RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 HIGD1BQ9P298 99 aa10.53□□□□□ -0.72
TRIM3-213ENST00000533309 GVQW2A0A096LPI5 108 aaPredicted RBP10.52□□□□□ -0.73
TRIM3-213ENST00000533309 SCGB1D4Q6XE38 83 aa10.52□□□□□ -0.73
TRIM3-213ENST00000533309 DNAH17Q9UFH2 4485 aa10.52□□□□□ -0.73
TRIM3-213ENST00000533309 USP17L23D6RBM5 183 aa10.51□□□□□ -0.73
TRIM3-213ENST00000533309 CFAP161Q6P656 301 aa10.51□□□□□ -0.73
TRIM3-213ENST00000533309 WFDC2Q14508 124 aa10.51□□□□□ -0.73
TRIM3-213ENST00000533309 NTN5Q8WTR8 489 aaPredicted RBP10.51□□□□□ -0.73
TRIM3-213ENST00000533309 LITAFQ99732 161 aa10.51□□□□□ -0.73
TRIM3-213ENST00000533309 CXCL5P42830 114 aa10.5□□□□□ -0.73
TRIM3-213ENST00000533309 CKS1BP61024 79 aa10.5□□□□□ -0.73
TRIM3-213ENST00000533309 HERV-K104P63124 156 aa10.5□□□□□ -0.73
TRIM3-213ENST00000533309 LECT2O14960 151 aa10.49□□□□□ -0.73
TRIM3-213ENST00000533309 CTAG1AP78358 180 aa10.49□□□□□ -0.73
TRIM3-213ENST00000533309 C10orf25Q5T742 122 aa10.49□□□□□ -0.73
TRIM3-213ENST00000533309 SFTA2Q6UW10 78 aa10.49□□□□□ -0.73
TRIM3-213ENST00000533309 LINC00587B1AMM8 73 aa10.48□□□□□ -0.73
TRIM3-213ENST00000533309 ZNF561-AS1K7EIQ3 104 aa10.48□□□□□ -0.73
TRIM3-213ENST00000533309 PSCAO43653 123 aa10.48□□□□□ -0.73
TRIM3-213ENST00000533309 FRAS1Q86XX4 4008 aa10.48□□□□□ -0.73
TRIM3-213ENST00000533309 UNQ6190/PRO20217Q6UXQ8 127 aa10.47□□□□□ -0.73
TRIM3-213ENST00000533309 ADAMTSL4-AS1Q5T5F5 129 aa10.47□□□□□ -0.73
TRIM3-213ENST00000533309 C2orf48Q96LS8 159 aa10.47□□□□□ -0.73
TRIM3-213ENST00000533309 TIMM17BO60830 172 aa10.46□□□□□ -0.74
TRIM3-213ENST00000533309 SPANXB1Q9NS25 103 aaPredicted RBP10.46□□□□□ -0.74
TRIM3-213ENST00000533309 LRCOL1A6NCL2 159 aa10.45□□□□□ -0.74
TRIM3-213ENST00000533309 MEIG1Q5JSS6 88 aa10.45□□□□□ -0.74
TRIM3-213ENST00000533309 CAMK2N2Q96S95 79 aa10.45□□□□□ -0.74
TRIM3-213ENST00000533309 TMEM238C9JI98 176 aa10.44□□□□□ -0.74
TRIM3-213ENST00000533309 SLPIP03973 132 aa10.44□□□□□ -0.74
TRIM3-213ENST00000533309 SMIM13P0DJ93 91 aa10.44□□□□□ -0.74
TRIM3-213ENST00000533309 Q6ZRU5 148 aa10.44□□□□□ -0.74
TRIM3-213ENST00000533309 C6orf48Q9UBA6 75 aa10.44□□□□□ -0.74
TRIM3-213ENST00000533309 ERG28Q9UKR5 140 aa10.44□□□□□ -0.74
TRIM3-213ENST00000533309 A0A0U1RRA0 63 aa10.44□□□□□ -0.74
TRIM3-213ENST00000533309 HSD52Q0P140 79 aa10.44□□□□□ -0.74
TRIM3-213ENST00000533309 C9orf116Q5BN46 136 aaPredicted RBP10.44□□□□□ -0.74
TRIM3-213ENST00000533309 C1orf134Q5TEV5 83 aa10.44□□□□□ -0.74
TRIM3-213ENST00000533309 F8WDY8 70 aa10.43□□□□□ -0.74
TRIM3-213ENST00000533309 DAND5Q8N907 189 aa10.43□□□□□ -0.74
TRIM3-213ENST00000533309 HIST1H4GQ99525 98 aa10.43□□□□□ -0.74
TRIM3-213ENST00000533309 LCE6AA0A183 80 aa10.42□□□□□ -0.74
TRIM3-213ENST00000533309 SYCNQ0VAF6 134 aa10.42□□□□□ -0.74
TRIM3-213ENST00000533309 CIRBPQ14011 172 aaKnown RBP10.42□□□□□ -0.74
TRIM3-213ENST00000533309 TAL2Q16559 108 aa10.42□□□□□ -0.74
TRIM3-213ENST00000533309 SPANXDQ9BXN6 97 aa10.42□□□□□ -0.74
TRIM3-213ENST00000533309 SPANXCQ9NY87 97 aa10.42□□□□□ -0.74
TRIM3-213ENST00000533309 KMT2CQ8NEZ4 4911 aaKnown RBP10.41□□□□□ -0.74
TRIM3-213ENST00000533309 TRBV30A0A0K0K1B3 111 aa10.41□□□□□ -0.74
TRIM3-213ENST00000533309 PFN2P35080 140 aa10.41□□□□□ -0.74
TRIM3-213ENST00000533309 SRSF9Q13242 221 aaKnown RBP eCLIP10.41□□□□□ -0.74
TRIM3-213ENST00000533309 FAT2Q9NYQ8 4349 aa10.41□□□□□ -0.74
TRIM3-213ENST00000533309 EIF4EBP3O60516 100 aaPredicted RBP10.4□□□□□ -0.74
TRIM3-213ENST00000533309 HINT1P49773 126 aaPredicted RBP10.4□□□□□ -0.74
TRIM3-213ENST00000533309 LINC00158P58513 81 aa10.4□□□□□ -0.75
TRIM3-213ENST00000533309 BVES-AS1Q5T3Y7 98 aa10.4□□□□□ -0.75
TRIM3-213ENST00000533309 CEND1Q8N111 149 aa10.4□□□□□ -0.75
TRIM3-213ENST00000533309 MIR7-3HGQ8N6C7 128 aa10.4□□□□□ -0.75
TRIM3-213ENST00000533309 GCSHP23434 173 aa10.39□□□□□ -0.75
TRIM3-213ENST00000533309 COX17Q14061 63 aa10.39□□□□□ -0.75
TRIM3-213ENST00000533309 C14orf177Q52M58 125 aa10.39□□□□□ -0.75
TRIM3-213ENST00000533309 Q6ZVH6 145 aa10.39□□□□□ -0.75
TRIM3-213ENST00000533309 CARD19Q96LW7 228 aa10.39□□□□□ -0.75
TRIM3-213ENST00000533309 SNHG12Q9BXW3 62 aa10.39□□□□□ -0.75
TRIM3-213ENST00000533309 DNAH11Q96DT5 4516 aa10.39□□□□□ -0.75
TRIM3-213ENST00000533309 RYR2Q92736 4967 aa10.38□□□□□ -0.75
TRIM3-213ENST00000533309 EREGO14944 169 aa10.38□□□□□ -0.75
TRIM3-213ENST00000533309 FXYD2P54710 66 aa10.38□□□□□ -0.75
TRIM3-213ENST00000533309 SOSTDC1Q6X4U4 206 aa10.38□□□□□ -0.75
TRIM3-213ENST00000533309 HECTD4Q9Y4D8 3996 aa10.38□□□□□ -0.75
TRIM3-213ENST00000533309 A0A087WTM6 91 aa10.37□□□□□ -0.75
TRIM3-213ENST00000533309 NPC2P61916 151 aa10.37□□□□□ -0.75
TRIM3-213ENST00000533309 CNBPP62633 177 aaKnown RBP10.37□□□□□ -0.75
TRIM3-213ENST00000533309 MUSTN1Q8IVN3 82 aa10.37□□□□□ -0.75
TRIM3-213ENST00000533309 M0R143 59 aa10.36□□□□□ -0.75
TRIM3-213ENST00000533309 RTL8CO15255 209 aa10.36□□□□□ -0.75
TRIM3-213ENST00000533309 PTTG1IPP53801 180 aa10.36□□□□□ -0.75
TRIM3-213ENST00000533309 RNF151Q2KHN1 245 aa10.36□□□□□ -0.75
TRIM3-213ENST00000533309 LINC00308Q8TCZ7 52 aa10.36□□□□□ -0.75
TRIM3-213ENST00000533309 Q8N814 137 aa10.36□□□□□ -0.75
TRIM3-213ENST00000533309 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.35□□□□□ -0.75
TRIM3-213ENST00000533309 IFITM1P13164 125 aa10.35□□□□□ -0.75
TRIM3-213ENST00000533309 BATFQ16520 125 aa10.34□□□□□ -0.75
TRIM3-213ENST00000533309 NDUFC2-KCTD14E9PQ53 114 aa10.33□□□□□ -0.76
TRIM3-213ENST00000533309 SND1-IT1Q9HBX3 110 aa10.33□□□□□ -0.76
TRIM3-213ENST00000533309 TNP2Q05952 138 aa10.33□□□□□ -0.76
TRIM3-213ENST00000533309 PPDPFQ9H3Y8 114 aa10.33□□□□□ -0.76
TRIM3-213ENST00000533309 LOC107984156A0A0G2JMH3 177 aa10.32□□□□□ -0.76
TRIM3-213ENST00000533309 A4D1N5 150 aa10.32□□□□□ -0.76
TRIM3-213ENST00000533309 TLX1NBP0CAT3 122 aa10.32□□□□□ -0.76
TRIM3-213ENST00000533309 Q6ZRP5 223 aa10.32□□□□□ -0.76
TRIM3-213ENST00000533309 ARL17AQ8IVW1 177 aa10.32□□□□□ -0.76
TRIM3-213ENST00000533309 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.31□□□□□ -0.76
TRIM3-213ENST00000533309 RPL24P83731 157 aaKnown RBP10.31□□□□□ -0.76
TRIM3-213ENST00000533309 PKD1P98161 4303 aa10.3□□□□□ -0.76
TRIM3-213ENST00000533309 XAGE1AQ9HD64 81 aa10.29□□□□□ -0.76
TRIM3-213ENST00000533309 NHP2Q9NX24 153 aaKnown RBP10.29□□□□□ -0.76
TRIM3-213ENST00000533309 DNAH5Q8TE73 4624 aa10.29□□□□□ -0.76
TRIM3-213ENST00000533309 COPS9Q8WXC6 57 aa10.29□□□□□ -0.76
TRIM3-213ENST00000533309 TMEM238LA0A1B0GVL6 79 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms