RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 KRTAP9-8Q9BYQ0 159 aa4.64□□□□□ -1.67
CD44-232ENST00000531118 TMEM191AQ9H0A3 160 aa4.64□□□□□ -1.67
CD44-232ENST00000531118 TRAV13-1A0A0B4J241 112 aa4.63□□□□□ -1.67
CD44-232ENST00000531118 A0A1B0GW15 77 aa4.63□□□□□ -1.67
CD44-232ENST00000531118 C7orf77A4D0Y5 90 aa4.63□□□□□ -1.67
CD44-232ENST00000531118 I3L3M4 83 aa4.63□□□□□ -1.67
CD44-232ENST00000531118 BCE1O60756 84 aa4.63□□□□□ -1.67
CD44-232ENST00000531118 S100A8P05109 93 aa4.63□□□□□ -1.67
CD44-232ENST00000531118 PMCHP20382 165 aa4.63□□□□□ -1.67
CD44-232ENST00000531118 UNQ6190/PRO20217Q6UXQ8 127 aa4.63□□□□□ -1.67
CD44-232ENST00000531118 ST20Q9HBF5 79 aa4.63□□□□□ -1.67
CD44-232ENST00000531118 V9GYV3 84 aa4.63□□□□□ -1.67
CD44-232ENST00000531118 IGLV5-39A0A0G2JS06 123 aa4.62□□□□□ -1.67
CD44-232ENST00000531118 TRBV6-5A0A0K0K1A5 114 aa4.62□□□□□ -1.67
CD44-232ENST00000531118 F8W036 122 aa4.62□□□□□ -1.67
CD44-232ENST00000531118 PPP1R2P9O14990 202 aa4.62□□□□□ -1.67
CD44-232ENST00000531118 SMAGPQ0VAQ4 97 aa4.62□□□□□ -1.67
CD44-232ENST00000531118 Q6ZUT4 128 aa4.62□□□□□ -1.67
CD44-232ENST00000531118 IGKV2D-26A0A0A0MRZ7 120 aa4.61□□□□□ -1.67
CD44-232ENST00000531118 SMIM27A0A1W2PRY6 76 aa4.61□□□□□ -1.67
CD44-232ENST00000531118 C9JQL5 133 aa4.61□□□□□ -1.67
CD44-232ENST00000531118 NDUFC2-KCTD14E9PQ53 114 aa4.61□□□□□ -1.67
CD44-232ENST00000531118 RAB4AP20338 218 aa4.61□□□□□ -1.67
CD44-232ENST00000531118 PNRC1Q12796 327 aaPredicted RBP4.61□□□□□ -1.67
CD44-232ENST00000531118 Q8N9P0 234 aaPredicted RBP4.61□□□□□ -1.67
CD44-232ENST00000531118 KIR2DL4Q99706 377 aa4.61□□□□□ -1.67
CD44-232ENST00000531118 LINC00862A6NCI5 91 aa4.6□□□□□ -1.67
CD44-232ENST00000531118 VCYO14598 125 aa4.6□□□□□ -1.67
CD44-232ENST00000531118 TCAPO15273 167 aa4.6□□□□□ -1.67
CD44-232ENST00000531118 MT-ND4LP03901 98 aa4.6□□□□□ -1.67
CD44-232ENST00000531118 FCER1GP30273 86 aa4.6□□□□□ -1.67
CD44-232ENST00000531118 HBBP68871 147 aa4.6□□□□□ -1.67
CD44-232ENST00000531118 AMN1Q8IY45 258 aa4.6□□□□□ -1.67
CD44-232ENST00000531118 UBE2D4Q9Y2X8 147 aa4.6□□□□□ -1.67
CD44-232ENST00000531118 C22orf24Q9Y442 160 aa4.6□□□□□ -1.67
CD44-232ENST00000531118 TRBV30A0A0K0K1B3 111 aa4.59□□□□□ -1.67
CD44-232ENST00000531118 TRBV27A0A0K0K1C4 114 aa4.59□□□□□ -1.67
CD44-232ENST00000531118 CKS2P33552 79 aa4.59□□□□□ -1.67
CD44-232ENST00000531118 LBHQ53QV2 105 aaPredicted RBP4.59□□□□□ -1.67
CD44-232ENST00000531118 FAM104BQ5XKR9 115 aa4.59□□□□□ -1.67
CD44-232ENST00000531118 KRTAP13-1Q8IUC0 172 aa4.59□□□□□ -1.67
CD44-232ENST00000531118 TMEM18Q96B42 140 aa4.59□□□□□ -1.67
CD44-232ENST00000531118 MACF1Q9UPN3 7388 aaKnown RBP4.59□□□□□ -1.67
CD44-232ENST00000531118 PPBPP02775 128 aa4.58□□□□□ -1.68
CD44-232ENST00000531118 POLR2KP53803 58 aaKnown RBP4.58□□□□□ -1.68
CD44-232ENST00000531118 CLLU1Q5K131 121 aa4.58□□□□□ -1.68
CD44-232ENST00000531118 UQCC3Q6UW78 93 aa4.58□□□□□ -1.68
CD44-232ENST00000531118 ATP5L2Q7Z4Y8 100 aa4.58□□□□□ -1.68
CD44-232ENST00000531118 C3orf22Q8N5N4 141 aa4.58□□□□□ -1.68
CD44-232ENST00000531118 PACRGQ96M98 296 aaPredicted RBP4.58□□□□□ -1.68
CD44-232ENST00000531118 C20orf78Q9BR46 151 aa4.58□□□□□ -1.68
CD44-232ENST00000531118 CSDC2Q9Y534 153 aaKnown RBP4.58□□□□□ -1.68
CD44-232ENST00000531118 IGHV3OR16-9A0A0B4J2B5 98 aa4.57□□□□□ -1.68
CD44-232ENST00000531118 M0R2T5 61 aa4.57□□□□□ -1.68
CD44-232ENST00000531118 KIAA0087Q14695 138 aa4.57□□□□□ -1.68
CD44-232ENST00000531118 MRPL54Q6P161 138 aaKnown RBP4.57□□□□□ -1.68
CD44-232ENST00000531118 C2orf82Q6UX34 121 aa4.57□□□□□ -1.68
CD44-232ENST00000531118 MRPL55Q7Z7F7 128 aaKnown RBP4.57□□□□□ -1.68
CD44-232ENST00000531118 TP73-AS1Q9UF72 201 aa4.57□□□□□ -1.68
CD44-232ENST00000531118 TRBV24-1A0A075B6N3 115 aa4.56□□□□□ -1.68
CD44-232ENST00000531118 SMKR1H3BMG3 65 aa4.56□□□□□ -1.68
CD44-232ENST00000531118 RAB5AP20339 215 aa4.56□□□□□ -1.68
CD44-232ENST00000531118 UBE2AP49459 152 aa4.56□□□□□ -1.68
CD44-232ENST00000531118 MRPL51Q4U2R6 128 aaKnown RBP4.56□□□□□ -1.68
CD44-232ENST00000531118 SPAG11AQ6PDA7 123 aa4.56□□□□□ -1.68
CD44-232ENST00000531118 ORMDL3Q8N138 153 aa4.56□□□□□ -1.68
CD44-232ENST00000531118 LINC00469Q8N7U9 141 aa4.56□□□□□ -1.68
CD44-232ENST00000531118 A0A1B0GXF2 115 aa4.55□□□□□ -1.68
CD44-232ENST00000531118 D6R8Y8 96 aa4.55□□□□□ -1.68
CD44-232ENST00000531118 RPL32P62910 135 aaKnown RBP4.55□□□□□ -1.68
CD44-232ENST00000531118 XAGE1AQ9HD64 81 aa4.55□□□□□ -1.68
CD44-232ENST00000531118 LAMTOR2Q9Y2Q5 125 aa4.55□□□□□ -1.68
CD44-232ENST00000531118 S100PP25815 95 aa4.54□□□□□ -1.68
CD44-232ENST00000531118 TMEM136Q6ZRR5 245 aa4.54□□□□□ -1.68
CD44-232ENST00000531118 DAND5Q8N907 189 aa4.54□□□□□ -1.68
CD44-232ENST00000531118 PRELID3AQ96N28 172 aa4.54□□□□□ -1.68
CD44-232ENST00000531118 TIMM21Q9BVV7 248 aa4.54□□□□□ -1.68
CD44-232ENST00000531118 SMIM2Q9BVW6 85 aa4.54□□□□□ -1.68
CD44-232ENST00000531118 TGIF2-C20orf24A0A0A6YYL0 155 aa4.53□□□□□ -1.68
CD44-232ENST00000531118 TMEM218A2RU14 115 aa4.53□□□□□ -1.68
CD44-232ENST00000531118 RPL37AP8A6NKH3 93 aa4.53□□□□□ -1.68
CD44-232ENST00000531118 IFITM10A6NMD0 228 aa4.53□□□□□ -1.68
CD44-232ENST00000531118 LINC00167Q96N53 147 aa4.53□□□□□ -1.68
CD44-232ENST00000531118 SEC11CQ9BY50 192 aa4.53□□□□□ -1.68
CD44-232ENST00000531118 TRAV9-1A0A075B6T8 112 aa4.52□□□□□ -1.69
CD44-232ENST00000531118 GAGE10A6NGK3 116 aa4.52□□□□□ -1.69
CD44-232ENST00000531118 K7EMI3 77 aa4.52□□□□□ -1.69
CD44-232ENST00000531118 NPYP01303 97 aa4.52□□□□□ -1.69
CD44-232ENST00000531118 G0S2P27469 103 aa4.52□□□□□ -1.69
CD44-232ENST00000531118 PRLHP81277 87 aa4.52□□□□□ -1.69
CD44-232ENST00000531118 IFITM2Q01629 132 aa4.52□□□□□ -1.69
CD44-232ENST00000531118 FAM104AQ969W3 186 aa4.52□□□□□ -1.69
CD44-232ENST00000531118 MAP1LC3AQ9H492 121 aa4.52□□□□□ -1.69
CD44-232ENST00000531118 SPANXA1Q9NS26 97 aa4.52□□□□□ -1.69
CD44-232ENST00000531118 IGLV8-61A0A075B6I0 122 aa4.51□□□□□ -1.69
CD44-232ENST00000531118 PRSS47A8MTI9 375 aa4.51□□□□□ -1.69
CD44-232ENST00000531118 IFI27P40305 119 aaPredicted RBP4.51□□□□□ -1.69
CD44-232ENST00000531118 COX19Q49B96 90 aa4.51□□□□□ -1.69
CD44-232ENST00000531118 COMMD7Q86VX2 200 aa4.51□□□□□ -1.69
CD44-232ENST00000531118 NDUFA12Q9UI09 145 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms