RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 A0A1B0GV50 99 aa2.63□□□□□ -1.99
LIMS1-214ENST00000542845 NDUFC2-KCTD14E9PQ53 114 aa2.63□□□□□ -1.99
LIMS1-214ENST00000542845 F2Z2F3 143 aa2.63□□□□□ -1.99
LIMS1-214ENST00000542845 IFNA1P01562 189 aa2.63□□□□□ -1.99
LIMS1-214ENST00000542845 FOXA3P55318 350 aaPredicted RBP2.63□□□□□ -1.99
LIMS1-214ENST00000542845 H2BFSP57053 126 aa2.63□□□□□ -1.99
LIMS1-214ENST00000542845 RPS20P60866 119 aaKnown RBP2.63□□□□□ -1.99
LIMS1-214ENST00000542845 SPAG11AQ6PDA7 123 aa2.63□□□□□ -1.99
LIMS1-214ENST00000542845 MRPL55Q7Z7F7 128 aaKnown RBP2.63□□□□□ -1.99
LIMS1-214ENST00000542845 PSMG3Q9BT73 122 aaPredicted RBP2.63□□□□□ -1.99
LIMS1-214ENST00000542845 RNASE7Q9H1E1 156 aaKnown RBP2.63□□□□□ -1.99
LIMS1-214ENST00000542845 CYTL1Q9NRR1 136 aa2.63□□□□□ -1.99
LIMS1-214ENST00000542845 C7orf77A4D0Y5 90 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 ZNF727A8MUV8 499 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 S100A9P06702 114 aaKnown RBP2.62□□□□□ -1.99
LIMS1-214ENST00000542845 FCER1GP30273 86 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 RPL32P62910 135 aaKnown RBP2.62□□□□□ -1.99
LIMS1-214ENST00000542845 CTAG1AP78358 180 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 KRTAP5-4Q6L8H1 288 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 Q6ZN92 141 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 SMIM15Q7Z3B0 74 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 MRPL52Q86TS9 123 aaKnown RBP2.62□□□□□ -1.99
LIMS1-214ENST00000542845 LINC00167Q96N53 147 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 KIR2DL4Q99706 377 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 CCDC32Q9BV29 185 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 ST20Q9HBF5 79 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 DHRS4-AS1Q9P1J3 65 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 NDUFA12Q9UI09 145 aa2.62□□□□□ -1.99
LIMS1-214ENST00000542845 TRBV30A0A0K0K1B3 111 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 MAP1LC3B2A6NCE7 125 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 SSNA1O43805 119 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 PFDN1O60925 122 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 UPK1BO75841 260 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 PRLHP81277 87 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 AKR1C8PQ5T2L2 129 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 Q6Q795 121 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 Q6ZUT4 128 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 MAP1LC3BQ9GZQ8 125 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 TOMM7Q9P0U1 55 aa2.61□□□□□ -1.99
LIMS1-214ENST00000542845 IGKV2-28A0A075B6P5 120 aa2.6□□□□□ -1.99
LIMS1-214ENST00000542845 TGIF2-C20orf24A0A0A6YYL0 155 aa2.6□□□□□ -1.99
LIMS1-214ENST00000542845 IGKV2D-28P01615 120 aa2.6□□□□□ -1.99
LIMS1-214ENST00000542845 SMAGPQ0VAQ4 97 aa2.6□□□□□ -1.99
LIMS1-214ENST00000542845 RPL7L1Q6DKI1 246 aaKnown RBP2.6□□□□□ -1.99
LIMS1-214ENST00000542845 TEX261Q6UWH6 196 aa2.6□□□□□ -1.99
LIMS1-214ENST00000542845 FAM19A1Q7Z5A9 133 aa2.6□□□□□ -1.99
LIMS1-214ENST00000542845 TCEAL7Q9BRU2 100 aa2.6□□□□□ -1.99
LIMS1-214ENST00000542845 GEMIN7Q9H840 131 aaKnown RBP2.6□□□□□ -1.99
LIMS1-214ENST00000542845 CSDC2Q9Y534 153 aaKnown RBP2.6□□□□□ -1.99
LIMS1-214ENST00000542845 BORCS7-ASMTA0A0B4J1R7 106 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 IGHV3OR16-9A0A0B4J2B5 98 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 RAB19A4D1S5 217 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 C9orf92A6NGG3 77 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 TEX46H3BTG2 121 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 RPL35P42766 123 aaKnown RBP2.59□□□□□ -1.99
LIMS1-214ENST00000542845 CKS1BP61024 79 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 KIAA0087Q14695 138 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 ZC2HC1BQ5TFG8 222 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 KRTAP5-11Q6L8G4 156 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 C2orf66Q6UXQ4 117 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 Q8N377 158 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 C9orf62Q8N4C0 152 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 PLEKHB2Q96CS7 222 aa2.59□□□□□ -1.99
LIMS1-214ENST00000542845 FLGP20930 4061 aaPredicted RBP2.59□□□□□ -2
LIMS1-214ENST00000542845 TRBV6-5A0A0K0K1A5 114 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 SMKR1H3BMG3 65 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 SCO1O75880 301 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 SPINK1P00995 79 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 POLR2KP53803 58 aaKnown RBP2.58□□□□□ -2
LIMS1-214ENST00000542845 RPL39P62891 51 aaKnown RBP2.58□□□□□ -2
LIMS1-214ENST00000542845 CENPWQ5EE01 88 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 KRTAP13-1Q8IUC0 172 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 CBLN2Q8IUK8 224 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 KCNRGQ8N5I3 272 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 NKAPP1Q8N9T2 125 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 ENKURQ8TC29 256 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 SFT2D1Q8WV19 159 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 HIGD2AQ9BW72 106 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 TP73-AS1Q9UF72 201 aa2.58□□□□□ -2
LIMS1-214ENST00000542845 TRBV27A0A0K0K1C4 114 aa2.57□□□□□ -2
LIMS1-214ENST00000542845 A0A1B0GWB2 263 aa2.57□□□□□ -2
LIMS1-214ENST00000542845 GNG4P50150 75 aa2.57□□□□□ -2
LIMS1-214ENST00000542845 RAB5BP61020 215 aa2.57□□□□□ -2
LIMS1-214ENST00000542845 KRTAP5-1Q6L8H4 278 aa2.57□□□□□ -2
LIMS1-214ENST00000542845 KRTAP4-4Q9BYR3 166 aa2.57□□□□□ -2
LIMS1-214ENST00000542845 TRBV20OR9-2A0A075B6H5 130 aa2.56□□□□□ -2
LIMS1-214ENST00000542845 TMEM238C9JI98 176 aa2.56□□□□□ -2
LIMS1-214ENST00000542845 SLC25A20O43772 301 aa2.56□□□□□ -2
LIMS1-214ENST00000542845 HBBP68871 147 aa2.56□□□□□ -2
LIMS1-214ENST00000542845 CXCL6P80162 114 aa2.56□□□□□ -2
LIMS1-214ENST00000542845 KRTAP6-3Q3LI67 103 aa2.56□□□□□ -2
LIMS1-214ENST00000542845 FAM19A2Q8N3H0 131 aa2.56□□□□□ -2
LIMS1-214ENST00000542845 FAM213BQ8TBF2 198 aa2.56□□□□□ -2
LIMS1-214ENST00000542845 GIPP09681 153 aaPredicted RBP2.55□□□□□ -2
LIMS1-214ENST00000542845 RAB4AP20338 218 aa2.55□□□□□ -2
LIMS1-214ENST00000542845 FAM210AQ96ND0 272 aa2.55□□□□□ -2
LIMS1-214ENST00000542845 SPRR4Q96PI1 79 aa2.55□□□□□ -2
LIMS1-214ENST00000542845 TIMM21Q9BVV7 248 aa2.55□□□□□ -2
LIMS1-214ENST00000542845 TMEM126AQ9H061 195 aa2.55□□□□□ -2
LIMS1-214ENST00000542845 LINC00846Q9NV44 126 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms