RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 OVOL2Q9BRP0 275 aa8.75□□□□□ -1.01
RNF4-222ENST00000541204 SND1-IT1Q9HBX3 110 aa8.75□□□□□ -1.01
RNF4-222ENST00000541204 LINC00158P58513 81 aa8.75□□□□□ -1.01
RNF4-222ENST00000541204 FHL2Q14192 279 aa8.75□□□□□ -1.01
RNF4-222ENST00000541204 A0A096LPF7 62 aa8.74□□□□□ -1.01
RNF4-222ENST00000541204 RPL28P46779 137 aaKnown RBP8.74□□□□□ -1.01
RNF4-222ENST00000541204 DEFB135Q30KP9 77 aa8.74□□□□□ -1.01
RNF4-222ENST00000541204 PPDPFQ9H3Y8 114 aa8.73□□□□□ -1.01
RNF4-222ENST00000541204 TRBV6-8A0A0A6YYG3 113 aa8.73□□□□□ -1.01
RNF4-222ENST00000541204 F8P00451 2351 aa8.73□□□□□ -1.01
RNF4-222ENST00000541204 FAM236AA0A1B0GUQ0 79 aa8.73□□□□□ -1.01
RNF4-222ENST00000541204 FAM236BA0A1B0GV22 79 aa8.73□□□□□ -1.01
RNF4-222ENST00000541204 FAM222AQ5U5X8 452 aa8.73□□□□□ -1.01
RNF4-222ENST00000541204 A0A087WYN8 130 aa8.72□□□□□ -1.01
RNF4-222ENST00000541204 IGHV3OR16-9A0A0B4J2B5 98 aa8.72□□□□□ -1.01
RNF4-222ENST00000541204 MALP21145 153 aa8.72□□□□□ -1.01
RNF4-222ENST00000541204 PFN2P35080 140 aa8.72□□□□□ -1.01
RNF4-222ENST00000541204 C9orf66Q5T8R8 295 aa8.72□□□□□ -1.01
RNF4-222ENST00000541204 C5orf38Q86SI9 138 aa8.72□□□□□ -1.01
RNF4-222ENST00000541204 SMIM11BQ8TCY0 68 aa8.72□□□□□ -1.01
RNF4-222ENST00000541204 CCL18P55774 89 aa8.72□□□□□ -1.01
RNF4-222ENST00000541204 X6R8D5 127 aa8.72□□□□□ -1.01
RNF4-222ENST00000541204 GAGE2AQ6NT46 116 aa8.71□□□□□ -1.01
RNF4-222ENST00000541204 LINC00643Q86TS7 51 aa8.71□□□□□ -1.02
RNF4-222ENST00000541204 GYPEP15421 78 aa8.7□□□□□ -1.02
RNF4-222ENST00000541204 C11orf68Q9H3H3 251 aaKnown RBP8.7□□□□□ -1.02
RNF4-222ENST00000541204 IMUPQ9GZP8 106 aa8.7□□□□□ -1.02
RNF4-222ENST00000541204 A0A087WZ39 114 aa8.69□□□□□ -1.02
RNF4-222ENST00000541204 DNAL4O96015 105 aa8.69□□□□□ -1.02
RNF4-222ENST00000541204 C9orf129Q5T035 196 aaKnown RBP8.69□□□□□ -1.02
RNF4-222ENST00000541204 ATP5G1P05496 136 aa8.69□□□□□ -1.02
RNF4-222ENST00000541204 INAFM2P0DMQ5 153 aa8.69□□□□□ -1.02
RNF4-222ENST00000541204 SDIM1Q6ZPB5 146 aa8.69□□□□□ -1.02
RNF4-222ENST00000541204 C3orf56Q8N813 242 aa8.68□□□□□ -1.02
RNF4-222ENST00000541204 IBA57-AS1B1ANH7 110 aa8.68□□□□□ -1.02
RNF4-222ENST00000541204 PAX4O43316 350 aa8.68□□□□□ -1.02
RNF4-222ENST00000541204 LINC00959A0A1B0GUT2 108 aa8.67□□□□□ -1.02
RNF4-222ENST00000541204 CLPSL2Q6UWE3 100 aa8.67□□□□□ -1.02
RNF4-222ENST00000541204 OR13C6PQ8NH95 151 aa8.67□□□□□ -1.02
RNF4-222ENST00000541204 XCL1P47992 114 aa8.66□□□□□ -1.02
RNF4-222ENST00000541204 C6orf226Q5I0X4 101 aa8.66□□□□□ -1.02
RNF4-222ENST00000541204 KIR2DL5BQ8NHK3 375 aa8.66□□□□□ -1.02
RNF4-222ENST00000541204 C14orf132Q9NPU4 83 aa8.66□□□□□ -1.02
RNF4-222ENST00000541204 LECT2O14960 151 aa8.66□□□□□ -1.02
RNF4-222ENST00000541204 IGHV4-28A0A0C4DH34 117 aa8.65□□□□□ -1.02
RNF4-222ENST00000541204 H0YGX0 51 aa8.65□□□□□ -1.02
RNF4-222ENST00000541204 HTN3P15516 51 aa8.65□□□□□ -1.02
RNF4-222ENST00000541204 STAB1Q9NY15 2570 aa8.64□□□□□ -1.03
RNF4-222ENST00000541204 SLPIP03973 132 aa8.64□□□□□ -1.03
RNF4-222ENST00000541204 CELA1Q9UNI1 258 aa8.64□□□□□ -1.03
RNF4-222ENST00000541204 PRO0255Q9UI72 69 aa8.63□□□□□ -1.03
RNF4-222ENST00000541204 PKD1L1Q8TDX9 2849 aa8.63□□□□□ -1.03
RNF4-222ENST00000541204 APOC4P55056 127 aa8.63□□□□□ -1.03
RNF4-222ENST00000541204 SMIM20Q8N5G0 67 aa8.63□□□□□ -1.03
RNF4-222ENST00000541204 LINC00612Q8N6U2 182 aa8.63□□□□□ -1.03
RNF4-222ENST00000541204 SMIM9A6NGZ8 99 aa8.62□□□□□ -1.03
RNF4-222ENST00000541204 Q8N3U1 123 aa8.62□□□□□ -1.03
RNF4-222ENST00000541204 NCR3O14931 201 aa8.62□□□□□ -1.03
RNF4-222ENST00000541204 IGHV4-30-4P0DP06 118 aa8.62□□□□□ -1.03
RNF4-222ENST00000541204 DAD1P61803 113 aa8.62□□□□□ -1.03
RNF4-222ENST00000541204 OXLD1Q5BKU9 147 aa8.62□□□□□ -1.03
RNF4-222ENST00000541204 FBN1P35555 2871 aaKnown RBP8.62□□□□□ -1.03
RNF4-222ENST00000541204 CXCL5P42830 114 aa8.61□□□□□ -1.03
RNF4-222ENST00000541204 SS18Q15532 418 aa8.61□□□□□ -1.03
RNF4-222ENST00000541204 MAST4O15021 2626 aa8.61□□□□□ -1.03
RNF4-222ENST00000541204 PRR3P79522 188 aaKnown RBP8.61□□□□□ -1.03
RNF4-222ENST00000541204 OBSCN-AS1Q96MR7 158 aa8.6□□□□□ -1.03
RNF4-222ENST00000541204 KLK5Q9Y337 293 aaPredicted RBP8.6□□□□□ -1.03
RNF4-222ENST00000541204 LYRM9A8MSI8 78 aa8.6□□□□□ -1.03
RNF4-222ENST00000541204 LINC00846Q9NV44 126 aa8.6□□□□□ -1.03
RNF4-222ENST00000541204 Q8IZM0 81 aa8.59□□□□□ -1.03
RNF4-222ENST00000541204 C3orf22Q8N5N4 141 aa8.59□□□□□ -1.03
RNF4-222ENST00000541204 A0A1B0GUV1 79 aa8.59□□□□□ -1.03
RNF4-222ENST00000541204 C9orf153Q5TBE3 101 aa8.59□□□□□ -1.03
RNF4-222ENST00000541204 IGLV10-54A0A075B6I4 117 aa8.58□□□□□ -1.04
RNF4-222ENST00000541204 Q8NAQ8 132 aa8.58□□□□□ -1.04
RNF4-222ENST00000541204 IGKV3D-7A0A0C4DH55 119 aa8.58□□□□□ -1.04
RNF4-222ENST00000541204 LINC00269Q8N2A0 174 aa8.57□□□□□ -1.04
RNF4-222ENST00000541204 ORMDL1Q9P0S3 153 aa8.57□□□□□ -1.04
RNF4-222ENST00000541204 UQCRQO14949 82 aa8.57□□□□□ -1.04
RNF4-222ENST00000541204 WFDC9Q8NEX5 89 aa8.57□□□□□ -1.04
RNF4-222ENST00000541204 TMEM126AQ9H061 195 aa8.57□□□□□ -1.04
RNF4-222ENST00000541204 RETNQ9HD89 108 aa8.57□□□□□ -1.04
RNF4-222ENST00000541204 NANOS2P60321 138 aaKnown RBP8.56□□□□□ -1.04
RNF4-222ENST00000541204 ANGP03950 147 aaKnown RBP8.55□□□□□ -1.04
RNF4-222ENST00000541204 HIST1H4AP62805 103 aaKnown RBP8.55□□□□□ -1.04
RNF4-222ENST00000541204 C9orf116Q5BN46 136 aaPredicted RBP8.55□□□□□ -1.04
RNF4-222ENST00000541204 SPART-AS1P0CW21 52 aa8.55□□□□□ -1.04
RNF4-222ENST00000541204 MIFP14174 115 aa8.55□□□□□ -1.04
RNF4-222ENST00000541204 LINC00526Q96FQ7 95 aa8.55□□□□□ -1.04
RNF4-222ENST00000541204 NOTCH1P46531 2555 aa8.54□□□□□ -1.04
RNF4-222ENST00000541204 KRTAP10-11P60412 298 aa8.54□□□□□ -1.04
RNF4-222ENST00000541204 KIAA0087Q14695 138 aa8.54□□□□□ -1.04
RNF4-222ENST00000541204 KRTAP24-1Q3LI83 254 aa8.54□□□□□ -1.04
RNF4-222ENST00000541204 A0A087WVE0 104 aa8.54□□□□□ -1.04
RNF4-222ENST00000541204 COX7CP15954 63 aa8.53□□□□□ -1.04
RNF4-222ENST00000541204 Q6JHZ5 121 aa8.53□□□□□ -1.04
RNF4-222ENST00000541204 CFAP161Q6P656 301 aa8.53□□□□□ -1.04
RNF4-222ENST00000541204 LINC01561Q8N1V8 128 aa8.53□□□□□ -1.04
RNF4-222ENST00000541204 Q8N814 137 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms