RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 G0S2P27469 103 aa6.7□□□□□ -1.34
HMGA2-209ENST00000539662 RPL18AQ02543 176 aaKnown RBP6.7□□□□□ -1.34
HMGA2-209ENST00000539662 PDZD11Q5EBL8 140 aa6.7□□□□□ -1.34
HMGA2-209ENST00000539662 Q6ZRP5 223 aa6.7□□□□□ -1.34
HMGA2-209ENST00000539662 TOMM7Q9P0U1 55 aa6.7□□□□□ -1.34
HMGA2-209ENST00000539662 TINCRA0A1B0GVN0 87 aa6.69□□□□□ -1.34
HMGA2-209ENST00000539662 FAM168BA1KXE4 195 aa6.69□□□□□ -1.34
HMGA2-209ENST00000539662 HBDP02042 147 aa6.69□□□□□ -1.34
HMGA2-209ENST00000539662 LINC00310P59036 64 aa6.69□□□□□ -1.34
HMGA2-209ENST00000539662 HERVK_113P63121 156 aa6.69□□□□□ -1.34
HMGA2-209ENST00000539662 PMVKQ15126 192 aa6.69□□□□□ -1.34
HMGA2-209ENST00000539662 RNF151Q2KHN1 245 aa6.69□□□□□ -1.34
HMGA2-209ENST00000539662 PAPPA-AS1Q5QFB9 102 aa6.69□□□□□ -1.34
HMGA2-209ENST00000539662 KRTAP7-1Q8IUC3 87 aa6.69□□□□□ -1.34
HMGA2-209ENST00000539662 LINC01561Q8N1V8 128 aa6.69□□□□□ -1.34
HMGA2-209ENST00000539662 GEMIN7Q9H840 131 aaKnown RBP6.69□□□□□ -1.34
HMGA2-209ENST00000539662 DMBT1Q9UGM3 2413 aaPredicted RBP6.69□□□□□ -1.34
HMGA2-209ENST00000539662 IGLV5-45A0A087WSX0 123 aa6.68□□□□□ -1.34
HMGA2-209ENST00000539662 SMIM1B2RUZ4 78 aa6.68□□□□□ -1.34
HMGA2-209ENST00000539662 SPINK8P0C7L1 97 aa6.68□□□□□ -1.34
HMGA2-209ENST00000539662 NDUFA6P56556 154 aa6.68□□□□□ -1.34
HMGA2-209ENST00000539662 LINC00469Q8N7U9 141 aa6.68□□□□□ -1.34
HMGA2-209ENST00000539662 NUPR1O60356 82 aa6.67□□□□□ -1.34
HMGA2-209ENST00000539662 GAGE2EQ4V326 116 aa6.67□□□□□ -1.34
HMGA2-209ENST00000539662 FAM19A2Q8N3H0 131 aa6.67□□□□□ -1.34
HMGA2-209ENST00000539662 GAGE2DQ9UEU5 116 aa6.67□□□□□ -1.34
HMGA2-209ENST00000539662 F8WDY8 70 aa6.66□□□□□ -1.34
HMGA2-209ENST00000539662 TLX1NBP0CAT3 122 aa6.66□□□□□ -1.34
HMGA2-209ENST00000539662 IGLC3P0DOY3 106 aa6.66□□□□□ -1.34
HMGA2-209ENST00000539662 SEC11AP67812 179 aa6.66□□□□□ -1.34
HMGA2-209ENST00000539662 C6orf226Q5I0X4 101 aa6.66□□□□□ -1.34
HMGA2-209ENST00000539662 PHF5AQ7RTV0 110 aaKnown RBP6.66□□□□□ -1.34
HMGA2-209ENST00000539662 KRTAP11-1Q8IUC1 163 aa6.66□□□□□ -1.34
HMGA2-209ENST00000539662 Q8IZM0 81 aa6.66□□□□□ -1.34
HMGA2-209ENST00000539662 LINC00474Q9P2X8 69 aa6.66□□□□□ -1.34
HMGA2-209ENST00000539662 LINC01549A6NIU2 74 aa6.65□□□□□ -1.34
HMGA2-209ENST00000539662 PRSS2P07478 247 aa6.65□□□□□ -1.34
HMGA2-209ENST00000539662 ZNF22P17026 224 aaPredicted RBP6.65□□□□□ -1.34
HMGA2-209ENST00000539662 RAB5BP61020 215 aa6.65□□□□□ -1.34
HMGA2-209ENST00000539662 C9orf129Q5T035 196 aaKnown RBP6.65□□□□□ -1.34
HMGA2-209ENST00000539662 PACRGQ96M98 296 aaPredicted RBP6.65□□□□□ -1.34
HMGA2-209ENST00000539662 TRBV30A0A0K0K1B3 111 aa6.64□□□□□ -1.35
HMGA2-209ENST00000539662 C11orf86A6NJI1 115 aa6.64□□□□□ -1.35
HMGA2-209ENST00000539662 CKS1BP61024 79 aa6.64□□□□□ -1.35
HMGA2-209ENST00000539662 PRR3P79522 188 aaKnown RBP6.64□□□□□ -1.35
HMGA2-209ENST00000539662 BAGE3Q86Y29 109 aa6.64□□□□□ -1.35
HMGA2-209ENST00000539662 COX7B2Q8TF08 81 aa6.64□□□□□ -1.35
HMGA2-209ENST00000539662 C7orf33Q8WU49 177 aa6.64□□□□□ -1.35
HMGA2-209ENST00000539662 CHCHD1Q96BP2 118 aaKnown RBP6.64□□□□□ -1.35
HMGA2-209ENST00000539662 NDUFC2-KCTD14E9PQ53 114 aa6.63□□□□□ -1.35
HMGA2-209ENST00000539662 SERF1AO75920 110 aa6.63□□□□□ -1.35
HMGA2-209ENST00000539662 FAM19A5Q7Z5A7 132 aaPredicted RBP6.63□□□□□ -1.35
HMGA2-209ENST00000539662 PKIGQ9Y2B9 76 aa6.63□□□□□ -1.35
HMGA2-209ENST00000539662 KRTAP29-1A8MX34 341 aaPredicted RBP6.62□□□□□ -1.35
HMGA2-209ENST00000539662 F8VRH5 84 aa6.62□□□□□ -1.35
HMGA2-209ENST00000539662 ATP5LO75964 103 aa6.62□□□□□ -1.35
HMGA2-209ENST00000539662 IFI27L1Q96BM0 104 aa6.62□□□□□ -1.35
HMGA2-209ENST00000539662 XAGE1AQ9HD64 81 aa6.62□□□□□ -1.35
HMGA2-209ENST00000539662 IGLV5-39A0A0G2JS06 123 aa6.61□□□□□ -1.35
HMGA2-209ENST00000539662 HSBP1O75506 76 aa6.61□□□□□ -1.35
HMGA2-209ENST00000539662 SERTAD4-AS1Q5TG53 156 aa6.61□□□□□ -1.35
HMGA2-209ENST00000539662 PSORS1C2Q9UIG4 136 aa6.61□□□□□ -1.35
HMGA2-209ENST00000539662 CHTOPQ9Y3Y2 248 aaKnown RBP6.61□□□□□ -1.35
HMGA2-209ENST00000539662 H0Y8G0 127 aa6.59□□□□□ -1.35
HMGA2-209ENST00000539662 H3BRM9 83 aa6.59□□□□□ -1.35
HMGA2-209ENST00000539662 LCE2BO14633 110 aa6.59□□□□□ -1.35
HMGA2-209ENST00000539662 TMEM170BQ5T4T1 132 aa6.59□□□□□ -1.35
HMGA2-209ENST00000539662 TNXBP22105 4242 aa6.58□□□□□ -1.36
HMGA2-209ENST00000539662 TRAV12-1A0A0B4J245 112 aa6.58□□□□□ -1.36
HMGA2-209ENST00000539662 MT1HL1P0DM35 61 aa6.58□□□□□ -1.36
HMGA2-209ENST00000539662 FABP4P15090 132 aa6.58□□□□□ -1.36
HMGA2-209ENST00000539662 SRSF9Q13242 221 aaKnown RBP eCLIP6.58□□□□□ -1.366e-10■■■■■ 30.8
HMGA2-209ENST00000539662 PET117Q6UWS5 81 aa6.58□□□□□ -1.36
HMGA2-209ENST00000539662 ZNF625Q96I27 306 aaPredicted RBP6.58□□□□□ -1.36
HMGA2-209ENST00000539662 TMEM223A0PJW6 202 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 M0QXV9 152 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST1H2BKO60814 126 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST1H2BJP06899 126 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST1H2BOP23527 126 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST1H2BBP33778 126 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 CXCL5P42830 114 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST1H2BDP58876 126 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST1H2BCP62807 126 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST2H2BEQ16778 126 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST1H2BHQ93079 126 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST1H2BNQ99877 126 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 HIST1H2BMQ99879 126 aa6.57□□□□□ -1.36
HMGA2-209ENST00000539662 LEPROTL1O95214 131 aa6.56□□□□□ -1.36
HMGA2-209ENST00000539662 OXTP01178 125 aa6.56□□□□□ -1.36
HMGA2-209ENST00000539662 PFN2P35080 140 aa6.56□□□□□ -1.36
HMGA2-209ENST00000539662 C1orf137Q5JT78 98 aa6.56□□□□□ -1.36
HMGA2-209ENST00000539662 PMCHL2Q9BQD1 86 aa6.56□□□□□ -1.36
HMGA2-209ENST00000539662 C22orf24Q9Y442 160 aa6.56□□□□□ -1.36
HMGA2-209ENST00000539662 Q8NDZ9 215 aa6.54□□□□□ -1.36
HMGA2-209ENST00000539662 TSPEAR-AS2P59090 65 aa6.53□□□□□ -1.36
HMGA2-209ENST00000539662 SPINK6Q6UWN8 80 aa6.53□□□□□ -1.36
HMGA2-209ENST00000539662 ERG28Q9UKR5 140 aa6.53□□□□□ -1.36
HMGA2-209ENST00000539662 A0A0U1RRA0 63 aa6.52□□□□□ -1.37
HMGA2-209ENST00000539662 A4D1N5 150 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms