RNA–Protein interactions for RNA: ENST00000526971.1

PKP3-204, Transcript of plakophilin 3, humanhuman

TSL 2

Gene PKP3, Length 532 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-204ENST00000526971 TINCRA0A1B0GVN0 87 aa12□□□□□ -0.49
PKP3-204ENST00000526971 PMCHL1Q16048 86 aa11.99□□□□□ -0.49
PKP3-204ENST00000526971 C6orf48Q9UBA6 75 aa11.99□□□□□ -0.49
PKP3-204ENST00000526971 LRP2P98164 4655 aa11.99□□□□□ -0.49
PKP3-204ENST00000526971 RPL18AQ02543 176 aaKnown RBP11.98□□□□□ -0.49
PKP3-204ENST00000526971 PDZD11Q5EBL8 140 aa11.98□□□□□ -0.49
PKP3-204ENST00000526971 LINC00469Q8N7U9 141 aa11.98□□□□□ -0.49
PKP3-204ENST00000526971 PACRGQ96M98 296 aaPredicted RBP11.98□□□□□ -0.49
PKP3-204ENST00000526971 IGLV5-45A0A087WSX0 123 aa11.97□□□□□ -0.49
PKP3-204ENST00000526971 PRSS2P07478 247 aa11.97□□□□□ -0.49
PKP3-204ENST00000526971 C2orf82Q6UX34 121 aa11.97□□□□□ -0.49
PKP3-204ENST00000526971 CHCHD1Q96BP2 118 aaKnown RBP11.97□□□□□ -0.49
PKP3-204ENST00000526971 TRGC2P03986 189 aa11.96□□□□□ -0.49
PKP3-204ENST00000526971 Q8IZM0 81 aa11.96□□□□□ -0.49
PKP3-204ENST00000526971 C7orf33Q8WU49 177 aa11.96□□□□□ -0.49
PKP3-204ENST00000526971 TOMM7Q9P0U1 55 aa11.96□□□□□ -0.49
PKP3-204ENST00000526971 TRBV30A0A0K0K1B3 111 aa11.95□□□□□ -0.5
PKP3-204ENST00000526971 ATP5LO75964 103 aa11.95□□□□□ -0.5
PKP3-204ENST00000526971 TLX1NBP0CAT3 122 aa11.95□□□□□ -0.5
PKP3-204ENST00000526971 C6orf226Q5I0X4 101 aa11.95□□□□□ -0.5
PKP3-204ENST00000526971 COLCA2A8K830 154 aa11.94□□□□□ -0.5
PKP3-204ENST00000526971 NDUFA6P56556 154 aa11.94□□□□□ -0.5
PKP3-204ENST00000526971 CKS1BP61024 79 aa11.94□□□□□ -0.5
PKP3-204ENST00000526971 SMIM1B2RUZ4 78 aa11.93□□□□□ -0.5
PKP3-204ENST00000526971 Q6ZRP5 223 aa11.93□□□□□ -0.5
PKP3-204ENST00000526971 A0A1W2PNN7 141 aa11.92□□□□□ -0.5
PKP3-204ENST00000526971 IGLC3P0DOY3 106 aa11.92□□□□□ -0.5
PKP3-204ENST00000526971 BAGE3Q86Y29 109 aa11.92□□□□□ -0.5
PKP3-204ENST00000526971 C9orf116Q5BN46 136 aaPredicted RBP11.91□□□□□ -0.5
PKP3-204ENST00000526971 NDUFC2-KCTD14E9PQ53 114 aa11.89□□□□□ -0.51
PKP3-204ENST00000526971 H3BRM9 83 aa11.89□□□□□ -0.51
PKP3-204ENST00000526971 SPINK8P0C7L1 97 aa11.89□□□□□ -0.51
PKP3-204ENST00000526971 GAGE2EQ4V326 116 aa11.89□□□□□ -0.51
PKP3-204ENST00000526971 COX7B2Q8TF08 81 aa11.89□□□□□ -0.51
PKP3-204ENST00000526971 GAGE2DQ9UEU5 116 aa11.89□□□□□ -0.51
PKP3-204ENST00000526971 RNF213Q63HN8 5207 aa11.89□□□□□ -0.51
PKP3-204ENST00000526971 F8VRH5 84 aa11.88□□□□□ -0.51
PKP3-204ENST00000526971 HSBP1O75506 76 aa11.88□□□□□ -0.51
PKP3-204ENST00000526971 CXCL5P42830 114 aa11.88□□□□□ -0.51
PKP3-204ENST00000526971 SCO1O75880 301 aa11.86□□□□□ -0.51
PKP3-204ENST00000526971 ZNF22P17026 224 aaPredicted RBP11.86□□□□□ -0.51
PKP3-204ENST00000526971 FAM19A2Q8N3H0 131 aa11.86□□□□□ -0.51
PKP3-204ENST00000526971 IFI27L1Q96BM0 104 aa11.86□□□□□ -0.51
PKP3-204ENST00000526971 PRR3P79522 188 aaKnown RBP11.85□□□□□ -0.51
PKP3-204ENST00000526971 IGLV5-39A0A0G2JS06 123 aa11.84□□□□□ -0.51
PKP3-204ENST00000526971 FAM168BA1KXE4 195 aa11.84□□□□□ -0.51
PKP3-204ENST00000526971 C11orf86A6NJI1 115 aa11.84□□□□□ -0.51
PKP3-204ENST00000526971 SERF1AO75920 110 aa11.84□□□□□ -0.51
PKP3-204ENST00000526971 LINC00310P59036 64 aa11.84□□□□□ -0.51
PKP3-204ENST00000526971 CHTOPQ9Y3Y2 248 aaKnown RBP11.84□□□□□ -0.51
PKP3-204ENST00000526971 TRAV12-1A0A0B4J245 112 aa11.83□□□□□ -0.52
PKP3-204ENST00000526971 ODF1Q14990 250 aa11.83□□□□□ -0.52
PKP3-204ENST00000526971 C9orf129Q5T035 196 aaKnown RBP11.82□□□□□ -0.52
PKP3-204ENST00000526971 PHF5AQ7RTV0 110 aaKnown RBP11.82□□□□□ -0.52
PKP3-204ENST00000526971 FAM19A5Q7Z5A7 132 aaPredicted RBP11.81□□□□□ -0.52
PKP3-204ENST00000526971 KRTAP7-1Q8IUC3 87 aa11.81□□□□□ -0.52
PKP3-204ENST00000526971 TMEM170BQ5T4T1 132 aa11.8□□□□□ -0.52
PKP3-204ENST00000526971 NUPR1O60356 82 aa11.79□□□□□ -0.52
PKP3-204ENST00000526971 LEPROTL1O95214 131 aa11.78□□□□□ -0.52
PKP3-204ENST00000526971 XAGE1AQ9HD64 81 aa11.78□□□□□ -0.52
PKP3-204ENST00000526971 PSORS1C2Q9UIG4 136 aa11.76□□□□□ -0.53
PKP3-204ENST00000526971 M0QXV9 152 aa11.75□□□□□ -0.53
PKP3-204ENST00000526971 HSPB8Q9UJY1 196 aa11.75□□□□□ -0.53
PKP3-204ENST00000526971 TMEM223A0PJW6 202 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST1H2BKO60814 126 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST1H2BJP06899 126 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST1H2BOP23527 126 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST1H2BBP33778 126 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST1H2BDP58876 126 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST1H2BCP62807 126 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST2H2BEQ16778 126 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST1H2BHQ93079 126 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST1H2BNQ99877 126 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 HIST1H2BMQ99879 126 aa11.74□□□□□ -0.53
PKP3-204ENST00000526971 H0Y8G0 127 aa11.73□□□□□ -0.53
PKP3-204ENST00000526971 FABP4P15090 132 aa11.73□□□□□ -0.53
PKP3-204ENST00000526971 SRSF9Q13242 221 aaKnown RBP eCLIP11.73□□□□□ -0.53
PKP3-204ENST00000526971 KRTAP11-1Q8IUC1 163 aa11.73□□□□□ -0.53
PKP3-204ENST00000526971 LINC01600Q96MT4 127 aa11.73□□□□□ -0.53
PKP3-204ENST00000526971 SFTA2Q6UW10 78 aa11.72□□□□□ -0.53
PKP3-204ENST00000526971 SPINK6Q6UWN8 80 aa11.72□□□□□ -0.53
PKP3-204ENST00000526971 C1orf137Q5JT78 98 aa11.71□□□□□ -0.53
PKP3-204ENST00000526971 C22orf24Q9Y442 160 aa11.71□□□□□ -0.53
PKP3-204ENST00000526971 PFN2P35080 140 aa11.7□□□□□ -0.54
PKP3-204ENST00000526971 UBE2BP63146 152 aa11.7□□□□□ -0.54
PKP3-204ENST00000526971 ZNF625Q96I27 306 aaPredicted RBP11.7□□□□□ -0.54
PKP3-204ENST00000526971 ERG28Q9UKR5 140 aa11.7□□□□□ -0.54
PKP3-204ENST00000526971 COX17Q14061 63 aa11.68□□□□□ -0.54
PKP3-204ENST00000526971 LBHQ53QV2 105 aaPredicted RBP11.68□□□□□ -0.54
PKP3-204ENST00000526971 PLNP26678 52 aa11.67□□□□□ -0.54
PKP3-204ENST00000526971 TP73-AS1Q9UF72 201 aa11.67□□□□□ -0.54
PKP3-204ENST00000526971 MAP1LC3CQ9BXW4 147 aa11.66□□□□□ -0.54
PKP3-204ENST00000526971 DPM2O94777 84 aa11.65□□□□□ -0.54
PKP3-204ENST00000526971 IGLV7-43P04211 117 aa11.65□□□□□ -0.54
PKP3-204ENST00000526971 KRTAP10-8P60410 259 aa11.64□□□□□ -0.55
PKP3-204ENST00000526971 MRPL55Q7Z7F7 128 aaKnown RBP11.64□□□□□ -0.55
PKP3-204ENST00000526971 PMCHL2Q9BQD1 86 aa11.64□□□□□ -0.55
PKP3-204ENST00000526971 SND1-IT1Q9HBX3 110 aa11.64□□□□□ -0.55
PKP3-204ENST00000526971 IGLV5-37A0A075B6J1 123 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms