6 264 aa13.83□□□□□ -0.19
HDAC4-215ENST00000543185 X6R8D5 127 aa13.82□□□□□ -0.2
HDAC4-215ENST00000543185 ERC2-IT1O76042 136 aa13.81□□□□□ -0.2
HDAC4-215ENST00000543185 A0A096LNJ9 63 aa13.81□□□□□ -0.2
HDAC4-215ENST00000543185 SBSPONQ8IVN8 264 aa13.81□□□□□ -0.2
HDAC4-215ENST00000543185 C7orf65Q6ZTY9 151 aa13.8□□□□□ -0.2
HDAC4-215ENST00000543185 IGLV5-39A0A0G2JS06 123 aa13.8□□□□□ -0.2
HDAC4-215ENST00000543185 A0A1W2PNU3 283 aaPredicted RBP13.8□□□□□ -0.2
HDAC4-215ENST00000543185 PLA2G5P39877 138 aa13.8□□□□□ -0.2
HDAC4-215ENST00000543185 PRR3P79522 188 aaKnown RBP13.8□□□□□ -0.2
HDAC4-215ENST00000543185 C6orf48Q9UBA6 75 aa13.8□□□□□ -0.2
HDAC4-215ENST00000543185 CR1P17927 2039 aa13.78□□□□□ -0.2
HDAC4-215ENST00000543185 C6orf223Q8N319 242 aa13.77□□□□□ -0.21
HDAC4-215ENST00000543185 PRM2P04554 102 aa13.76□□□□□ -0.21
HDAC4-215ENST00000543185 C4orf26Q17RF5 130 aa13.76□□□□□ -0.21
HDAC4-215ENST00000543185 CYP4F30PQ9H0H9 118 aa13.75□□□□□ -0.21
HDAC4-215ENST00000543185 FHL2Q14192 279 aa13.75□□□□□ -0.21
HDAC4-215ENST00000543185 SMIM29Q86T20 159 aa13.75□□□□□ -0.21
HDAC4-215ENST00000543185 SPINK1P00995 79 aa13.74□□□□□ -0.21
HDAC4-215ENST00000543185 C11orf72Q8NBR9 251 aa13.73□□□□□ -0.21
HDAC4-215ENST00000543185 RETNLBQ9BQ08 111 aa13.73□□□□□ -0.21
HDAC4-215ENST00000543185 LINC01006Q8NI28 216 aa13.73□□□□□ -0.21
HDAC4-215ENST00000543185 TRAV22A0A0B4J277 110 aa13.73□□□□□ -0.21
HDAC4-215ENST00000543185 IGLV1-51P01701 117 aa13.72□□□□□ -0.21
HDAC4-215ENST00000543185 IGLV5-52A0A0A0MRZ9 124 aa13.71□□□□□ -0.21
HDAC4-215ENST00000543185 IGLV4-60A0A075B6I1 120 aa13.71□□□□□ -0.21
HDAC4-215ENST00000543185 ODF3L2Q3SX64 289 aa13.7□□□□□ -0.22
HDAC4-215ENST00000543185 C10orf99Q6UWK7 81 aa13.7□□□□□ -0.22
HDAC4-215ENST00000543185 ATP11AUNQ6ZP68 121 aa13.7□□□□□ -0.22
HDAC4-215ENST00000543185 IGLV5-45A0A087WSX0 123 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms