RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	SPAG11A	Q6PDA7	123 aa		5.89	□□□□□ -1.47
CLDND1-231	ENST00000515620	C20orf78	Q9BR46	151 aa		5.89	□□□□□ -1.47
CLDND1-231	ENST00000515620	KRTAP10-6	P60371	365 aa	Predicted RBP	5.88	□□□□□ -1.47
CLDND1-231	ENST00000515620	MRPL51	Q4U2R6	128 aa	Known RBP	5.88	□□□□□ -1.47
CLDND1-231	ENST00000515620	LINC01561	Q8N1V8	128 aa		5.88	□□□□□ -1.47
CLDND1-231	ENST00000515620	SMIM2	Q9BVW6	85 aa		5.88	□□□□□ -1.47
CLDND1-231	ENST00000515620	IGLV4-3	A0A075B6K6	122 aa		5.87	□□□□□ -1.47
CLDND1-231	ENST00000515620	IGKV2-28	A0A075B6P5	120 aa		5.87	□□□□□ -1.47
CLDND1-231	ENST00000515620	IGKV2D-28	P01615	120 aa		5.87	□□□□□ -1.47
CLDND1-231	ENST00000515620	IFI27	P40305	119 aa	Predicted RBP	5.87	□□□□□ -1.47
CLDND1-231	ENST00000515620	RIG	Q13278	110 aa		5.87	□□□□□ -1.47
CLDND1-231	ENST00000515620		Q6ZN92	141 aa		5.87	□□□□□ -1.47
CLDND1-231	ENST00000515620		Q8IZM0	81 aa		5.87	□□□□□ -1.47
CLDND1-231	ENST00000515620	NKAPP1	Q8N9T2	125 aa		5.87	□□□□□ -1.47
CLDND1-231	ENST00000515620	ALKBH7	Q9BT30	221 aa	Predicted RBP	5.87	□□□□□ -1.47
CLDND1-231	ENST00000515620	TRBV24-1	A0A075B6N3	115 aa		5.86	□□□□□ -1.47
CLDND1-231	ENST00000515620	HMSD	A8MTL9	139 aa		5.86	□□□□□ -1.47
CLDND1-231	ENST00000515620		F8VRH5	84 aa		5.86	□□□□□ -1.47
CLDND1-231	ENST00000515620	TNFRSF6B	O95407	300 aa		5.86	□□□□□ -1.47
CLDND1-231	ENST00000515620	TAGLN2	P37802	199 aa	Known RBP	5.86	□□□□□ -1.47
CLDND1-231	ENST00000515620	FAM104B	Q5XKR9	115 aa		5.86	□□□□□ -1.47
CLDND1-231	ENST00000515620	KRTAP19-1	Q8IUB9	90 aa		5.86	□□□□□ -1.47
CLDND1-231	ENST00000515620	TMEM141	Q96I45	108 aa		5.86	□□□□□ -1.47
CLDND1-231	ENST00000515620		A0A1B0GVG6	124 aa		5.85	□□□□□ -1.47
CLDND1-231	ENST00000515620	SCO1	O75880	301 aa		5.85	□□□□□ -1.47
CLDND1-231	ENST00000515620	CKS2	P33552	79 aa		5.85	□□□□□ -1.47
CLDND1-231	ENST00000515620	CEBPG	P53567	150 aa		5.85	□□□□□ -1.47
CLDND1-231	ENST00000515620	TEX43	Q6ZNM6	134 aa		5.85	□□□□□ -1.47
CLDND1-231	ENST00000515620	FAM19A1	Q7Z5A9	133 aa		5.85	□□□□□ -1.47
CLDND1-231	ENST00000515620	IGLV5-37	A0A075B6J1	123 aa		5.84	□□□□□ -1.47
CLDND1-231	ENST00000515620	LINC00862	A6NCI5	91 aa		5.84	□□□□□ -1.47
CLDND1-231	ENST00000515620	ZC2HC1B	Q5TFG8	222 aa		5.84	□□□□□ -1.47
CLDND1-231	ENST00000515620	DAND5	Q8N907	189 aa		5.84	□□□□□ -1.47
CLDND1-231	ENST00000515620	PLEKHB2	Q96CS7	222 aa		5.84	□□□□□ -1.47
CLDND1-231	ENST00000515620	C2orf88	Q9BSF0	95 aa		5.84	□□□□□ -1.47
CLDND1-231	ENST00000515620	EIF5A2	Q9GZV4	153 aa	Known RBP	5.84	□□□□□ -1.47
CLDND1-231	ENST00000515620	PYGO1	Q9Y3Y4	419 aa		5.84	□□□□□ -1.47
CLDND1-231	ENST00000515620	TMEM238	C9JI98	176 aa		5.83	□□□□□ -1.48
CLDND1-231	ENST00000515620		D6R8Y8	96 aa		5.83	□□□□□ -1.48
CLDND1-231	ENST00000515620	TMEM250	H0YL14	139 aa		5.83	□□□□□ -1.48
CLDND1-231	ENST00000515620	NPY	P01303	97 aa		5.83	□□□□□ -1.48
CLDND1-231	ENST00000515620	LCE3B	Q5TA77	95 aa		5.83	□□□□□ -1.48
CLDND1-231	ENST00000515620		Q8NBF4	154 aa		5.83	□□□□□ -1.48
CLDND1-231	ENST00000515620	LINC01551	Q86U37	167 aa		5.82	□□□□□ -1.48
CLDND1-231	ENST00000515620	TMEM126A	Q9H061	195 aa		5.82	□□□□□ -1.48
CLDND1-231	ENST00000515620	OSTC	Q9NRP0	149 aa		5.82	□□□□□ -1.48
CLDND1-231	ENST00000515620	NDUFA12	Q9UI09	145 aa		5.82	□□□□□ -1.48
CLDND1-231	ENST00000515620		M0R2T5	61 aa		5.81	□□□□□ -1.48
CLDND1-231	ENST00000515620	RAB5A	P20339	215 aa		5.81	□□□□□ -1.48
CLDND1-231	ENST00000515620	CXCL5	P42830	114 aa		5.81	□□□□□ -1.48
CLDND1-231	ENST00000515620	KRTAP19-4	Q3LI73	84 aa		5.81	□□□□□ -1.48
CLDND1-231	ENST00000515620	CBLN2	Q8IUK8	224 aa		5.81	□□□□□ -1.48
CLDND1-231	ENST00000515620	SMIM7	Q9BQ49	75 aa		5.81	□□□□□ -1.48
CLDND1-231	ENST00000515620	HIGD2A	Q9BW72	106 aa		5.81	□□□□□ -1.48
CLDND1-231	ENST00000515620		V9GYV3	84 aa		5.81	□□□□□ -1.48
CLDND1-231	ENST00000515620	SPRR4	Q96PI1	79 aa		5.8	□□□□□ -1.48
CLDND1-231	ENST00000515620	CDKN2A-AS1	Q9UH64	79 aa		5.8	□□□□□ -1.48
CLDND1-231	ENST00000515620	NAT8B	Q9UHF3	227 aa		5.8	□□□□□ -1.48
CLDND1-231	ENST00000515620		M0R378	163 aa		5.79	□□□□□ -1.48
CLDND1-231	ENST00000515620	SPINK1	P00995	79 aa		5.79	□□□□□ -1.48
CLDND1-231	ENST00000515620	RAB5B	P61020	215 aa		5.79	□□□□□ -1.48
CLDND1-231	ENST00000515620	GNB1L	Q9BYB4	327 aa		5.79	□□□□□ -1.48
CLDND1-231	ENST00000515620	FAM19A2	Q8N3H0	131 aa		5.78	□□□□□ -1.48
CLDND1-231	ENST00000515620	AMELX	Q99217	191 aa		5.78	□□□□□ -1.48
CLDND1-231	ENST00000515620	VCX2	Q9H322	139 aa		5.78	□□□□□ -1.48
CLDND1-231	ENST00000515620	IGLV8-61	A0A075B6I0	122 aa		5.77	□□□□□ -1.49
CLDND1-231	ENST00000515620	HERVK_113	P63121	156 aa		5.77	□□□□□ -1.49
CLDND1-231	ENST00000515620	FAM74A3	Q4VXF1	159 aa		5.77	□□□□□ -1.49
CLDND1-231	ENST00000515620	PCOTH	Q58A44	107 aa		5.77	□□□□□ -1.49
CLDND1-231	ENST00000515620	C2orf66	Q6UXQ4	117 aa		5.77	□□□□□ -1.49
CLDND1-231	ENST00000515620	GEMIN7	Q9H840	131 aa	Known RBP	5.77	□□□□□ -1.49
CLDND1-231	ENST00000515620	BATF3	Q9NR55	127 aa		5.77	□□□□□ -1.49
CLDND1-231	ENST00000515620	CYSLTR1	Q9Y271	337 aa		5.77	□□□□□ -1.49
CLDND1-231	ENST00000515620		A0A1B0GW15	77 aa		5.76	□□□□□ -1.49
CLDND1-231	ENST00000515620		F8W036	122 aa		5.76	□□□□□ -1.49
CLDND1-231	ENST00000515620	FAM19A3	Q7Z5A8	133 aa		5.76	□□□□□ -1.49
CLDND1-231	ENST00000515620		Q8N377	158 aa		5.76	□□□□□ -1.49
CLDND1-231	ENST00000515620	COX7B2	Q8TF08	81 aa		5.76	□□□□□ -1.49
CLDND1-231	ENST00000515620	ZNF706	Q9Y5V0	76 aa	Predicted RBP	5.76	□□□□□ -1.49
CLDND1-231	ENST00000515620	SMIM1	B2RUZ4	78 aa		5.75	□□□□□ -1.49
CLDND1-231	ENST00000515620	PPBP	P02775	128 aa		5.75	□□□□□ -1.49
CLDND1-231	ENST00000515620	VPREB1	P12018	145 aa		5.75	□□□□□ -1.49
CLDND1-231	ENST00000515620	SEC11A	P67812	179 aa		5.75	□□□□□ -1.49
CLDND1-231	ENST00000515620	MRPL54	Q6P161	138 aa	Known RBP	5.75	□□□□□ -1.49
CLDND1-231	ENST00000515620	ORMDL3	Q8N138	153 aa		5.75	□□□□□ -1.49
CLDND1-231	ENST00000515620	LOC389332	A0A1B0GUA5	103 aa		5.74	□□□□□ -1.49
CLDND1-231	ENST00000515620	SMIM27	A0A1W2PRY6	76 aa		5.74	□□□□□ -1.49
CLDND1-231	ENST00000515620	PRELID3A	Q96N28	172 aa		5.74	□□□□□ -1.49
CLDND1-231	ENST00000515620	S100A8	P05109	93 aa		5.73	□□□□□ -1.49
CLDND1-231	ENST00000515620	RGS21	Q2M5E4	152 aa		5.73	□□□□□ -1.49
CLDND1-231	ENST00000515620		A0A1B0GXF2	115 aa		5.72	□□□□□ -1.49
CLDND1-231	ENST00000515620	IGIP	A6NJ69	53 aa		5.72	□□□□□ -1.49
CLDND1-231	ENST00000515620	SLC25A20	O43772	301 aa		5.72	□□□□□ -1.49
CLDND1-231	ENST00000515620	NPS	P0C0P6	89 aa		5.72	□□□□□ -1.49
CLDND1-231	ENST00000515620	PFN2	P35080	140 aa		5.72	□□□□□ -1.49
CLDND1-231	ENST00000515620	RPS29	P62273	56 aa	Known RBP	5.72	□□□□□ -1.49
CLDND1-231	ENST00000515620	PDZD11	Q5EBL8	140 aa		5.72	□□□□□ -1.49
CLDND1-231	ENST00000515620	TMEM136	Q6ZRR5	245 aa		5.72	□□□□□ -1.49
CLDND1-231	ENST00000515620	SLC51B	Q86UW2	128 aa		5.72	□□□□□ -1.49
CLDND1-231	ENST00000515620	LINC00310	P59036	64 aa		5.71	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms