RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 C9orf163Q8N9P6 203 aa6.54□□□□□ -1.36
VPS28-204ENST00000526054 ORAOV1Q8WV07 137 aa6.54□□□□□ -1.36
VPS28-204ENST00000526054 IGHV3-64A0A075B6Q5 118 aa6.53□□□□□ -1.36
VPS28-204ENST00000526054 A0A0J9YXV3 536 aa6.53□□□□□ -1.36
VPS28-204ENST00000526054 COX6A2Q02221 97 aa6.53□□□□□ -1.36
VPS28-204ENST00000526054 LINC01545Q5VT33 79 aa6.53□□□□□ -1.36
VPS28-204ENST00000526054 LINC01561Q8N1V8 128 aa6.53□□□□□ -1.36
VPS28-204ENST00000526054 CIRBP-AS1Q8TBR5 109 aa6.53□□□□□ -1.36
VPS28-204ENST00000526054 CST9LQ9H4G1 147 aa6.53□□□□□ -1.36
VPS28-204ENST00000526054 IGLV4-69A0A075B6H9 119 aa6.52□□□□□ -1.37
VPS28-204ENST00000526054 TINCRA0A1B0GVN0 87 aa6.52□□□□□ -1.37
VPS28-204ENST00000526054 SLPIP03973 132 aa6.52□□□□□ -1.37
VPS28-204ENST00000526054 ODF1Q14990 250 aa6.52□□□□□ -1.37
VPS28-204ENST00000526054 PYY3Q5JQD4 70 aa6.52□□□□□ -1.37
VPS28-204ENST00000526054 LINC00526Q96FQ7 95 aa6.52□□□□□ -1.37
VPS28-204ENST00000526054 C2orf48Q96LS8 159 aa6.52□□□□□ -1.37
VPS28-204ENST00000526054 CARD19Q96LW7 228 aa6.52□□□□□ -1.37
VPS28-204ENST00000526054 PKIGQ9Y2B9 76 aa6.52□□□□□ -1.37
VPS28-204ENST00000526054 CHTOPQ9Y3Y2 248 aaKnown RBP6.52□□□□□ -1.37
VPS28-204ENST00000526054 HMCN2Q8NDA2 5059 aa6.52□□□□□ -1.37
VPS28-204ENST00000526054 F8VRH5 84 aa6.51□□□□□ -1.37
VPS28-204ENST00000526054 F8WDY8 70 aa6.51□□□□□ -1.37
VPS28-204ENST00000526054 PLNP26678 52 aa6.51□□□□□ -1.37
VPS28-204ENST00000526054 KRTAP10-4P60372 401 aaPredicted RBP6.51□□□□□ -1.37
VPS28-204ENST00000526054 SYCNQ0VAF6 134 aa6.51□□□□□ -1.37
VPS28-204ENST00000526054 LINC00469Q8N7U9 141 aa6.51□□□□□ -1.37
VPS28-204ENST00000526054 CAMK2N2Q96S95 79 aa6.51□□□□□ -1.37
VPS28-204ENST00000526054 PMCHL2Q9BQD1 86 aa6.51□□□□□ -1.37
VPS28-204ENST00000526054 IGLV5-45A0A087WSX0 123 aa6.5□□□□□ -1.37
VPS28-204ENST00000526054 DPM2O94777 84 aa6.5□□□□□ -1.37
VPS28-204ENST00000526054 IGLC3P0DOY3 106 aa6.5□□□□□ -1.37
VPS28-204ENST00000526054 SERTAD4-AS1Q5TG53 156 aa6.5□□□□□ -1.37
VPS28-204ENST00000526054 MRPL35Q9NZE8 188 aaKnown RBP6.5□□□□□ -1.37
VPS28-204ENST00000526054 CDKN2A-AS1Q9UH64 79 aa6.5□□□□□ -1.37
VPS28-204ENST00000526054 H3BRM9 83 aa6.49□□□□□ -1.37
VPS28-204ENST00000526054 NDUFA1O15239 70 aa6.49□□□□□ -1.37
VPS28-204ENST00000526054 OXTP01178 125 aa6.49□□□□□ -1.37
VPS28-204ENST00000526054 IGKCP01834 107 aa6.49□□□□□ -1.37
VPS28-204ENST00000526054 PRSS2P07478 247 aa6.49□□□□□ -1.37
VPS28-204ENST00000526054 Q6ZRU5 148 aa6.49□□□□□ -1.37
VPS28-204ENST00000526054 UBR4Q5T4S7 5183 aa6.49□□□□□ -1.37
VPS28-204ENST00000526054 RPL37AP61513 92 aaKnown RBP6.48□□□□□ -1.37
VPS28-204ENST00000526054 S100A12P80511 92 aa6.48□□□□□ -1.37
VPS28-204ENST00000526054 SDIM1Q6ZPB5 146 aa6.48□□□□□ -1.37
VPS28-204ENST00000526054 ATOH7Q8N100 152 aa6.48□□□□□ -1.37
VPS28-204ENST00000526054 TOMM7Q9P0U1 55 aa6.48□□□□□ -1.37
VPS28-204ENST00000526054 SMIM1B2RUZ4 78 aa6.47□□□□□ -1.37
VPS28-204ENST00000526054 HSBP1L1C9JCN9 74 aa6.47□□□□□ -1.37
VPS28-204ENST00000526054 KIAA0087Q14695 138 aa6.47□□□□□ -1.37
VPS28-204ENST00000526054 Q8IZM0 81 aa6.47□□□□□ -1.37
VPS28-204ENST00000526054 C12orf57Q99622 126 aa6.47□□□□□ -1.37
VPS28-204ENST00000526054 VAMP8Q9BV40 100 aa6.47□□□□□ -1.37
VPS28-204ENST00000526054 LOC107984640A0A0U1RRK4 108 aa6.46□□□□□ -1.38
VPS28-204ENST00000526054 C11orf86A6NJI1 115 aa6.46□□□□□ -1.38
VPS28-204ENST00000526054 SPINK8P0C7L1 97 aa6.46□□□□□ -1.38
VPS28-204ENST00000526054 ZNF22P17026 224 aaPredicted RBP6.46□□□□□ -1.38
VPS28-204ENST00000526054 CXCL5P42830 114 aa6.46□□□□□ -1.38
VPS28-204ENST00000526054 CKS1BP61024 79 aa6.46□□□□□ -1.38
VPS28-204ENST00000526054 RNF151Q2KHN1 245 aa6.46□□□□□ -1.38
VPS28-204ENST00000526054 C6orf226Q5I0X4 101 aa6.46□□□□□ -1.38
VPS28-204ENST00000526054 LINC00518Q8N0U6 118 aa6.46□□□□□ -1.38
VPS28-204ENST00000526054 IGKV2-24A0A0C4DH68 120 aa6.45□□□□□ -1.38
VPS28-204ENST00000526054 TRBV30A0A0K0K1B3 111 aa6.45□□□□□ -1.38
VPS28-204ENST00000526054 TMEM170BQ5T4T1 132 aa6.45□□□□□ -1.38
VPS28-204ENST00000526054 UNQ6190/PRO20217Q6UXQ8 127 aa6.45□□□□□ -1.38
VPS28-204ENST00000526054 COX7B2Q8TF08 81 aa6.45□□□□□ -1.38
VPS28-204ENST00000526054 LINC00474Q9P2X8 69 aa6.45□□□□□ -1.38
VPS28-204ENST00000526054 PLA2G2DQ9UNK4 145 aa6.45□□□□□ -1.38
VPS28-204ENST00000526054 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.45□□□□□ -1.38
VPS28-204ENST00000526054 A0A096LNI7 61 aa6.44□□□□□ -1.38
VPS28-204ENST00000526054 CHTF8P0CG12 524 aa6.44□□□□□ -1.38
VPS28-204ENST00000526054 HERVK_113P61574 105 aa6.44□□□□□ -1.38
VPS28-204ENST00000526054 CIRBPQ14011 172 aaKnown RBP6.44□□□□□ -1.38
VPS28-204ENST00000526054 C10orf25Q5T742 122 aa6.44□□□□□ -1.38
VPS28-204ENST00000526054 C2orf82Q6UX34 121 aa6.44□□□□□ -1.38
VPS28-204ENST00000526054 SPACA4Q8TDM5 124 aa6.44□□□□□ -1.38
VPS28-204ENST00000526054 DPH3Q96FX2 82 aa6.44□□□□□ -1.38
VPS28-204ENST00000526054 C6orf48Q9UBA6 75 aa6.44□□□□□ -1.38
VPS28-204ENST00000526054 PAM16Q9Y3D7 125 aa6.44□□□□□ -1.38
VPS28-204ENST00000526054 HNRNPA3P51991 378 aaKnown RBP6.43□□□□□ -1.38
VPS28-204ENST00000526054 RPL18AQ02543 176 aaKnown RBP6.43□□□□□ -1.38
VPS28-204ENST00000526054 GAGE2BQ13066 116 aa6.43□□□□□ -1.38
VPS28-204ENST00000526054 MAJINQ3KP22 176 aa6.43□□□□□ -1.38
VPS28-204ENST00000526054 SPATA45Q537H7 98 aa6.43□□□□□ -1.38
VPS28-204ENST00000526054 IGLV5-39A0A0G2JS06 123 aa6.42□□□□□ -1.38
VPS28-204ENST00000526054 PANO1I0J062 215 aa6.42□□□□□ -1.38
VPS28-204ENST00000526054 TLX1NBP0CAT3 122 aa6.42□□□□□ -1.38
VPS28-204ENST00000526054 PTTG1IPP53801 180 aa6.42□□□□□ -1.38
VPS28-204ENST00000526054 STPG4Q8N801 248 aa6.42□□□□□ -1.38
VPS28-204ENST00000526054 A0A087WYN8 130 aa6.41□□□□□ -1.38
VPS28-204ENST00000526054 TMEM223A0PJW6 202 aa6.41□□□□□ -1.38
VPS28-204ENST00000526054 E9PLD3 99 aa6.4□□□□□ -1.38
VPS28-204ENST00000526054 NDUFC2-KCTD14E9PQ53 114 aa6.4□□□□□ -1.38
VPS28-204ENST00000526054 ANKRD39Q53RE8 183 aa6.4□□□□□ -1.38
VPS28-204ENST00000526054 SFTA2Q6UW10 78 aa6.4□□□□□ -1.38
VPS28-204ENST00000526054 PLAC8Q9NZF1 115 aa6.4□□□□□ -1.38
VPS28-204ENST00000526054 TSTD3H0UI37 97 aa6.39□□□□□ -1.39
VPS28-204ENST00000526054 NMUP48645 174 aa6.39□□□□□ -1.39
VPS28-204ENST00000526054 GAGE2EQ4V326 116 aa6.39□□□□□ -1.39
VPS28-204ENST00000526054 PLEKHB2Q96CS7 222 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms