RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 SS18Q15532 418 aa7.68□□□□□ -1.18
HDAC9-228ENST00000524023 PRO0255Q9UI72 69 aa7.68□□□□□ -1.18
HDAC9-228ENST00000524023 SMIM9A6NGZ8 99 aa7.67□□□□□ -1.18
HDAC9-228ENST00000524023 MALP21145 153 aa7.67□□□□□ -1.18
HDAC9-228ENST00000524023 C11orf68Q9H3H3 251 aaKnown RBP7.67□□□□□ -1.18
HDAC9-228ENST00000524023 A0A087WYN8 130 aa7.67□□□□□ -1.18
HDAC9-228ENST00000524023 SMR3AQ99954 134 aa7.67□□□□□ -1.18
HDAC9-228ENST00000524023 A0A096LPF7 62 aa7.66□□□□□ -1.18
HDAC9-228ENST00000524023 H0YGX0 51 aa7.66□□□□□ -1.18
HDAC9-228ENST00000524023 PAX4O43316 350 aa7.66□□□□□ -1.18
HDAC9-228ENST00000524023 Q8IZM0 81 aa7.66□□□□□ -1.18
HDAC9-228ENST00000524023 INAFM2P0DMQ5 153 aa7.66□□□□□ -1.18
HDAC9-228ENST00000524023 CLPSL2Q6UWE3 100 aa7.66□□□□□ -1.18
HDAC9-228ENST00000524023 SMCR5Q8TEV8 140 aa7.66□□□□□ -1.18
HDAC9-228ENST00000524023 DNAL4O96015 105 aa7.65□□□□□ -1.18
HDAC9-228ENST00000524023 LINC01561Q8N1V8 128 aa7.65□□□□□ -1.18
HDAC9-228ENST00000524023 FASNP49327 2511 aaKnown RBP7.65□□□□□ -1.18
HDAC9-228ENST00000524023 SDIM1Q6ZPB5 146 aa7.64□□□□□ -1.19
HDAC9-228ENST00000524023 LYRM9A8MSI8 78 aa7.64□□□□□ -1.19
HDAC9-228ENST00000524023 CCDC179H3BU77 68 aa7.64□□□□□ -1.19
HDAC9-228ENST00000524023 LINC00643Q86TS7 51 aa7.64□□□□□ -1.19
HDAC9-228ENST00000524023 OR13C6PQ8NH95 151 aa7.64□□□□□ -1.19
HDAC9-228ENST00000524023 B5MCH6 92 aa7.63□□□□□ -1.19
HDAC9-228ENST00000524023 LY6G6DO95868 133 aa7.63□□□□□ -1.19
HDAC9-228ENST00000524023 ATP5G1P05496 136 aa7.63□□□□□ -1.19
HDAC9-228ENST00000524023 SPATA3Q8NHX4 192 aa7.63□□□□□ -1.19
HDAC9-228ENST00000524023 J3QKU1 62 aa7.63□□□□□ -1.19
HDAC9-228ENST00000524023 IMUPQ9GZP8 106 aa7.63□□□□□ -1.19
HDAC9-228ENST00000524023 LECT2O14960 151 aa7.62□□□□□ -1.19
HDAC9-228ENST00000524023 GAGE2AQ6NT46 116 aa7.62□□□□□ -1.19
HDAC9-228ENST00000524023 LINC00269Q8N2A0 174 aa7.62□□□□□ -1.19
HDAC9-228ENST00000524023 DEFB4AO15263 64 aa7.61□□□□□ -1.19
HDAC9-228ENST00000524023 KIAA0087Q14695 138 aa7.61□□□□□ -1.19
HDAC9-228ENST00000524023 DEFB135Q30KP9 77 aa7.61□□□□□ -1.19
HDAC9-228ENST00000524023 C9orf129Q5T035 196 aaKnown RBP7.61□□□□□ -1.19
HDAC9-228ENST00000524023 C9orf66Q5T8R8 295 aa7.61□□□□□ -1.19
HDAC9-228ENST00000524023 CD164L2Q6UWJ8 174 aa7.61□□□□□ -1.19
HDAC9-228ENST00000524023 TENM1Q9UKZ4 2725 aa7.61□□□□□ -1.19
HDAC9-228ENST00000524023 CHCHD10Q8WYQ3 142 aaPredicted RBP7.6□□□□□ -1.19
HDAC9-228ENST00000524023 Q8N3U1 123 aa7.6□□□□□ -1.19
HDAC9-228ENST00000524023 OBSCN-AS1Q96MR7 158 aa7.6□□□□□ -1.19
HDAC9-228ENST00000524023 ANGP03950 147 aaKnown RBP7.59□□□□□ -1.19
HDAC9-228ENST00000524023 CFAP161Q6P656 301 aa7.59□□□□□ -1.19
HDAC9-228ENST00000524023 SS18L2Q9UHA2 77 aa7.59□□□□□ -1.19
HDAC9-228ENST00000524023 KMT2BQ9UMN6 2715 aaPredicted RBP7.59□□□□□ -1.19
HDAC9-228ENST00000524023 IGLV10-54A0A075B6I4 117 aa7.59□□□□□ -1.2
HDAC9-228ENST00000524023 IGHV4-28A0A0C4DH34 117 aa7.59□□□□□ -1.2
HDAC9-228ENST00000524023 FAM236AA0A1B0GUQ0 79 aa7.59□□□□□ -1.2
HDAC9-228ENST00000524023 FAM236BA0A1B0GV22 79 aa7.59□□□□□ -1.2
HDAC9-228ENST00000524023 SLPIP03973 132 aa7.59□□□□□ -1.2
HDAC9-228ENST00000524023 CXCL5P42830 114 aa7.59□□□□□ -1.2
HDAC9-228ENST00000524023 DAD1P61803 113 aa7.59□□□□□ -1.2
HDAC9-228ENST00000524023 REG3AQ06141 175 aa7.59□□□□□ -1.2
HDAC9-228ENST00000524023 COX17Q14061 63 aa7.59□□□□□ -1.2
HDAC9-228ENST00000524023 C14orf132Q9NPU4 83 aa7.59□□□□□ -1.2
HDAC9-228ENST00000524023 NANOS2P60321 138 aaKnown RBP7.58□□□□□ -1.2
HDAC9-228ENST00000524023 PRR3P79522 188 aaKnown RBP7.58□□□□□ -1.2
HDAC9-228ENST00000524023 NDUFC2O95298 119 aa7.57□□□□□ -1.2
HDAC9-228ENST00000524023 APOC4P55056 127 aa7.57□□□□□ -1.2
HDAC9-228ENST00000524023 OTOGQ6ZRI0 2925 aa7.57□□□□□ -1.2
HDAC9-228ENST00000524023 ORMDL1Q9P0S3 153 aa7.57□□□□□ -1.2
HDAC9-228ENST00000524023 CELA1Q9UNI1 258 aa7.57□□□□□ -1.2
HDAC9-228ENST00000524023 KLK5Q9Y337 293 aaPredicted RBP7.57□□□□□ -1.2
HDAC9-228ENST00000524023 NSD1Q96L73 2696 aaPredicted RBP7.57□□□□□ -1.2
HDAC9-228ENST00000524023 NCR3O14931 201 aa7.56□□□□□ -1.2
HDAC9-228ENST00000524023 C9orf116Q5BN46 136 aaPredicted RBP7.56□□□□□ -1.2
HDAC9-228ENST00000524023 NOTCH2Q04721 2471 aa7.56□□□□□ -1.2
HDAC9-228ENST00000524023 Q8NAQ8 132 aa7.56□□□□□ -1.2
HDAC9-228ENST00000524023 LINC00167Q96N53 147 aa7.56□□□□□ -1.2
HDAC9-228ENST00000524023 TRRAPQ9Y4A5 3859 aa7.55□□□□□ -1.2
HDAC9-228ENST00000524023 A0A1B0GX51 115 aa7.55□□□□□ -1.2
HDAC9-228ENST00000524023 TMEM126AQ9H061 195 aa7.55□□□□□ -1.2
HDAC9-228ENST00000524023 HECTD1Q9ULT8 2610 aa7.55□□□□□ -1.2
HDAC9-228ENST00000524023 MIFP14174 115 aa7.54□□□□□ -1.2
HDAC9-228ENST00000524023 Q8N814 137 aa7.54□□□□□ -1.2
HDAC9-228ENST00000524023 INAFM1C9JVW0 142 aa7.53□□□□□ -1.2
HDAC9-228ENST00000524023 Q8NDZ9 215 aa7.53□□□□□ -1.2
HDAC9-228ENST00000524023 LELP1Q5T871 98 aa7.53□□□□□ -1.2
HDAC9-228ENST00000524023 LINC00846Q9NV44 126 aa7.53□□□□□ -1.2
HDAC9-228ENST00000524023 ATRQ13535 2644 aa7.53□□□□□ -1.2
HDAC9-228ENST00000524023 TEP1Q99973 2627 aaKnown RBP7.52□□□□□ -1.21
HDAC9-228ENST00000524023 SPART-AS1P0CW21 52 aa7.52□□□□□ -1.21
HDAC9-228ENST00000524023 HTN3P15516 51 aa7.52□□□□□ -1.21
HDAC9-228ENST00000524023 C6orf223Q8N319 242 aa7.52□□□□□ -1.21
HDAC9-228ENST00000524023 HIVEP1P15822 2718 aa7.52□□□□□ -1.21
HDAC9-228ENST00000524023 C10orf25Q5T742 122 aa7.52□□□□□ -1.21
HDAC9-228ENST00000524023 UNQ6190/PRO20217Q6UXQ8 127 aa7.52□□□□□ -1.21
HDAC9-228ENST00000524023 SPAG11BQ08648 103 aa7.51□□□□□ -1.21
HDAC9-228ENST00000524023 C6orf99Q4VX62 202 aa7.5□□□□□ -1.21
HDAC9-228ENST00000524023 JMJD7-PLA2G4BH0Y9G9 81 aa7.5□□□□□ -1.21
HDAC9-228ENST00000524023 TMEM256-PLSCR3K7ERE1 68 aa7.5□□□□□ -1.21
HDAC9-228ENST00000524023 CCKP06307 115 aa7.5□□□□□ -1.21
HDAC9-228ENST00000524023 Q6JHZ5 121 aa7.5□□□□□ -1.21
HDAC9-228ENST00000524023 LINC00526Q96FQ7 95 aa7.5□□□□□ -1.21
HDAC9-228ENST00000524023 PRR34Q9NV39 138 aa7.5□□□□□ -1.21
HDAC9-228ENST00000524023 A0A0J9YWU9 116 aa7.49□□□□□ -1.21
HDAC9-228ENST00000524023 CYSRT1A8MQ03 144 aa7.49□□□□□ -1.21
HDAC9-228ENST00000524023 IGHV4-30-4P0DP06 118 aa7.49□□□□□ -1.21
HDAC9-228ENST00000524023 HIST1H4AP62805 103 aaKnown RBP7.49□□□□□ -1.21
HDAC9-228ENST00000524023 S100A7L2Q5SY68 101 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms