RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 AMELXQ99217 191 aa10.31□□□□□ -0.76
CLSTN3-214ENST00000542663 RPL37AP8A6NKH3 93 aa10.3□□□□□ -0.76
CLSTN3-214ENST00000542663 F8W036 122 aa10.3□□□□□ -0.76
CLSTN3-214ENST00000542663 LINC00304Q8N9R0 145 aa10.3□□□□□ -0.76
CLSTN3-214ENST00000542663 LINC00167Q96N53 147 aa10.3□□□□□ -0.76
CLSTN3-214ENST00000542663 FAM19A3Q7Z5A8 133 aa10.29□□□□□ -0.76
CLSTN3-214ENST00000542663 ORMDL3Q8N138 153 aa10.29□□□□□ -0.76
CLSTN3-214ENST00000542663 C2orf88Q9BSF0 95 aa10.29□□□□□ -0.76
CLSTN3-214ENST00000542663 ALKBH7Q9BT30 221 aaPredicted RBP10.29□□□□□ -0.76
CLSTN3-214ENST00000542663 IGLV7-46A0A075B6I9 117 aa10.28□□□□□ -0.76
CLSTN3-214ENST00000542663 S100A8P05109 93 aa10.28□□□□□ -0.76
CLSTN3-214ENST00000542663 CLLU1Q5K131 121 aa10.28□□□□□ -0.76
CLSTN3-214ENST00000542663 PRELID3AQ96N28 172 aa10.28□□□□□ -0.76
CLSTN3-214ENST00000542663 PRSS47A8MTI9 375 aa10.27□□□□□ -0.77
CLSTN3-214ENST00000542663 F8VRH5 84 aa10.27□□□□□ -0.77
CLSTN3-214ENST00000542663 FAM229BQ4G0N7 80 aa10.27□□□□□ -0.77
CLSTN3-214ENST00000542663 TMEM136Q6ZRR5 245 aa10.27□□□□□ -0.77
CLSTN3-214ENST00000542663 C2orf66Q6UXQ4 117 aa10.26□□□□□ -0.77
CLSTN3-214ENST00000542663 CDKN2A-AS1Q9UH64 79 aa10.26□□□□□ -0.77
CLSTN3-214ENST00000542663 LOC389332A0A1B0GUA5 103 aa10.25□□□□□ -0.77
CLSTN3-214ENST00000542663 IFITM2Q01629 132 aa10.25□□□□□ -0.77
CLSTN3-214ENST00000542663 VCX2Q9H322 139 aa10.25□□□□□ -0.77
CLSTN3-214ENST00000542663 CYSLTR1Q9Y271 337 aa10.25□□□□□ -0.77
CLSTN3-214ENST00000542663 GAGE10A6NGK3 116 aa10.24□□□□□ -0.77
CLSTN3-214ENST00000542663 PNRC1Q12796 327 aaPredicted RBP10.24□□□□□ -0.77
CLSTN3-214ENST00000542663 IGIPA6NJ69 53 aa10.23□□□□□ -0.77
CLSTN3-214ENST00000542663 UBE2AP49459 152 aa10.22□□□□□ -0.77
CLSTN3-214ENST00000542663 IGLV5-37A0A075B6J1 123 aa10.21□□□□□ -0.77
CLSTN3-214ENST00000542663 NPSP0C0P6 89 aa10.21□□□□□ -0.77
CLSTN3-214ENST00000542663 HERVK_113P63121 156 aa10.21□□□□□ -0.77
CLSTN3-214ENST00000542663 Q8N8P6 123 aa10.21□□□□□ -0.77
CLSTN3-214ENST00000542663 PPDPFQ9H3Y8 114 aa10.21□□□□□ -0.77
CLSTN3-214ENST00000542663 MAP1LC3AQ9H492 121 aa10.21□□□□□ -0.77
CLSTN3-214ENST00000542663 IGKV2D-26A0A0A0MRZ7 120 aa10.2□□□□□ -0.78
CLSTN3-214ENST00000542663 CXCL5P42830 114 aa10.2□□□□□ -0.78
CLSTN3-214ENST00000542663 CTAG1AP78358 180 aa10.2□□□□□ -0.78
CLSTN3-214ENST00000542663 LCE2DQ5TA82 110 aaPredicted RBP10.2□□□□□ -0.78
CLSTN3-214ENST00000542663 ATP5L2Q7Z4Y8 100 aa10.2□□□□□ -0.78
CLSTN3-214ENST00000542663 LAMTOR2Q9Y2Q5 125 aa10.2□□□□□ -0.78
CLSTN3-214ENST00000542663 MT-ND4LP03901 98 aa10.19□□□□□ -0.78
CLSTN3-214ENST00000542663 SMIM1B2RUZ4 78 aa10.18□□□□□ -0.78
CLSTN3-214ENST00000542663 SCO1O75880 301 aa10.18□□□□□ -0.78
CLSTN3-214ENST00000542663 ADCYAP1P18509 176 aa10.18□□□□□ -0.78
CLSTN3-214ENST00000542663 UQCC3Q6UW78 93 aa10.18□□□□□ -0.78
CLSTN3-214ENST00000542663 ANAPC16Q96DE5 110 aa10.18□□□□□ -0.78
CLSTN3-214ENST00000542663 SEC11AP67812 179 aa10.17□□□□□ -0.78
CLSTN3-214ENST00000542663 PRLHP81277 87 aa10.17□□□□□ -0.78
CLSTN3-214ENST00000542663 ORMDL2Q53FV1 153 aa10.17□□□□□ -0.78
CLSTN3-214ENST00000542663 GEMIN7Q9H840 131 aaKnown RBP10.17□□□□□ -0.78
CLSTN3-214ENST00000542663 IGKV2-28A0A075B6P5 120 aa10.16□□□□□ -0.78
CLSTN3-214ENST00000542663 IGKV2D-28P01615 120 aa10.16□□□□□ -0.78
CLSTN3-214ENST00000542663 C3orf22Q8N5N4 141 aa10.16□□□□□ -0.78
CLSTN3-214ENST00000542663 NKAPP1Q8N9T2 125 aa10.16□□□□□ -0.78
CLSTN3-214ENST00000542663 TMEM218A2RU14 115 aa10.15□□□□□ -0.78
CLSTN3-214ENST00000542663 COMMD7Q86VX2 200 aa10.15□□□□□ -0.78
CLSTN3-214ENST00000542663 COX7B2Q8TF08 81 aa10.15□□□□□ -0.78
CLSTN3-214ENST00000542663 RAB5BP61020 215 aa10.14□□□□□ -0.79
CLSTN3-214ENST00000542663 KRTAP4-1Q9BYQ7 146 aa10.14□□□□□ -0.79
CLSTN3-214ENST00000542663 K7EMI3 77 aa10.13□□□□□ -0.79
CLSTN3-214ENST00000542663 PDZD11Q5EBL8 140 aa10.13□□□□□ -0.79
CLSTN3-214ENST00000542663 TIMM17AQ99595 171 aa10.13□□□□□ -0.79
CLSTN3-214ENST00000542663 CRCT1Q9UGL9 99 aa10.13□□□□□ -0.79
CLSTN3-214ENST00000542663 ASB16-AS1Q495Z4 193 aa10.12□□□□□ -0.79
CLSTN3-214ENST00000542663 PAPPA-AS1Q5QFB9 102 aa10.12□□□□□ -0.79
CLSTN3-214ENST00000542663 IGLV5-45A0A087WSX0 123 aa10.11□□□□□ -0.79
CLSTN3-214ENST00000542663 TMEM238C9JI98 176 aa10.11□□□□□ -0.79
CLSTN3-214ENST00000542663 LINC01547P58512 204 aaPredicted RBP10.11□□□□□ -0.79
CLSTN3-214ENST00000542663 KRTAP13-3Q3SY46 172 aa10.11□□□□□ -0.79
CLSTN3-214ENST00000542663 FAM19A1Q7Z5A9 133 aa10.11□□□□□ -0.79
CLSTN3-214ENST00000542663 TOMM6Q96B49 74 aa10.11□□□□□ -0.79
CLSTN3-214ENST00000542663 PLEKHB2Q96CS7 222 aa10.11□□□□□ -0.79
CLSTN3-214ENST00000542663 SEC11CQ9BY50 192 aa10.11□□□□□ -0.79
CLSTN3-214ENST00000542663 TMEM126AQ9H061 195 aa10.11□□□□□ -0.79
CLSTN3-214ENST00000542663 TINCRA0A1B0GVN0 87 aa10.09□□□□□ -0.79
CLSTN3-214ENST00000542663 FP248Q71RG6 208 aaPredicted RBP10.09□□□□□ -0.79
CLSTN3-214ENST00000542663 NXT2Q9NPJ8 142 aaKnown RBP10.09□□□□□ -0.79
CLSTN3-214ENST00000542663 FSIP2Q5CZC0 6907 aa10.08□□□□□ -0.8
CLSTN3-214ENST00000542663 M0R378 163 aa10.08□□□□□ -0.8
CLSTN3-214ENST00000542663 SPINK8P0C7L1 97 aa10.08□□□□□ -0.8
CLSTN3-214ENST00000542663 VPREB1P12018 145 aa10.08□□□□□ -0.8
CLSTN3-214ENST00000542663 SPAG11AQ6PDA7 123 aa10.07□□□□□ -0.8
CLSTN3-214ENST00000542663 ERASQ7Z444 233 aa10.07□□□□□ -0.8
CLSTN3-214ENST00000542663 LINC00337Q8N6G1 96 aa10.06□□□□□ -0.8
CLSTN3-214ENST00000542663 TRAV9-1A0A075B6T8 112 aa10.05□□□□□ -0.8
CLSTN3-214ENST00000542663 G0S2P27469 103 aa10.05□□□□□ -0.8
CLSTN3-214ENST00000542663 Q8NDZ9 215 aa10.05□□□□□ -0.8
CLSTN3-214ENST00000542663 PFN2P35080 140 aa10.04□□□□□ -0.8
CLSTN3-214ENST00000542663 C10orf91Q5T1B1 145 aa10.04□□□□□ -0.8
CLSTN3-214ENST00000542663 CBLN2Q8IUK8 224 aa10.04□□□□□ -0.8
CLSTN3-214ENST00000542663 SCGB3A1Q96QR1 104 aa10.04□□□□□ -0.8
CLSTN3-214ENST00000542663 SND1-IT1Q9HBX3 110 aa10.03□□□□□ -0.8
CLSTN3-214ENST00000542663 ATP5LO75964 103 aa10.02□□□□□ -0.81
CLSTN3-214ENST00000542663 S100PP25815 95 aa10.02□□□□□ -0.81
CLSTN3-214ENST00000542663 SPRR4Q96PI1 79 aa10.02□□□□□ -0.81
CLSTN3-214ENST00000542663 HIGD2AQ9BW72 106 aa10.02□□□□□ -0.81
CLSTN3-214ENST00000542663 CST9LQ9H4G1 147 aa10.02□□□□□ -0.81
CLSTN3-214ENST00000542663 RHEBQ15382 184 aa10.01□□□□□ -0.81
CLSTN3-214ENST00000542663 GNB1LQ9BYB4 327 aa10.01□□□□□ -0.81
CLSTN3-214ENST00000542663 DAND5Q8N907 189 aa10□□□□□ -0.81
CLSTN3-214ENST00000542663 SEC61BP60468 96 aaKnown RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms