RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 CSNK1G2-AS1Q8NCQ2 148 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 B9D2Q9BPU9 175 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 SND1-IT1Q9HBX3 110 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 KLK9Q9UKQ9 250 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 PDE4DIPQ5VU43 2346 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 DNAJC13O75165 2243 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 CADP27708 2225 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 F5P12259 2224 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 IGHV3-49A0A0A0MS15 119 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 IGHV3-21A0A0B4J1V1 117 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 TRBV6-4A0A1B0GX49 114 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 IGKV4-1P06312 121 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 RNASE3P12724 160 aaKnown RBP1.61□□□□□ -2.15
SKA3-207ENST00000536239 RNASE13Q5GAN3 156 aaKnown RBP1.61□□□□□ -2.15
SKA3-207ENST00000536239 ATP1A1-AS1Q5TC04 95 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 CXCL17Q6UXB2 119 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 ZFAND2AQ8N6M9 145 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 ZNRF1Q8ND25 227 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 PATE1Q8WXA2 126 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 FAM104AQ969W3 186 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 LINC00208Q96KT6 92 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 RETNLBQ9BQ08 111 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 CDKN2A-AS1Q9UH64 79 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 ZNF706Q9Y5V0 76 aaPredicted RBP1.61□□□□□ -2.15
SKA3-207ENST00000536239 A0A0C4DFX4 3053 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 MUC4Q99102 2169 aa1.61□□□□□ -2.15
SKA3-207ENST00000536239 SVILO95425 2214 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 IGLV11-55A0A075B6I3 123 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.6□□□□□ -2.15
SKA3-207ENST00000536239 IGHV3-73A0A0B4J1V6 119 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 IGHV1-3A0A0C4DH29 117 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 IGHV3-16A0A0C4DH30 117 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 IGHV3-20A0A0C4DH32 117 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 ETDCA0A1B0GVM5 59 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 CLPSL1A2RUU4 121 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 H3BPC8 53 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 TFF1P04155 84 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 CNBPP62633 177 aaKnown RBP1.6□□□□□ -2.15
SKA3-207ENST00000536239 FDCSPQ8NFU4 85 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 PLAC8Q9NZF1 115 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 LINC01558Q9Y6Z2 57 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 S4R3C0 116 aa1.6□□□□□ -2.15
SKA3-207ENST00000536239 NAV3Q8IVL0 2385 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 TRGV2A0A075B6R0 118 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 PINLYPA6NC86 204 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 RPL37AP8A6NKH3 93 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 NDUFA4O00483 81 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 IGLV1-51P01701 117 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 IGHV3-53P01767 116 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 CCL3P10147 92 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 PRB4P10163 310 aaPredicted RBP1.59□□□□□ -2.15
SKA3-207ENST00000536239 COX7BP24311 80 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 CCL18P55774 89 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 BSPH1Q075Z2 132 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 PRR9Q5T870 116 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 LINC00575Q6W349 94 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 MUC7Q8TAX7 377 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 WFDC10AQ9H1F0 79 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 KCNQ1DNQ9H478 68 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 ZNF702PQ9H963 129 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 XAGE1AQ9HD64 81 aa1.59□□□□□ -2.15
SKA3-207ENST00000536239 IGLV4-60A0A075B6I1 120 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.58□□□□□ -2.16
SKA3-207ENST00000536239 IGHV7-81A0A0B4J1V7 117 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 IGHV3-64DA0A0J9YX35 117 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 SPTY2D1-AS1A0A0U1RR47 76 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 LINC00158P58513 81 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 COX6A2Q02221 97 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 KLK9Q2XQG4 91 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 LINC00242Q5T6M2 205 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 C11orf71Q6IPW1 123 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 COX7B2Q8TF08 81 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 CHCHD10Q8WYQ3 142 aaPredicted RBP1.58□□□□□ -2.16
SKA3-207ENST00000536239 GAFA1Q96PS6 74 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 LINC00467Q9BRT7 94 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 CHCHD7Q9BUK0 85 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 CNTRLQ7Z7A1 2325 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 BRWD1Q9NSI6 2320 aa1.58□□□□□ -2.16
SKA3-207ENST00000536239 CR1P17927 2039 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 KIAA0100Q14667 2235 aaKnown RBP1.57□□□□□ -2.16
SKA3-207ENST00000536239 IGHV3OR16-12A0A075B7B8 117 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 IGHV3OR16-13A0A075B7E8 117 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 IGHV3-72A0A0B4J1Y9 119 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 FAM168BA1KXE4 195 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 B4DSR2 109 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 M0R2N4 97 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 APELAP0DMC3 54 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 IGHV1-8P0DP01 117 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 CCL5P13501 91 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 SPAG11BQ08648 103 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 COX17Q14061 63 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.57□□□□□ -2.16
SKA3-207ENST00000536239 Q8NAQ8 132 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 NPBQ8NG41 125 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 LINC01006Q8NI28 216 aa1.57□□□□□ -2.16
SKA3-207ENST00000536239 PTPRQQ9UMZ3 2332 aa1.56□□□□□ -2.16
SKA3-207ENST00000536239 IGHV3OR16-8A0A075B7F1 116 aa1.56□□□□□ -2.16
SKA3-207ENST00000536239 A0A096LNT2 108 aa1.56□□□□□ -2.16
SKA3-207ENST00000536239 IGHV3-35A0A0C4DH35 117 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms