RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 KRTAP1-4P0C5Y4 121 aa8.51□□□□□ -1.05
SNHG1-213ENST00000540725 S100PP25815 95 aa8.51□□□□□ -1.05
SNHG1-213ENST00000540725 C9orf129Q5T035 196 aaKnown RBP8.51□□□□□ -1.05
SNHG1-213ENST00000540725 LINC01561Q8N1V8 128 aa8.51□□□□□ -1.05
SNHG1-213ENST00000540725 C2orf88Q9BSF0 95 aa8.51□□□□□ -1.05
SNHG1-213ENST00000540725 MAP1LC3AQ9H492 121 aa8.51□□□□□ -1.05
SNHG1-213ENST00000540725 LAMTOR2Q9Y2Q5 125 aa8.51□□□□□ -1.05
SNHG1-213ENST00000540725 SMIM6P0DI80 62 aa8.5□□□□□ -1.05
SNHG1-213ENST00000540725 ZC2HC1BQ5TFG8 222 aa8.5□□□□□ -1.05
SNHG1-213ENST00000540725 C2orf66Q6UXQ4 117 aa8.5□□□□□ -1.05
SNHG1-213ENST00000540725 Q6ZN92 141 aa8.5□□□□□ -1.05
SNHG1-213ENST00000540725 LINC00173Q6ZV60 143 aa8.5□□□□□ -1.05
SNHG1-213ENST00000540725 CYSLTR1Q9Y271 337 aa8.5□□□□□ -1.05
SNHG1-213ENST00000540725 Q8N8P6 123 aa8.49□□□□□ -1.05
SNHG1-213ENST00000540725 TRAV9-1A0A075B6T8 112 aa8.48□□□□□ -1.05
SNHG1-213ENST00000540725 PRSS2P07478 247 aa8.48□□□□□ -1.05
SNHG1-213ENST00000540725 AKR1D1P51857 326 aa8.48□□□□□ -1.05
SNHG1-213ENST00000540725 S100A12P80511 92 aa8.48□□□□□ -1.05
SNHG1-213ENST00000540725 FABP9Q0Z7S8 132 aa8.48□□□□□ -1.05
SNHG1-213ENST00000540725 AMELXQ99217 191 aa8.48□□□□□ -1.05
SNHG1-213ENST00000540725 VCX2Q9H322 139 aa8.48□□□□□ -1.05
SNHG1-213ENST00000540725 TOMM7Q9P0U1 55 aa8.48□□□□□ -1.05
SNHG1-213ENST00000540725 HIST1H2BKO60814 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 HIST1H2BJP06899 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 HIST1H2BOP23527 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 HIST1H2BBP33778 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 HIST1H2BDP58876 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 CKS1BP61024 79 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 HIST1H2BCP62807 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 HIST2H2BEQ16778 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 ORMDL2Q53FV1 153 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.47□□□□□ -1.05
SNHG1-213ENST00000540725 HIST1H2BHQ93079 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 C12orf57Q99622 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 HIST1H2BNQ99877 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 HIST1H2BMQ99879 126 aa8.47□□□□□ -1.05
SNHG1-213ENST00000540725 IGIPA6NJ69 53 aa8.46□□□□□ -1.06
SNHG1-213ENST00000540725 TRGC2P03986 189 aa8.46□□□□□ -1.06
SNHG1-213ENST00000540725 NPSP0C0P6 89 aa8.46□□□□□ -1.06
SNHG1-213ENST00000540725 RPL13AP40429 203 aaKnown RBP8.46□□□□□ -1.06
SNHG1-213ENST00000540725 C6orf226Q5I0X4 101 aa8.46□□□□□ -1.06
SNHG1-213ENST00000540725 COA6Q5JTJ3 125 aaKnown RBP8.46□□□□□ -1.06
SNHG1-213ENST00000540725 FAM19A3Q7Z5A8 133 aa8.46□□□□□ -1.06
SNHG1-213ENST00000540725 Q8IZM0 81 aa8.46□□□□□ -1.06
SNHG1-213ENST00000540725 LINC00469Q8N7U9 141 aa8.46□□□□□ -1.06
SNHG1-213ENST00000540725 K7EMI3 77 aa8.45□□□□□ -1.06
SNHG1-213ENST00000540725 ALKBH7Q9BT30 221 aaPredicted RBP8.45□□□□□ -1.06
SNHG1-213ENST00000540725 ZNF861PO60384 105 aa8.44□□□□□ -1.06
SNHG1-213ENST00000540725 XAGE1AQ9HD64 81 aa8.44□□□□□ -1.06
SNHG1-213ENST00000540725 NXT2Q9NPJ8 142 aaKnown RBP8.44□□□□□ -1.06
SNHG1-213ENST00000540725 C22orf24Q9Y442 160 aa8.44□□□□□ -1.06
SNHG1-213ENST00000540725 NUPR1O60356 82 aa8.43□□□□□ -1.06
SNHG1-213ENST00000540725 HERVK_113P63121 156 aa8.43□□□□□ -1.06
SNHG1-213ENST00000540725 SEC11AP67812 179 aa8.43□□□□□ -1.06
SNHG1-213ENST00000540725 PAPPA-AS1Q5QFB9 102 aa8.43□□□□□ -1.06
SNHG1-213ENST00000540725 CDKN2A-AS1Q9UH64 79 aa8.43□□□□□ -1.06
SNHG1-213ENST00000540725 F8VRH5 84 aa8.42□□□□□ -1.06
SNHG1-213ENST00000540725 NDUFA6P56556 154 aa8.42□□□□□ -1.06
SNHG1-213ENST00000540725 PRR4Q16378 134 aa8.42□□□□□ -1.06
SNHG1-213ENST00000540725 LBHQ53QV2 105 aaPredicted RBP8.42□□□□□ -1.06
SNHG1-213ENST00000540725 GEMIN7Q9H840 131 aaKnown RBP8.42□□□□□ -1.06
SNHG1-213ENST00000540725 COX19Q49B96 90 aa8.41□□□□□ -1.06
SNHG1-213ENST00000540725 HIST3H2BBQ8N257 126 aa8.41□□□□□ -1.06
SNHG1-213ENST00000540725 TIMM17AQ99595 171 aa8.41□□□□□ -1.06
SNHG1-213ENST00000540725 G0S2P27469 103 aa8.4□□□□□ -1.06
SNHG1-213ENST00000540725 S100A2P29034 98 aa8.4□□□□□ -1.06
SNHG1-213ENST00000540725 TP73-AS1Q9UF72 201 aa8.4□□□□□ -1.06
SNHG1-213ENST00000540725 CXCL5P42830 114 aa8.39□□□□□ -1.07
SNHG1-213ENST00000540725 MRPL55Q7Z7F7 128 aaKnown RBP8.39□□□□□ -1.07
SNHG1-213ENST00000540725 TOMM6Q96B49 74 aa8.39□□□□□ -1.07
SNHG1-213ENST00000540725 KRTAP3-3Q9BYR6 98 aa8.38□□□□□ -1.07
SNHG1-213ENST00000540725 KRTAP3-2Q9BYR7 98 aa8.38□□□□□ -1.07
SNHG1-213ENST00000540725 SMIM1B2RUZ4 78 aa8.37□□□□□ -1.07
SNHG1-213ENST00000540725 RPL28P46779 137 aaKnown RBP8.37□□□□□ -1.07
SNHG1-213ENST00000540725 KIAA1644Q3SXP7 199 aa8.37□□□□□ -1.07
SNHG1-213ENST00000540725 ERASQ7Z444 233 aa8.37□□□□□ -1.07
SNHG1-213ENST00000540725 MUC2Q02817 5179 aa8.37□□□□□ -1.07
SNHG1-213ENST00000540725 BCE1O60756 84 aa8.36□□□□□ -1.07
SNHG1-213ENST00000540725 SCGB3A1Q96QR1 104 aa8.36□□□□□ -1.07
SNHG1-213ENST00000540725 TSPAN13O95857 204 aa8.35□□□□□ -1.07
SNHG1-213ENST00000540725 PDZD11Q5EBL8 140 aa8.35□□□□□ -1.07
SNHG1-213ENST00000540725 COX7B2Q8TF08 81 aa8.35□□□□□ -1.07
SNHG1-213ENST00000540725 GNB1LQ9BYB4 327 aa8.35□□□□□ -1.07
SNHG1-213ENST00000540725 TRAPPC1Q9Y5R8 145 aa8.35□□□□□ -1.07
SNHG1-213ENST00000540725 A0A087X002 238 aa8.35□□□□□ -1.07
SNHG1-213ENST00000540725 TINCRA0A1B0GVN0 87 aa8.35□□□□□ -1.07
SNHG1-213ENST00000540725 LINC00167Q96N53 147 aa8.35□□□□□ -1.07
SNHG1-213ENST00000540725 HIST1H2BLQ99880 126 aa8.35□□□□□ -1.07
SNHG1-213ENST00000540725 IGLV5-45A0A087WSX0 123 aa8.34□□□□□ -1.07
SNHG1-213ENST00000540725 RPL37AP8A6NKH3 93 aa8.34□□□□□ -1.07
SNHG1-213ENST00000540725 PYY3Q5JQD4 70 aa8.34□□□□□ -1.07
SNHG1-213ENST00000540725 GAGE10A6NGK3 116 aa8.33□□□□□ -1.08
SNHG1-213ENST00000540725 CRYGAP11844 174 aa8.33□□□□□ -1.08
SNHG1-213ENST00000540725 LINC01549A6NIU2 74 aa8.32□□□□□ -1.08
SNHG1-213ENST00000540725 SPINK8P0C7L1 97 aa8.32□□□□□ -1.08
SNHG1-213ENST00000540725 JOSD1Q15040 202 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-213ENST00000540725 TYMSOSQ8TAI1 123 aa8.32□□□□□ -1.08
SNHG1-213ENST00000540725 IGLV5-37A0A075B6J1 123 aa8.31□□□□□ -1.08
SNHG1-213ENST00000540725 PCP4L1A6NKN8 68 aa8.31□□□□□ -1.08
SNHG1-213ENST00000540725 FABP4P15090 132 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms