RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 ZNF561-AS1K7EIQ3 104 aa10.7□□□□□ -0.7
NUP54-214ENST00000514307 COL5A1-AS1Q5SY13 56 aa10.7□□□□□ -0.7
NUP54-214ENST00000514307 C3orf84H3BNL1 204 aa10.69□□□□□ -0.7
NUP54-214ENST00000514307 IFITM1P13164 125 aa10.69□□□□□ -0.7
NUP54-214ENST00000514307 KIAA0087Q14695 138 aa10.69□□□□□ -0.7
NUP54-214ENST00000514307 STAB2Q8WWQ8 2551 aa10.69□□□□□ -0.7
NUP54-214ENST00000514307 SPAG11BQ08648 103 aa10.68□□□□□ -0.7
NUP54-214ENST00000514307 SPANXDQ9BXN6 97 aa10.68□□□□□ -0.7
NUP54-214ENST00000514307 SPANXCQ9NY87 97 aa10.68□□□□□ -0.7
NUP54-214ENST00000514307 RPL24P83731 157 aaKnown RBP10.67□□□□□ -0.7
NUP54-214ENST00000514307 COX17Q14061 63 aa10.67□□□□□ -0.7
NUP54-214ENST00000514307 NBDYA0A0U1RRE5 68 aa10.66□□□□□ -0.7
NUP54-214ENST00000514307 LINC00158P58513 81 aa10.66□□□□□ -0.7
NUP54-214ENST00000514307 NTN5Q8WTR8 489 aaPredicted RBP10.66□□□□□ -0.7
NUP54-214ENST00000514307 C2orf48Q96LS8 159 aa10.66□□□□□ -0.7
NUP54-214ENST00000514307 SMIM13P0DJ93 91 aa10.65□□□□□ -0.7
NUP54-214ENST00000514307 MUSTN1Q8IVN3 82 aa10.65□□□□□ -0.7
NUP54-214ENST00000514307 LITAFQ99732 161 aa10.65□□□□□ -0.7
NUP54-214ENST00000514307 PSCAO43653 123 aa10.64□□□□□ -0.71
NUP54-214ENST00000514307 ADAMTSL4-AS1Q5T5F5 129 aa10.64□□□□□ -0.71
NUP54-214ENST00000514307 ERG28Q9UKR5 140 aa10.64□□□□□ -0.71
NUP54-214ENST00000514307 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.63□□□□□ -0.71
NUP54-214ENST00000514307 EREGO14944 169 aa10.63□□□□□ -0.71
NUP54-214ENST00000514307 C2orf82Q6UX34 121 aa10.63□□□□□ -0.71
NUP54-214ENST00000514307 PPDPFQ9H3Y8 114 aa10.63□□□□□ -0.71
NUP54-214ENST00000514307 GVQW2A0A096LPI5 108 aaPredicted RBP10.62□□□□□ -0.71
NUP54-214ENST00000514307 CAMK2N2Q96S95 79 aa10.62□□□□□ -0.71
NUP54-214ENST00000514307 TRBV30A0A0K0K1B3 111 aa10.61□□□□□ -0.71
NUP54-214ENST00000514307 A0A0U1RRA0 63 aa10.61□□□□□ -0.71
NUP54-214ENST00000514307 PFN2P35080 140 aa10.61□□□□□ -0.71
NUP54-214ENST00000514307 FXYD2P54710 66 aa10.61□□□□□ -0.71
NUP54-214ENST00000514307 CASC10Q5T4H9 136 aa10.61□□□□□ -0.71
NUP54-214ENST00000514307 UNQ6190/PRO20217Q6UXQ8 127 aa10.61□□□□□ -0.71
NUP54-214ENST00000514307 HIGD2BQ4VC39 106 aa10.6□□□□□ -0.71
NUP54-214ENST00000514307 C6orf223Q8N319 242 aa10.6□□□□□ -0.71
NUP54-214ENST00000514307 C15orf56Q8N910 161 aa10.6□□□□□ -0.71
NUP54-214ENST00000514307 LINC00308Q8TCZ7 52 aa10.6□□□□□ -0.71
NUP54-214ENST00000514307 USP17L23D6RBM5 183 aa10.59□□□□□ -0.71
NUP54-214ENST00000514307 C14orf177Q52M58 125 aa10.59□□□□□ -0.71
NUP54-214ENST00000514307 MIR7-3HGQ8N6C7 128 aa10.59□□□□□ -0.71
NUP54-214ENST00000514307 NHP2Q9NX24 153 aaKnown RBP10.59□□□□□ -0.71
NUP54-214ENST00000514307 A4D1N5 150 aa10.58□□□□□ -0.72
NUP54-214ENST00000514307 SYCNQ0VAF6 134 aa10.58□□□□□ -0.72
NUP54-214ENST00000514307 RNF151Q2KHN1 245 aa10.57□□□□□ -0.72
NUP54-214ENST00000514307 DAND5Q8N907 189 aa10.57□□□□□ -0.72
NUP54-214ENST00000514307 LINC00526Q96FQ7 95 aa10.57□□□□□ -0.72
NUP54-214ENST00000514307 KRTAP1-5Q9BYS1 174 aa10.57□□□□□ -0.72
NUP54-214ENST00000514307 A0A1B0GWB2 263 aa10.56□□□□□ -0.72
NUP54-214ENST00000514307 LY6G6CO95867 125 aa10.56□□□□□ -0.72
NUP54-214ENST00000514307 C10orf25Q5T742 122 aa10.56□□□□□ -0.72
NUP54-214ENST00000514307 RAB37Q96AX2 223 aa10.56□□□□□ -0.72
NUP54-214ENST00000514307 LOC107984156A0A0G2JMH3 177 aa10.54□□□□□ -0.72
NUP54-214ENST00000514307 CFC1BP0CG36 223 aa10.54□□□□□ -0.72
NUP54-214ENST00000514307 CFC1P0CG37 223 aa10.54□□□□□ -0.72
NUP54-214ENST00000514307 NPC2P61916 151 aa10.54□□□□□ -0.72
NUP54-214ENST00000514307 ARL17AQ8IVW1 177 aa10.54□□□□□ -0.72
NUP54-214ENST00000514307 PRO1854Q9UHT4 67 aa10.54□□□□□ -0.72
NUP54-214ENST00000514307 A0A0B4J2C4 111 aa10.53□□□□□ -0.72
NUP54-214ENST00000514307 M0R2N4 97 aa10.53□□□□□ -0.72
NUP54-214ENST00000514307 Q6ZRU5 148 aa10.53□□□□□ -0.72
NUP54-214ENST00000514307 C6orf48Q9UBA6 75 aa10.53□□□□□ -0.72
NUP54-214ENST00000514307 TAX1BP3O14907 124 aa10.52□□□□□ -0.73
NUP54-214ENST00000514307 C9orf116Q5BN46 136 aaPredicted RBP10.52□□□□□ -0.73
NUP54-214ENST00000514307 SND1-IT1Q9HBX3 110 aa10.52□□□□□ -0.73
NUP54-214ENST00000514307 C9orf118A6NHY6 69 aa10.51□□□□□ -0.73
NUP54-214ENST00000514307 Q6ZR54 194 aa10.51□□□□□ -0.73
NUP54-214ENST00000514307 LINC00476Q8WZB0 136 aa10.51□□□□□ -0.73
NUP54-214ENST00000514307 CARD19Q96LW7 228 aa10.51□□□□□ -0.73
NUP54-214ENST00000514307 DYNC2H1Q8NCM8 4307 aaKnown RBP10.51□□□□□ -0.73
NUP54-214ENST00000514307 TRAV13-2A0A0B4J235 113 aa10.49□□□□□ -0.73
NUP54-214ENST00000514307 NDUFC2-KCTD14E9PQ53 114 aa10.49□□□□□ -0.73
NUP54-214ENST00000514307 LECT2O14960 151 aa10.49□□□□□ -0.73
NUP54-214ENST00000514307 C1orf134Q5TEV5 83 aa10.49□□□□□ -0.73
NUP54-214ENST00000514307 SOSTDC1Q6X4U4 206 aa10.49□□□□□ -0.73
NUP54-214ENST00000514307 K7ERJ3 54 aa10.48□□□□□ -0.73
NUP54-214ENST00000514307 NDUFC2O95298 119 aa10.48□□□□□ -0.73
NUP54-214ENST00000514307 PKIGQ9Y2B9 76 aa10.48□□□□□ -0.73
NUP54-214ENST00000514307 KMT2CQ8NEZ4 4911 aaKnown RBP10.47□□□□□ -0.73
NUP54-214ENST00000514307 TLX1NBP0CAT3 122 aa10.47□□□□□ -0.73
NUP54-214ENST00000514307 EIF4EBP3O60516 100 aaPredicted RBP10.46□□□□□ -0.73
NUP54-214ENST00000514307 CNBPP62633 177 aaKnown RBP10.46□□□□□ -0.73
NUP54-214ENST00000514307 Q6ZRN7 208 aaPredicted RBP10.46□□□□□ -0.73
NUP54-214ENST00000514307 PGPEP1Q9NXJ5 209 aa10.46□□□□□ -0.73
NUP54-214ENST00000514307 H3BUT2 72 aa10.45□□□□□ -0.74
NUP54-214ENST00000514307 LOC107984640A0A0U1RRK4 108 aa10.44□□□□□ -0.74
NUP54-214ENST00000514307 LRCOL1A6NCL2 159 aa10.44□□□□□ -0.74
NUP54-214ENST00000514307 SLPIP03973 132 aa10.44□□□□□ -0.74
NUP54-214ENST00000514307 FABP2P12104 132 aa10.44□□□□□ -0.74
NUP54-214ENST00000514307 A0A1B0GV90 55 aa10.43□□□□□ -0.74
NUP54-214ENST00000514307 PSMB2P49721 201 aa10.43□□□□□ -0.74
NUP54-214ENST00000514307 VAMP3Q15836 100 aa10.43□□□□□ -0.74
NUP54-214ENST00000514307 Q1RN00 199 aa10.43□□□□□ -0.74
NUP54-214ENST00000514307 LYRM7Q5U5X0 104 aa10.43□□□□□ -0.74
NUP54-214ENST00000514307 COX6CP09669 75 aa10.42□□□□□ -0.74
NUP54-214ENST00000514307 DNAH7Q8WXX0 4024 aa10.42□□□□□ -0.74
NUP54-214ENST00000514307 A0A1W2PPM0 123 aa10.41□□□□□ -0.74
NUP54-214ENST00000514307 H7C2G1 150 aa10.41□□□□□ -0.74
NUP54-214ENST00000514307 SCGB1C2P0DMR2 95 aa10.41□□□□□ -0.74
NUP54-214ENST00000514307 WFDC2Q14508 124 aa10.41□□□□□ -0.74
NUP54-214ENST00000514307 GAGE2EQ4V326 116 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms