RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CCDC179H3BU77 68 aa9.1□□□□□ -0.95
USP53-209ENST00000514665 BRI3O95415 125 aa9.1□□□□□ -0.95
USP53-209ENST00000514665 OXLD1Q5BKU9 147 aa9.1□□□□□ -0.95
USP53-209ENST00000514665 UNQ6190/PRO20217Q6UXQ8 127 aa9.1□□□□□ -0.95
USP53-209ENST00000514665 MGAQ8IWI9 3026 aa9.1□□□□□ -0.95
USP53-209ENST00000514665 C5orf47Q569G3 176 aa9.1□□□□□ -0.95
USP53-209ENST00000514665 WDFY3Q8IZQ1 3526 aa9.09□□□□□ -0.95
USP53-209ENST00000514665 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.09□□□□□ -0.95
USP53-209ENST00000514665 USP17L23D6RBM5 183 aa9.09□□□□□ -0.95
USP53-209ENST00000514665 C3orf84H3BNL1 204 aa9.09□□□□□ -0.95
USP53-209ENST00000514665 IGLV1-51P01701 117 aa9.09□□□□□ -0.95
USP53-209ENST00000514665 FAM19A5Q7Z5A7 132 aaPredicted RBP9.09□□□□□ -0.95
USP53-209ENST00000514665 AKAP13Q12802 2813 aa9.09□□□□□ -0.95
USP53-209ENST00000514665 CYSRT1A8MQ03 144 aa9.09□□□□□ -0.95
USP53-209ENST00000514665 LELP1Q5T871 98 aa9.09□□□□□ -0.95
USP53-209ENST00000514665 C3orf22Q8N5N4 141 aa9.08□□□□□ -0.96
USP53-209ENST00000514665 H0Y9J4 135 aa9.07□□□□□ -0.96
USP53-209ENST00000514665 Q8IZM0 81 aa9.07□□□□□ -0.96
USP53-209ENST00000514665 LINC00315P59091 139 aa9.07□□□□□ -0.96
USP53-209ENST00000514665 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.07□□□□□ -0.96
USP53-209ENST00000514665 FAM19A1Q7Z5A9 133 aa9.06□□□□□ -0.96
USP53-209ENST00000514665 A0A087WZ39 114 aa9.06□□□□□ -0.96
USP53-209ENST00000514665 IGHV4-30-4P0DP06 118 aa9.06□□□□□ -0.96
USP53-209ENST00000514665 BEAN1Q3B7T3 259 aa9.06□□□□□ -0.96
USP53-209ENST00000514665 KIR2DL5BQ8NHK3 375 aa9.05□□□□□ -0.96
USP53-209ENST00000514665 FHL2Q14192 279 aa9.05□□□□□ -0.96
USP53-209ENST00000514665 Q9UF83 564 aa9.05□□□□□ -0.96
USP53-209ENST00000514665 COL4A2P08572 1712 aa9.05□□□□□ -0.96
USP53-209ENST00000514665 IMUPQ9GZP8 106 aa9.04□□□□□ -0.96
USP53-209ENST00000514665 PCSK5Q92824 1860 aa9.04□□□□□ -0.96
USP53-209ENST00000514665 ATP5EP2Q5VTU8 51 aa9.04□□□□□ -0.96
USP53-209ENST00000514665 FRYQ5TBA9 3013 aa9.03□□□□□ -0.96
USP53-209ENST00000514665 RPL37AP8A6NKH3 93 aa9.03□□□□□ -0.96
USP53-209ENST00000514665 RPL28P46779 137 aaKnown RBP9.03□□□□□ -0.96
USP53-209ENST00000514665 SERP2Q8N6R1 65 aa9.03□□□□□ -0.96
USP53-209ENST00000514665 PKIGQ9Y2B9 76 aa9.03□□□□□ -0.96
USP53-209ENST00000514665 CSDC2Q9Y534 153 aaKnown RBP9.03□□□□□ -0.96
USP53-209ENST00000514665 A0A087WYN8 130 aa9.02□□□□□ -0.96
USP53-209ENST00000514665 ZNF73O43830 326 aaPredicted RBP9.02□□□□□ -0.96
USP53-209ENST00000514665 A0A087WVE0 104 aa9.02□□□□□ -0.97
USP53-209ENST00000514665 RETNQ9HD89 108 aa9.02□□□□□ -0.97
USP53-209ENST00000514665 NANOS2P60321 138 aaKnown RBP9.02□□□□□ -0.97
USP53-209ENST00000514665 M0R378 163 aa9.01□□□□□ -0.97
USP53-209ENST00000514665 FLNAP21333 2647 aaKnown RBP9.01□□□□□ -0.97
USP53-209ENST00000514665 KLK5Q9Y337 293 aaPredicted RBP9.01□□□□□ -0.97
USP53-209ENST00000514665 SNURFQ9Y675 71 aa9.01□□□□□ -0.97
USP53-209ENST00000514665 NTM-AS1Q6ZSK4 140 aa9□□□□□ -0.97
USP53-209ENST00000514665 PPDPFQ9H3Y8 114 aa9□□□□□ -0.97
USP53-209ENST00000514665 SHISA2Q6UWI4 295 aa9□□□□□ -0.97
USP53-209ENST00000514665 FAM236DA0A1B0GTK5 79 aa9□□□□□ -0.97
USP53-209ENST00000514665 FAM240AA0A1B0GVK7 77 aa9□□□□□ -0.97
USP53-209ENST00000514665 FAM236CP0DP71 79 aa9□□□□□ -0.97
USP53-209ENST00000514665 NBEAQ8NFP9 2946 aa8.99□□□□□ -0.97
USP53-209ENST00000514665 COX7CP15954 63 aa8.99□□□□□ -0.97
USP53-209ENST00000514665 COX17Q14061 63 aa8.99□□□□□ -0.97
USP53-209ENST00000514665 TRBV10-3A0A0K0K1G6 114 aa8.99□□□□□ -0.97
USP53-209ENST00000514665 C11orf72Q8NBR9 251 aa8.99□□□□□ -0.97
USP53-209ENST00000514665 B9D2Q9BPU9 175 aa8.99□□□□□ -0.97
USP53-209ENST00000514665 TRAV10A0A0B4J240 114 aa8.99□□□□□ -0.97
USP53-209ENST00000514665 C6orf223Q8N319 242 aa8.98□□□□□ -0.97
USP53-209ENST00000514665 A0A0J9YWU9 116 aa8.98□□□□□ -0.97
USP53-209ENST00000514665 MPLKIPQ8TAP9 179 aa8.98□□□□□ -0.97
USP53-209ENST00000514665 CFAP46Q8IYW2 2715 aa8.98□□□□□ -0.97
USP53-209ENST00000514665 A8MTW9 85 aa8.97□□□□□ -0.97
USP53-209ENST00000514665 LINC00337Q8N6G1 96 aa8.97□□□□□ -0.97
USP53-209ENST00000514665 LINC01546A6NGU7 62 aa8.97□□□□□ -0.97
USP53-209ENST00000514665 Q8N814 137 aa8.97□□□□□ -0.97
USP53-209ENST00000514665 FAM19A4Q96LR4 140 aa8.97□□□□□ -0.97
USP53-209ENST00000514665 C14orf177Q52M58 125 aa8.97□□□□□ -0.97
USP53-209ENST00000514665 WFDC10BQ8IUB3 73 aa8.97□□□□□ -0.97
USP53-209ENST00000514665 SMCPP49901 116 aaPredicted RBP8.96□□□□□ -0.97
USP53-209ENST00000514665 ITPR3Q14573 2671 aa8.96□□□□□ -0.97
USP53-209ENST00000514665 CDIP1Q9H305 208 aa8.96□□□□□ -0.98
USP53-209ENST00000514665 Q6ZTC4 211 aa8.96□□□□□ -0.98
USP53-209ENST00000514665 BRK1Q8WUW1 75 aa8.96□□□□□ -0.98
USP53-209ENST00000514665 Q6Q795 121 aa8.95□□□□□ -0.98
USP53-209ENST00000514665 Q6JHZ5 121 aa8.95□□□□□ -0.98
USP53-209ENST00000514665 Q8N2B8 174 aa8.95□□□□□ -0.98
USP53-209ENST00000514665 CFAP47Q6ZTR5 3102 aa8.95□□□□□ -0.98
USP53-209ENST00000514665 COL27A1Q8IZC6 1860 aaPredicted RBP8.95□□□□□ -0.98
USP53-209ENST00000514665 PRR4Q16378 134 aa8.95□□□□□ -0.98
USP53-209ENST00000514665 WFDC13Q8IUB5 93 aa8.95□□□□□ -0.98
USP53-209ENST00000514665 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.94□□□□□ -0.98
USP53-209ENST00000514665 BOD1L1Q8NFC6 3051 aa8.94□□□□□ -0.98
USP53-209ENST00000514665 IGKV4-1P06312 121 aa8.94□□□□□ -0.98
USP53-209ENST00000514665 LOC400499M0QZD8 3231 aa8.93□□□□□ -0.98
USP53-209ENST00000514665 FAM19A3Q7Z5A8 133 aa8.93□□□□□ -0.98
USP53-209ENST00000514665 ASPMQ8IZT6 3477 aa8.93□□□□□ -0.98
USP53-209ENST00000514665 LRCOL1A6NCL2 159 aa8.93□□□□□ -0.98
USP53-209ENST00000514665 CHKB-CPT1BH3BT56 60 aa8.93□□□□□ -0.98
USP53-209ENST00000514665 M0R2N4 97 aa8.93□□□□□ -0.98
USP53-209ENST00000514665 EGFEM1PQ0D2K5 195 aa8.93□□□□□ -0.98
USP53-209ENST00000514665 CHD6Q8TD26 2715 aa8.92□□□□□ -0.98
USP53-209ENST00000514665 IGLV5-39A0A0G2JS06 123 aa8.92□□□□□ -0.98
USP53-209ENST00000514665 IGHV3OR16-9A0A0B4J2B5 98 aa8.92□□□□□ -0.98
USP53-209ENST00000514665 A0A1B0GUV1 79 aa8.91□□□□□ -0.98
USP53-209ENST00000514665 CELA1Q9UNI1 258 aa8.91□□□□□ -0.98
USP53-209ENST00000514665 NDUFC2O95298 119 aa8.91□□□□□ -0.98
USP53-209ENST00000514665 DHRS4-AS1Q9P1J3 65 aa8.91□□□□□ -0.98
USP53-209ENST00000514665 PRO0461Q9UI25 63 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 188.2 ms