RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 PYGO1Q9Y3Y4 419 aa2.84□□□□□ -1.95
NPIPB3-211ENST00000542953 A0A087WZ39 114 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 LOC107984640A0A0U1RRK4 108 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 LOC389332A0A1B0GUA5 103 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 TMEM218A2RU14 115 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 IGIPA6NJ69 53 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 IFITM10A6NMD0 228 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 APOMO95445 188 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 MT-ND4LP03901 98 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 CRYGAP11844 174 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 MALP21145 153 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 UBE2D1P51668 147 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 SPAG11BQ08648 103 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 SMAGPQ0VAQ4 97 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 GAGE2BQ13066 116 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 UNQ6190/PRO20217Q6UXQ8 127 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 Q8N8P6 123 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 OR10D4PQ8NGN7 298 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 TMEM18Q96B42 140 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 CAMK2N2Q96S95 79 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 AMELXQ99217 191 aa2.83□□□□□ -1.96
NPIPB3-211ENST00000542953 FAM168BA1KXE4 195 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 MT-ND6P03923 174 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 IGLV7-43P04211 117 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 RAB5AP20339 215 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 RAB14P61106 215 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 KIAA1644Q3SXP7 199 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 C9orf116Q5BN46 136 aaPredicted RBP2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 C1orf137Q5JT78 98 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 C2orf66Q6UXQ4 117 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 PHF5AQ7RTV0 110 aaKnown RBP2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 ORAOV1Q8WV07 137 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 IMMP2LQ96T52 175 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 KRTAP4-1Q9BYQ7 146 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 KRTAP2-2Q9BYT5 123 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 MAP1LC3AQ9H492 121 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 MRPL35Q9NZE8 188 aaKnown RBP2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 C6orf48Q9UBA6 75 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 LAMTOR2Q9Y2Q5 125 aa2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 CARHSP1Q9Y2V2 147 aaKnown RBP2.82□□□□□ -1.96
NPIPB3-211ENST00000542953 LINC01546A6NGU7 62 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 F8WDY8 70 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 TSPAN13O95857 204 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 TLX1NBP0CAT3 122 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 IFI27P40305 119 aaPredicted RBP2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 MT1HP80294 61 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 ASB16-AS1Q495Z4 193 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 C10orf91Q5T1B1 145 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 UQCC3Q6UW78 93 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 C2orf82Q6UX34 121 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 FAM19A3Q7Z5A8 133 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 LINC01561Q8N1V8 128 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 TMEM141Q96I45 108 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 CYSLTR1Q9Y271 337 aa2.81□□□□□ -1.96
NPIPB3-211ENST00000542953 TGIF2-C20orf24A0A0A6YYL0 155 aa2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 K7EMI3 77 aa2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 NDUFA1O15239 70 aa2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 NPSP0C0P6 89 aa2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 RPL18AQ02543 176 aaKnown RBP2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 KRTAP19-2Q3LHN2 52 aa2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 ORMDL2Q53FV1 153 aa2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 C9orf129Q5T035 196 aaKnown RBP2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 TOMM6Q96B49 74 aa2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 ALKBH7Q9BT30 221 aaPredicted RBP2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 SEC11CQ9BY50 192 aa2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 CTDSP1Q9GZU7 261 aa2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 NXT2Q9NPJ8 142 aaKnown RBP2.8□□□□□ -1.96
NPIPB3-211ENST00000542953 TRAV9-1A0A075B6T8 112 aa2.79□□□□□ -1.96
NPIPB3-211ENST00000542953 GAGE2EQ4V326 116 aa2.79□□□□□ -1.96
NPIPB3-211ENST00000542953 TEX43Q6ZNM6 134 aa2.79□□□□□ -1.96
NPIPB3-211ENST00000542953 URB1-AS1Q96HZ7 61 aa2.79□□□□□ -1.96
NPIPB3-211ENST00000542953 TIMM17AQ99595 171 aa2.79□□□□□ -1.96
NPIPB3-211ENST00000542953 GNB1LQ9BYB4 327 aa2.79□□□□□ -1.96
NPIPB3-211ENST00000542953 VCX2Q9H322 139 aa2.79□□□□□ -1.96
NPIPB3-211ENST00000542953 GAGE2DQ9UEU5 116 aa2.79□□□□□ -1.96
NPIPB3-211ENST00000542953 CDKN2A-AS1Q9UH64 79 aa2.79□□□□□ -1.96
NPIPB3-211ENST00000542953 IGLV7-46A0A075B6I9 117 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 IGLV5-45A0A087WSX0 123 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 A0A096LNJ9 63 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 TRBV30A0A0K0K1B3 111 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 NDUFC2-KCTD14E9PQ53 114 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 Q6ZN92 141 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 ERASQ7Z444 233 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 FAM19A5Q7Z5A7 132 aaPredicted RBP2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 COMMD7Q86VX2 200 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 Q8IZM0 81 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 RETNLBQ9BQ08 111 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 C2orf88Q9BSF0 95 aa2.78□□□□□ -1.96
NPIPB3-211ENST00000542953 TINCRA0A1B0GVN0 87 aa2.77□□□□□ -1.97
NPIPB3-211ENST00000542953 SMIM1B2RUZ4 78 aa2.77□□□□□ -1.97
NPIPB3-211ENST00000542953 HERVK_113P63121 156 aa2.77□□□□□ -1.97
NPIPB3-211ENST00000542953 CTAG1AP78358 180 aa2.77□□□□□ -1.97
NPIPB3-211ENST00000542953 C6orf226Q5I0X4 101 aa2.77□□□□□ -1.97
NPIPB3-211ENST00000542953 LINC00469Q8N7U9 141 aa2.77□□□□□ -1.97
NPIPB3-211ENST00000542953 YPEL4Q96NS1 127 aa2.77□□□□□ -1.97
NPIPB3-211ENST00000542953 SCGB3A1Q96QR1 104 aa2.77□□□□□ -1.97
NPIPB3-211ENST00000542953 CST9LQ9H4G1 147 aa2.77□□□□□ -1.97
NPIPB3-211ENST00000542953 TOMM7Q9P0U1 55 aa2.77□□□□□ -1.97
NPIPB3-211ENST00000542953 A0A087X002 238 aa2.76□□□□□ -1.97
NPIPB3-211ENST00000542953 M0QXV9 152 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms