RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 FAM19A2Q8N3H0 131 aa2.82□□□□□ -1.96
CD44-220ENST00000525688 LINC00167Q96N53 147 aa2.82□□□□□ -1.96
CD44-220ENST00000525688 C14orf132Q9NPU4 83 aa2.82□□□□□ -1.96
CD44-220ENST00000525688 TRAV40A0A0B4J280 105 aa2.81□□□□□ -1.96
CD44-220ENST00000525688 M0R1W7 72 aa2.81□□□□□ -1.96
CD44-220ENST00000525688 PIN1P1O15428 100 aa2.81□□□□□ -1.96
CD44-220ENST00000525688 CYB5AP00167 134 aa2.81□□□□□ -1.96
CD44-220ENST00000525688 SLC25A6P12236 298 aa2.81□□□□□ -1.96
CD44-220ENST00000525688 KRTAP12-2P59991 146 aa2.81□□□□□ -1.96
CD44-220ENST00000525688 EIF4EBP1Q13541 118 aaPredicted RBP2.81□□□□□ -1.96
CD44-220ENST00000525688 Q5BKY6 102 aa2.81□□□□□ -1.96
CD44-220ENST00000525688 LINC00269Q8N2A0 174 aa2.81□□□□□ -1.96
CD44-220ENST00000525688 SMIM7Q9BQ49 75 aa2.81□□□□□ -1.96
CD44-220ENST00000525688 UQCR10Q9UDW1 63 aa2.81□□□□□ -1.96
CD44-220ENST00000525688 NBEAL1Q6ZS30 2694 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 IGLC7A0M8Q6 106 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 SFT2D2O95562 160 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 IL4P05112 153 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 CCL3L1P16619 93 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 DEFB112Q30KQ8 113 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 HCP5Q6MZN7 132 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 BRD3OSQ6XYD6 125 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 LINC00299Q6ZSB3 139 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 VMO1Q7Z5L0 202 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 C15orf53Q8NAA6 179 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 C20orf166-AS1Q96NR2 134 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 PMCHL2Q9BQD1 86 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 MINOS1-NBL1R4GNA1 71 aa2.8□□□□□ -1.96
CD44-220ENST00000525688 TRRAPQ9Y4A5 3859 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 LOC107984156A0A0G2JMH3 177 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 TRBV7-7A0A0K0K1E9 115 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 IBA57-AS1B1ANH7 110 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 APOC3P02656 99 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 MGST1P10620 155 aaKnown RBP2.79□□□□□ -1.96
CD44-220ENST00000525688 EDDM3BP56851 147 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 PRB3Q04118 309 aaPredicted RBP2.79□□□□□ -1.96
CD44-220ENST00000525688 MPV17LQ2QL34 196 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 PIGYQ3MUY2 71 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 SPANXN1Q5VSR9 72 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 ARL17AQ8IVW1 177 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 SMCO4Q9NRQ5 59 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 NDUFB11Q9NX14 153 aa2.79□□□□□ -1.96
CD44-220ENST00000525688 MEGF8Q7Z7M0 2845 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 IGHV3-64A0A075B6Q5 118 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 A0A087WSZ3 146 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 TMEM14DPA8MWL7 114 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 ODF3BA8MYP8 253 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 ADCYAP1P18509 176 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 CBLN1P23435 193 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 SPANXN5Q5MJ07 72 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 HEPN1Q6WQI6 88 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 DYNLRB2Q8TF09 96 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 MGAM2Q2M2H8 2515 aa2.78□□□□□ -1.96
CD44-220ENST00000525688 KIAA2026Q5HYC2 2103 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 IGLV10-54A0A075B6I4 117 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 IGHV3OR16-8A0A075B7F1 116 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 TRAV1-2A0A0B4J238 106 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 hADV29S1A0JD25 119 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 TMEM30CPA0ZSE6 113 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 E7EUB6 86 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 PDCD5O14737 125 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 IGKCP01834 107 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 BAALC-AS2P0C853 105 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 ZNF345Q14585 488 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 MINOS1Q5TGZ0 78 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 S100A16Q96FQ6 103 aaKnown RBP2.77□□□□□ -1.97
CD44-220ENST00000525688 C20orf78Q9BR46 151 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 NDUFA12Q9UI09 145 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 S4R3C0 116 aa2.77□□□□□ -1.97
CD44-220ENST00000525688 IGKV2D-24A0A075B6R9 120 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 TRAV2A0A0B4J234 112 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 PIGBOS1A0A0B4J2F0 54 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 H3BUX3 64 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 ATOX1O00244 68 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 NUPR1O60356 82 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 CCKP06307 115 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 RBM3P98179 157 aaKnown RBP2.76□□□□□ -1.97
CD44-220ENST00000525688 DEFA5Q01523 94 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 RHOHQ15669 191 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 Q1T7F1 81 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 KRTAP25-1Q3LHN0 102 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 CASC2Q6XLA1 102 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 TMEM136Q6ZRR5 245 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 MYOZ3Q8TDC0 251 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 TMEM141Q96I45 108 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 RABAC1Q9UI14 185 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 CMYA5Q8N3K9 4069 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 MUC4Q99102 2169 aa2.76□□□□□ -1.97
CD44-220ENST00000525688 A0A087WXM4 84 aa2.75□□□□□ -1.97
CD44-220ENST00000525688 CLPSL1A2RUU4 121 aa2.75□□□□□ -1.97
CD44-220ENST00000525688 MIFP14174 115 aa2.75□□□□□ -1.97
CD44-220ENST00000525688 ZNF137PP52743 207 aa2.75□□□□□ -1.97
CD44-220ENST00000525688 HMGN3Q15651 99 aa2.75□□□□□ -1.97
CD44-220ENST00000525688 LINC00483Q53H64 154 aa2.75□□□□□ -1.97
CD44-220ENST00000525688 S100A7L2Q5SY68 101 aa2.75□□□□□ -1.97
CD44-220ENST00000525688 KPRPQ5T749 579 aaPredicted RBP2.75□□□□□ -1.97
CD44-220ENST00000525688 C6orf201Q7Z4U5 140 aa2.75□□□□□ -1.97
CD44-220ENST00000525688 LEAP2Q969E1 77 aa2.75□□□□□ -1.97
CD44-220ENST00000525688 MRPL35Q9NZE8 188 aaKnown RBP2.75□□□□□ -1.97
CD44-220ENST00000525688 HILPDAQ9Y5L2 63 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 148.4 ms