RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 FAM19A3Q7Z5A8 133 aa6.35□□□□□ -1.39
TOPBP1-209ENST00000513818 IGHV3-64A0A075B6Q5 118 aa6.34□□□□□ -1.39
TOPBP1-209ENST00000513818 TINCRA0A1B0GVN0 87 aa6.34□□□□□ -1.39
TOPBP1-209ENST00000513818 C11orf86A6NJI1 115 aa6.34□□□□□ -1.39
TOPBP1-209ENST00000513818 SPINK8P0C7L1 97 aa6.34□□□□□ -1.39
TOPBP1-209ENST00000513818 IGLC3P0DOY3 106 aa6.34□□□□□ -1.39
TOPBP1-209ENST00000513818 ZNF22P17026 224 aaPredicted RBP6.34□□□□□ -1.39
TOPBP1-209ENST00000513818 HERVK_113P63121 156 aa6.34□□□□□ -1.39
TOPBP1-209ENST00000513818 KRTAP4-8Q9BYQ9 185 aa6.34□□□□□ -1.39
TOPBP1-209ENST00000513818 TOMM7Q9P0U1 55 aa6.34□□□□□ -1.39
TOPBP1-209ENST00000513818 APOMO95445 188 aa6.33□□□□□ -1.4
TOPBP1-209ENST00000513818 CNBPP62633 177 aaKnown RBP6.33□□□□□ -1.4
TOPBP1-209ENST00000513818 Q6ZRU5 148 aa6.33□□□□□ -1.4
TOPBP1-209ENST00000513818 CARD19Q96LW7 228 aa6.33□□□□□ -1.4
TOPBP1-209ENST00000513818 PACRGQ96M98 296 aaPredicted RBP6.33□□□□□ -1.4
TOPBP1-209ENST00000513818 PMCHL2Q9BQD1 86 aa6.33□□□□□ -1.4
TOPBP1-209ENST00000513818 MRPL35Q9NZE8 188 aaKnown RBP6.33□□□□□ -1.4
TOPBP1-209ENST00000513818 IGLV5-45A0A087WSX0 123 aa6.32□□□□□ -1.4
TOPBP1-209ENST00000513818 SMIM1B2RUZ4 78 aa6.32□□□□□ -1.4
TOPBP1-209ENST00000513818 SEC11AP67812 179 aa6.32□□□□□ -1.4
TOPBP1-209ENST00000513818 COA6Q5JTJ3 125 aaKnown RBP6.32□□□□□ -1.4
TOPBP1-209ENST00000513818 C10orf25Q5T742 122 aa6.32□□□□□ -1.4
TOPBP1-209ENST00000513818 C2orf82Q6UX34 121 aa6.32□□□□□ -1.4
TOPBP1-209ENST00000513818 OR10D4PQ8NGN7 298 aa6.32□□□□□ -1.4
TOPBP1-209ENST00000513818 CAMK2N2Q96S95 79 aa6.32□□□□□ -1.4
TOPBP1-209ENST00000513818 HSPB8Q9UJY1 196 aa6.32□□□□□ -1.4
TOPBP1-209ENST00000513818 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 TRAV12-1A0A0B4J245 112 aa6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 C9orf118A6NHY6 69 aa6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 F8VRH5 84 aa6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 PANO1I0J062 215 aa6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 CHTF8P0CG12 524 aa6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 SNRPEP62304 92 aaKnown RBP6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 SYCNQ0VAF6 134 aa6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 KIAA0087Q14695 138 aa6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 TMEM170BQ5T4T1 132 aa6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 C9orf163Q8N9P6 203 aa6.31□□□□□ -1.4
TOPBP1-209ENST00000513818 MAP1LC3CQ9BXW4 147 aa6.3□□□□□ -1.4
TOPBP1-209ENST00000513818 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.3□□□□□ -1.4
TOPBP1-209ENST00000513818 PRSS2P07478 247 aa6.29□□□□□ -1.4
TOPBP1-209ENST00000513818 UNQ6190/PRO20217Q6UXQ8 127 aa6.29□□□□□ -1.4
TOPBP1-209ENST00000513818 LINC01561Q8N1V8 128 aa6.29□□□□□ -1.4
TOPBP1-209ENST00000513818 HIST3H2BBQ8N257 126 aa6.29□□□□□ -1.4
TOPBP1-209ENST00000513818 C2orf48Q96LS8 159 aa6.29□□□□□ -1.4
TOPBP1-209ENST00000513818 C6orf48Q9UBA6 75 aa6.29□□□□□ -1.4
TOPBP1-209ENST00000513818 IGKV2-24A0A0C4DH68 120 aa6.28□□□□□ -1.4
TOPBP1-209ENST00000513818 A0A0U1RRA0 63 aa6.28□□□□□ -1.4
TOPBP1-209ENST00000513818 H3BRM9 83 aa6.28□□□□□ -1.4
TOPBP1-209ENST00000513818 SYS1-DBNDD2H3BUS1 97 aa6.28□□□□□ -1.4
TOPBP1-209ENST00000513818 NDUFA1O15239 70 aa6.28□□□□□ -1.4
TOPBP1-209ENST00000513818 XGP55808 180 aa6.28□□□□□ -1.4
TOPBP1-209ENST00000513818 KRTDAPP60985 99 aa6.28□□□□□ -1.4
TOPBP1-209ENST00000513818 COX7B2Q8TF08 81 aa6.28□□□□□ -1.4
TOPBP1-209ENST00000513818 A0A096LNI7 61 aa6.27□□□□□ -1.41
TOPBP1-209ENST00000513818 S100A6P06703 90 aa6.27□□□□□ -1.41
TOPBP1-209ENST00000513818 C3orf79P0CE67 100 aa6.27□□□□□ -1.41
TOPBP1-209ENST00000513818 RPL18AQ02543 176 aaKnown RBP6.27□□□□□ -1.41
TOPBP1-209ENST00000513818 C9orf116Q5BN46 136 aaPredicted RBP6.27□□□□□ -1.41
TOPBP1-209ENST00000513818 SDIM1Q6ZPB5 146 aa6.27□□□□□ -1.41
TOPBP1-209ENST00000513818 Q6ZSA8 131 aa6.27□□□□□ -1.41
TOPBP1-209ENST00000513818 SCXQ7RTU7 201 aa6.27□□□□□ -1.41
TOPBP1-209ENST00000513818 Q8IZM0 81 aa6.27□□□□□ -1.41
TOPBP1-209ENST00000513818 IGLV5-39A0A0G2JS06 123 aa6.26□□□□□ -1.41
TOPBP1-209ENST00000513818 TMEM223A0PJW6 202 aa6.26□□□□□ -1.41
TOPBP1-209ENST00000513818 DPM2O94777 84 aa6.26□□□□□ -1.41
TOPBP1-209ENST00000513818 CKS1BP61024 79 aa6.26□□□□□ -1.41
TOPBP1-209ENST00000513818 GAGE2BQ13066 116 aa6.26□□□□□ -1.41
TOPBP1-209ENST00000513818 C6orf226Q5I0X4 101 aa6.26□□□□□ -1.41
TOPBP1-209ENST00000513818 KRTAP17-1Q9BYP8 105 aa6.26□□□□□ -1.41
TOPBP1-209ENST00000513818 CDK2AP2O75956 126 aa6.25□□□□□ -1.41
TOPBP1-209ENST00000513818 IGKCP01834 107 aa6.25□□□□□ -1.41
TOPBP1-209ENST00000513818 S100A2P29034 98 aa6.25□□□□□ -1.41
TOPBP1-209ENST00000513818 HIST1H2BLQ99880 126 aa6.25□□□□□ -1.41
TOPBP1-209ENST00000513818 SMR3BP02814 79 aaPredicted RBP6.24□□□□□ -1.41
TOPBP1-209ENST00000513818 PLNP26678 52 aa6.24□□□□□ -1.41
TOPBP1-209ENST00000513818 TSPEAR-AS2P59090 65 aa6.24□□□□□ -1.41
TOPBP1-209ENST00000513818 LINC01545Q5VT33 79 aa6.24□□□□□ -1.41
TOPBP1-209ENST00000513818 CIRBP-AS1Q8TBR5 109 aa6.24□□□□□ -1.41
TOPBP1-209ENST00000513818 SPACA4Q8TDM5 124 aa6.24□□□□□ -1.41
TOPBP1-209ENST00000513818 KRTAP9-2Q9BYQ4 174 aa6.24□□□□□ -1.41
TOPBP1-209ENST00000513818 ABCA13Q86UQ4 5058 aa6.23□□□□□ -1.41
TOPBP1-209ENST00000513818 LOC107984640A0A0U1RRK4 108 aa6.23□□□□□ -1.41
TOPBP1-209ENST00000513818 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.23□□□□□ -1.41
TOPBP1-209ENST00000513818 GAGE2EQ4V326 116 aa6.23□□□□□ -1.41
TOPBP1-209ENST00000513818 Q6ZRP5 223 aa6.23□□□□□ -1.41
TOPBP1-209ENST00000513818 ATOH7Q8N100 152 aa6.23□□□□□ -1.41
TOPBP1-209ENST00000513818 ZNF625Q96I27 306 aaPredicted RBP6.23□□□□□ -1.41
TOPBP1-209ENST00000513818 GAGE2DQ9UEU5 116 aa6.23□□□□□ -1.41
TOPBP1-209ENST00000513818 A0A087WYN8 130 aa6.22□□□□□ -1.41
TOPBP1-209ENST00000513818 TRBV30A0A0K0K1B3 111 aa6.22□□□□□ -1.41
TOPBP1-209ENST00000513818 CXCL5P42830 114 aa6.22□□□□□ -1.41
TOPBP1-209ENST00000513818 UBE2V1Q13404 147 aa6.22□□□□□ -1.41
TOPBP1-209ENST00000513818 GAGE2AQ6NT46 116 aa6.22□□□□□ -1.41
TOPBP1-209ENST00000513818 DPH3Q96FX2 82 aa6.22□□□□□ -1.41
TOPBP1-209ENST00000513818 PKHD1L1Q86WI1 4243 aa6.21□□□□□ -1.41
TOPBP1-209ENST00000513818 VPS13BQ7Z7G8 4022 aa6.21□□□□□ -1.42
TOPBP1-209ENST00000513818 KRTAP9-6A0A140TA67 174 aa6.21□□□□□ -1.42
TOPBP1-209ENST00000513818 HERVK_113P61574 105 aa6.21□□□□□ -1.42
TOPBP1-209ENST00000513818 CIRBPQ14011 172 aaKnown RBP6.21□□□□□ -1.42
TOPBP1-209ENST00000513818 FAM168BA1KXE4 195 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms