RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-223ENST00000533079 LINC00269Q8N2A0 174 aa7.82□□□□□ -1.16
CAPN1-223ENST00000533079 AMELXQ99217 191 aa7.82□□□□□ -1.16
CAPN1-223ENST00000533079 MRPL35Q9NZE8 188 aaKnown RBP7.82□□□□□ -1.16
CAPN1-223ENST00000533079 TRAV8-4A0A0B4J246 113 aa7.81□□□□□ -1.16
CAPN1-223ENST00000533079 RBX1P62877 108 aa7.81□□□□□ -1.16
CAPN1-223ENST00000533079 CLPSL2Q6UWE3 100 aa7.81□□□□□ -1.16
CAPN1-223ENST00000533079 SPINK6Q6UWN8 80 aa7.81□□□□□ -1.16
CAPN1-223ENST00000533079 IGLV4-3A0A075B6K6 122 aa7.8□□□□□ -1.16
CAPN1-223ENST00000533079 COX8AP10176 69 aa7.8□□□□□ -1.16
CAPN1-223ENST00000533079 REG3AQ06141 175 aa7.8□□□□□ -1.16
CAPN1-223ENST00000533079 VCX2Q9H322 139 aa7.8□□□□□ -1.16
CAPN1-223ENST00000533079 UBE2D4Q9Y2X8 147 aa7.8□□□□□ -1.16
CAPN1-223ENST00000533079 TRBV25-1A0A075B6N4 114 aa7.79□□□□□ -1.16
CAPN1-223ENST00000533079 SLC25A34Q6PIV7 304 aa7.79□□□□□ -1.16
CAPN1-223ENST00000533079 NTM-AS1Q6ZSK4 140 aa7.79□□□□□ -1.16
CAPN1-223ENST00000533079 FAM104AQ969W3 186 aa7.79□□□□□ -1.16
CAPN1-223ENST00000533079 IGLV10-54A0A075B6I4 117 aa7.78□□□□□ -1.16
CAPN1-223ENST00000533079 ANKRD39Q53RE8 183 aa7.78□□□□□ -1.16
CAPN1-223ENST00000533079 BOD1L2Q8IYS8 172 aa7.78□□□□□ -1.16
CAPN1-223ENST00000533079 STPG4Q8N801 248 aa7.78□□□□□ -1.16
CAPN1-223ENST00000533079 C14orf144Q96I85 54 aa7.78□□□□□ -1.16
CAPN1-223ENST00000533079 IGLV4-69A0A075B6H9 119 aa7.77□□□□□ -1.17
CAPN1-223ENST00000533079 SLPIP03973 132 aa7.77□□□□□ -1.17
CAPN1-223ENST00000533079 LBHQ53QV2 105 aaPredicted RBP7.77□□□□□ -1.17
CAPN1-223ENST00000533079 ZC2HC1BQ5TFG8 222 aa7.77□□□□□ -1.17
CAPN1-223ENST00000533079 TMEM243Q9BU79 118 aa7.77□□□□□ -1.17
CAPN1-223ENST00000533079 KRTAP9-2Q9BYQ4 174 aa7.77□□□□□ -1.17
CAPN1-223ENST00000533079 LPAP08519 4548 aa7.77□□□□□ -1.17
CAPN1-223ENST00000533079 C11orf86A6NJI1 115 aa7.76□□□□□ -1.17
CAPN1-223ENST00000533079 FGF6P10767 208 aa7.76□□□□□ -1.17
CAPN1-223ENST00000533079 ZNF25P17030 456 aaPredicted RBP7.76□□□□□ -1.17
CAPN1-223ENST00000533079 GAGE6Q13070 117 aa7.76□□□□□ -1.17
CAPN1-223ENST00000533079 FAM19A3Q7Z5A8 133 aa7.76□□□□□ -1.17
CAPN1-223ENST00000533079 PKIGQ9Y2B9 76 aa7.76□□□□□ -1.17
CAPN1-223ENST00000533079 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.75□□□□□ -1.17
CAPN1-223ENST00000533079 A0A0U1RQV1 116 aa7.75□□□□□ -1.17
CAPN1-223ENST00000533079 IGKV2-29A2NJV5 120 aaPredicted RBP7.75□□□□□ -1.17
CAPN1-223ENST00000533079 E9PLD3 99 aa7.75□□□□□ -1.17
CAPN1-223ENST00000533079 COX6A2Q02221 97 aa7.75□□□□□ -1.17
CAPN1-223ENST00000533079 CFAP161Q6P656 301 aa7.75□□□□□ -1.17
CAPN1-223ENST00000533079 OPRPNQ99935 248 aaPredicted RBP7.75□□□□□ -1.17
CAPN1-223ENST00000533079 LINC00474Q9P2X8 69 aa7.75□□□□□ -1.17
CAPN1-223ENST00000533079 A0A1B0GUV1 79 aa7.74□□□□□ -1.17
CAPN1-223ENST00000533079 TINCRA0A1B0GVN0 87 aa7.74□□□□□ -1.17
CAPN1-223ENST00000533079 M0R143 59 aa7.74□□□□□ -1.17
CAPN1-223ENST00000533079 C2orf88Q9BSF0 95 aa7.74□□□□□ -1.17
CAPN1-223ENST00000533079 HERVK_113P61574 105 aa7.73□□□□□ -1.17
CAPN1-223ENST00000533079 SEC11AP67812 179 aa7.73□□□□□ -1.17
CAPN1-223ENST00000533079 Q6ZRP5 223 aa7.73□□□□□ -1.17
CAPN1-223ENST00000533079 C15orf56Q8N910 161 aa7.73□□□□□ -1.17
CAPN1-223ENST00000533079 CDC42SE2Q9NRR3 84 aa7.73□□□□□ -1.17
CAPN1-223ENST00000533079 HIGD1BQ9P298 99 aa7.73□□□□□ -1.17
CAPN1-223ENST00000533079 IGKV2-24A0A0C4DH68 120 aa7.72□□□□□ -1.17
CAPN1-223ENST00000533079 UBE2L6O14933 153 aa7.72□□□□□ -1.17
CAPN1-223ENST00000533079 UBE2D1P51668 147 aa7.72□□□□□ -1.17
CAPN1-223ENST00000533079 CTAG1AP78358 180 aa7.72□□□□□ -1.17
CAPN1-223ENST00000533079 SRSF9Q13242 221 aaKnown RBP eCLIP7.72□□□□□ -1.17
CAPN1-223ENST00000533079 OR5A1Q8NGJ0 315 aa7.72□□□□□ -1.17
CAPN1-223ENST00000533079 TMEM101Q96IK0 257 aa7.72□□□□□ -1.17
CAPN1-223ENST00000533079 IGLV5-45A0A087WSX0 123 aa7.71□□□□□ -1.18
CAPN1-223ENST00000533079 IGKV2D-26A0A0A0MRZ7 120 aa7.71□□□□□ -1.18
CAPN1-223ENST00000533079 NMUP48645 174 aa7.71□□□□□ -1.18
CAPN1-223ENST00000533079 AMMECR1LQ6DCA0 310 aa7.71□□□□□ -1.18
CAPN1-223ENST00000533079 Q6ZUT4 128 aa7.71□□□□□ -1.18
CAPN1-223ENST00000533079 PCP2Q8IVA1 136 aa7.71□□□□□ -1.18
CAPN1-223ENST00000533079 MUC2Q02817 5179 aa7.71□□□□□ -1.18
CAPN1-223ENST00000533079 TMEM223A0PJW6 202 aa7.7□□□□□ -1.18
CAPN1-223ENST00000533079 ZNF22P17026 224 aaPredicted RBP7.7□□□□□ -1.18
CAPN1-223ENST00000533079 C2orf91Q6ZV80 131 aa7.7□□□□□ -1.18
CAPN1-223ENST00000533079 SNHG12Q9BXW3 62 aa7.7□□□□□ -1.18
CAPN1-223ENST00000533079 IGLV4-60A0A075B6I1 120 aa7.69□□□□□ -1.18
CAPN1-223ENST00000533079 A0A096LNI7 61 aa7.69□□□□□ -1.18
CAPN1-223ENST00000533079 GVQW2A0A096LPI5 108 aaPredicted RBP7.69□□□□□ -1.18
CAPN1-223ENST00000533079 CCL25O15444 150 aa7.69□□□□□ -1.18
CAPN1-223ENST00000533079 HERVK_113P63121 156 aa7.69□□□□□ -1.18
CAPN1-223ENST00000533079 TMEM170BQ5T4T1 132 aa7.69□□□□□ -1.18
CAPN1-223ENST00000533079 MYMXA0A1B0GTQ4 84 aa7.68□□□□□ -1.18
CAPN1-223ENST00000533079 LEPROTO15243 131 aa7.68□□□□□ -1.18
CAPN1-223ENST00000533079 PLEKHB2Q96CS7 222 aa7.68□□□□□ -1.18
CAPN1-223ENST00000533079 H3BRM9 83 aa7.67□□□□□ -1.18
CAPN1-223ENST00000533079 TAL2Q16559 108 aa7.67□□□□□ -1.18
CAPN1-223ENST00000533079 LINC00242Q5T6M2 205 aa7.67□□□□□ -1.18
CAPN1-223ENST00000533079 GEMIN7Q9H840 131 aaKnown RBP7.67□□□□□ -1.18
CAPN1-223ENST00000533079 PSORS1C2Q9UIG4 136 aa7.67□□□□□ -1.18
CAPN1-223ENST00000533079 IGHV1-58A0A0C4DH39 117 aa7.66□□□□□ -1.18
CAPN1-223ENST00000533079 GAGE12HA6NDE8 117 aa7.66□□□□□ -1.18
CAPN1-223ENST00000533079 J3QQQ9 107 aa7.66□□□□□ -1.18
CAPN1-223ENST00000533079 HSD52Q0P140 79 aa7.66□□□□□ -1.18
CAPN1-223ENST00000533079 HIGD2BQ4VC39 106 aa7.66□□□□□ -1.18
CAPN1-223ENST00000533079 KRTAP9-6A0A140TA67 174 aa7.65□□□□□ -1.18
CAPN1-223ENST00000533079 RNASE13Q5GAN3 156 aaKnown RBP7.65□□□□□ -1.18
CAPN1-223ENST00000533079 BVES-AS1Q5T3Y7 98 aa7.65□□□□□ -1.18
CAPN1-223ENST00000533079 IGLV5-39A0A0G2JS06 123 aa7.64□□□□□ -1.19
CAPN1-223ENST00000533079 COL5A1-AS1Q5SY13 56 aa7.64□□□□□ -1.19
CAPN1-223ENST00000533079 LINC00469Q8N7U9 141 aa7.64□□□□□ -1.19
CAPN1-223ENST00000533079 CDKN2A-AS1Q9UH64 79 aa7.64□□□□□ -1.19
CAPN1-223ENST00000533079 ZNF815PA8K554 130 aa7.63□□□□□ -1.19
CAPN1-223ENST00000533079 LGALS3P17931 250 aaKnown RBP7.63□□□□□ -1.19
CAPN1-223ENST00000533079 LINC01561Q8N1V8 128 aa7.63□□□□□ -1.19
CAPN1-223ENST00000533079 TTTY13Q9BZ97 58 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms