RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 TRBV7-1A0A0A6YYK4 115 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 SPAARA0A1B0GVQ0 90 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 G3V318 75 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 NDUFB6O95139 128 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 IL5P05113 134 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 CBLN1P23435 193 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 EDDM3BP56851 147 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 BTG2P78543 158 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 ZNF818PQ6ZRF7 136 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 SMIM11BQ8TCY0 68 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 WFDC6Q9BQY6 131 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 SNRNP25Q9BV90 132 aaKnown RBP0.12□□□□□ -2.39
CD44-215ENST00000525241 CCDC167Q9P0B6 97 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 TARBP1Q13395 1621 aaKnown RBP0.12□□□□□ -2.39
CD44-215ENST00000525241 TRGV1A0A0A0MS02 117 aa0.11□□□□□ -2.39
CD44-215ENST00000525241 LOC100130705A0A1B0GUX0 176 aa0.11□□□□□ -2.39
CD44-215ENST00000525241 FAM92AA1XBS5 289 aa0.11□□□□□ -2.39
CD44-215ENST00000525241 SELENOWP63302 87 aa0.11□□□□□ -2.39
CD44-215ENST00000525241 CCL8P80075 99 aa0.11□□□□□ -2.39
CD44-215ENST00000525241 Q5VV11 94 aa0.11□□□□□ -2.39
CD44-215ENST00000525241 Q8N8P6 123 aa0.11□□□□□ -2.39
CD44-215ENST00000525241 SPTSSAQ969W0 71 aa0.11□□□□□ -2.39
CD44-215ENST00000525241 PSMG3Q9BT73 122 aaPredicted RBP0.11□□□□□ -2.39
CD44-215ENST00000525241 RPRMQ9NS64 109 aa0.11□□□□□ -2.39
CD44-215ENST00000525241 V9GYV3 84 aa0.11□□□□□ -2.39
CD44-215ENST00000525241 SMG6Q86US8 1419 aaKnown RBP0.11□□□□□ -2.39
CD44-215ENST00000525241 MLH3Q9UHC1 1453 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 ANKRD26Q9UPS8 1709 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 PIPP12273 146 aaPredicted RBP0.1□□□□□ -2.39
CD44-215ENST00000525241 CCDC58Q4VC31 144 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 Q6AWC8 147 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 KCNRGQ8N5I3 272 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 PRR15LQ9BU68 103 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 AGPAT4-IT1Q9H0P7 198 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 ARHGEF5Q12774 1597 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 A2ML1A8K2U0 1454 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 ADGRL2O95490 1459 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 C1orf167Q5SNV9 1468 aa0.1□□□□□ -2.39
CD44-215ENST00000525241 SBF2Q86WG5 1849 aa0.09□□□□□ -2.39
CD44-215ENST00000525241 TRBV10-3A0A0K0K1G6 114 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 F2Z2F3 143 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 GNG7O60262 68 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 SIX6O95475 246 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 HIST1H1DP16402 221 aaKnown RBP0.09□□□□□ -2.4
CD44-215ENST00000525241 INSL4Q14641 139 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 KRTAP20-2Q3LI61 65 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 FAM74A4Q5TZK3 123 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 MYO7BQ6PIF6 2116 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 Q6ZRX8 168 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 ARL11Q969Q4 196 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 SEC11CQ9BY50 192 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 RERGLQ9H628 205 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 PKD1L3Q7Z443 1732 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 SCN11AQ9UI33 1791 aa0.09□□□□□ -2.4
CD44-215ENST00000525241 MAST1Q9Y2H9 1570 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 TMEM14DPA8MWL7 114 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 APOC4-APOC2K7ER74 178 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 IFNA17P01571 189 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 APODP05090 189 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 CCL18P55774 89 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 S100A7L2Q5SY68 101 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 SPINK6Q6UWN8 80 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 SPTSSBQ8NFR3 76 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 FAM107BQ9H098 131 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 LINC00312Q9Y6C7 94 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 SERP1Q9Y6X1 66 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 MRC1P22897 1456 aa0.08□□□□□ -2.4
CD44-215ENST00000525241 A0A0G2JMZ2 1700 aa0.07□□□□□ -2.4
CD44-215ENST00000525241 FMN2Q9NZ56 1722 aa0.07□□□□□ -2.4
CD44-215ENST00000525241 HCG22E2RYF7 251 aa0.07□□□□□ -2.4
CD44-215ENST00000525241 NMBP08949 121 aa0.07□□□□□ -2.4
CD44-215ENST00000525241 ACYP2P14621 99 aa0.07□□□□□ -2.4
CD44-215ENST00000525241 C1orf54Q8WWF1 131 aa0.07□□□□□ -2.4
CD44-215ENST00000525241 PDCD10Q9BUL8 212 aa0.07□□□□□ -2.4
CD44-215ENST00000525241 USF3Q68DE3 2245 aa0.07□□□□□ -2.4
CD44-215ENST00000525241 DNAH8Q96JB1 4490 aa0.07□□□□□ -2.4
CD44-215ENST00000525241 ERVK-7P63135 1459 aa0.06□□□□□ -2.4
CD44-215ENST00000525241 TRAV1-2A0A0B4J238 106 aa0.06□□□□□ -2.4
CD44-215ENST00000525241 MEIG1Q5JSS6 88 aa0.06□□□□□ -2.4
CD44-215ENST00000525241 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.06□□□□□ -2.4
CD44-215ENST00000525241 SPRR2FQ96RM1 72 aa0.06□□□□□ -2.4
CD44-215ENST00000525241 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.06□□□□□ -2.4
CD44-215ENST00000525241 GLI2P10070 1586 aa0.06□□□□□ -2.4
CD44-215ENST00000525241 BTAF1O14981 1849 aa0.06□□□□□ -2.4
CD44-215ENST00000525241 C3P01024 1663 aa0.05□□□□□ -2.4
CD44-215ENST00000525241 NKTRP30414 1462 aaKnown RBP0.05□□□□□ -2.4
CD44-215ENST00000525241 SNCGO76070 127 aa0.05□□□□□ -2.4
CD44-215ENST00000525241 FGF7P21781 194 aa0.05□□□□□ -2.4
CD44-215ENST00000525241 C12orf73Q69YU5 71 aa0.05□□□□□ -2.4
CD44-215ENST00000525241 ROCK2O75116 1388 aaKnown RBP0.05□□□□□ -2.4
CD44-215ENST00000525241 PLCH1Q4KWH8 1693 aa0.05□□□□□ -2.4
CD44-215ENST00000525241 CPSF1Q10570 1443 aaKnown RBP0.04□□□□□ -2.4
CD44-215ENST00000525241 RAPGEF2Q9Y4G8 1499 aa0.04□□□□□ -2.4
CD44-215ENST00000525241 EIF4G3O43432 1585 aaKnown RBP0.04□□□□□ -2.4
CD44-215ENST00000525241 GOLGA4Q13439 2230 aaKnown RBP0.04□□□□□ -2.4
CD44-215ENST00000525241 TRAV13-2A0A0B4J235 113 aa0.04□□□□□ -2.4
CD44-215ENST00000525241 EFCAB10A6NFE3 127 aa0.04□□□□□ -2.4
CD44-215ENST00000525241 RBM3P98179 157 aaKnown RBP0.04□□□□□ -2.4
CD44-215ENST00000525241 RPL7L1Q6DKI1 246 aaKnown RBP0.04□□□□□ -2.4
CD44-215ENST00000525241 AMELXQ99217 191 aa0.04□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms