RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-231	ENST00000498751	LCE5A	Q5TCM9	118 aa		5.22	□□□□□ -1.57
SYNE1-231	ENST00000498751	KRTAP9-3	Q9BYQ3	159 aa		5.22	□□□□□ -1.57
SYNE1-231	ENST00000498751	FBN1	P35555	2871 aa	Known RBP	5.22	□□□□□ -1.57
SYNE1-231	ENST00000498751		F8W1H4	67 aa		5.21	□□□□□ -1.58
SYNE1-231	ENST00000498751		K7EIL1	84 aa		5.21	□□□□□ -1.58
SYNE1-231	ENST00000498751		M0QXV9	152 aa		5.21	□□□□□ -1.58
SYNE1-231	ENST00000498751	COX17	Q14061	63 aa		5.21	□□□□□ -1.58
SYNE1-231	ENST00000498751	KIAA0087	Q14695	138 aa		5.21	□□□□□ -1.58
SYNE1-231	ENST00000498751	MEIG1	Q5JSS6	88 aa		5.21	□□□□□ -1.58
SYNE1-231	ENST00000498751		Q6ZTC4	211 aa		5.21	□□□□□ -1.58
SYNE1-231	ENST00000498751	C15orf53	Q8NAA6	179 aa		5.21	□□□□□ -1.58
SYNE1-231	ENST00000498751	LINC00308	Q8TCZ7	52 aa		5.21	□□□□□ -1.58
SYNE1-231	ENST00000498751	TMEM262	E9PQX1	116 aa		5.2	□□□□□ -1.58
SYNE1-231	ENST00000498751	FOXI1	Q12951	378 aa		5.2	□□□□□ -1.58
SYNE1-231	ENST00000498751	C11orf45	Q8TAV5	145 aa		5.2	□□□□□ -1.58
SYNE1-231	ENST00000498751	KLK5	Q9Y337	293 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE1-231	ENST00000498751	TRRAP	Q9Y4A5	3859 aa		5.2	□□□□□ -1.58
SYNE1-231	ENST00000498751	TRAV10	A0A0B4J240	114 aa		5.19	□□□□□ -1.58
SYNE1-231	ENST00000498751		A0A0J9YWU9	116 aa		5.19	□□□□□ -1.58
SYNE1-231	ENST00000498751	APOM	O95445	188 aa		5.19	□□□□□ -1.58
SYNE1-231	ENST00000498751	LINC01556	Q5JQF7	62 aa		5.19	□□□□□ -1.58
SYNE1-231	ENST00000498751	LINC00269	Q8N2A0	174 aa		5.19	□□□□□ -1.58
SYNE1-231	ENST00000498751	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE1-231	ENST00000498751	RETN	Q9HD89	108 aa		5.19	□□□□□ -1.58
SYNE1-231	ENST00000498751	PRO0461	Q9UI25	63 aa		5.19	□□□□□ -1.58
SYNE1-231	ENST00000498751	ERG28	Q9UKR5	140 aa		5.19	□□□□□ -1.58
SYNE1-231	ENST00000498751	DEFB131B	A0A096LNP1	70 aa		5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751	GVQW2	A0A096LPI5	108 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751		F8WDY8	70 aa		5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751	COX7A2L	O14548	114 aa		5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751	ANG	P03950	147 aa	Known RBP	5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751	PRSS2	P07478	247 aa		5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751	DNAH10OS	P0CZ25	163 aa		5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751	KRTAP26-1	Q6PEX3	210 aa		5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751	ENHO	Q6UWT2	76 aa		5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751	SOSTDC1	Q6X4U4	206 aa		5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751	KRTAP4-5	Q9BYR2	181 aa		5.18	□□□□□ -1.58
SYNE1-231	ENST00000498751	DNAH3	Q8TD57	4116 aa		5.17	□□□□□ -1.58
SYNE1-231	ENST00000498751	NDUFC2	O95298	119 aa		5.17	□□□□□ -1.58
SYNE1-231	ENST00000498751	C5orf38	Q86SI9	138 aa		5.17	□□□□□ -1.58
SYNE1-231	ENST00000498751	NAA38	Q9BRA0	125 aa	Known RBP	5.17	□□□□□ -1.58
SYNE1-231	ENST00000498751	UPK3B	Q9BT76	320 aa		5.17	□□□□□ -1.58
SYNE1-231	ENST00000498751	HTN3	P15516	51 aa		5.16	□□□□□ -1.58
SYNE1-231	ENST00000498751	XCL1	P47992	114 aa		5.16	□□□□□ -1.58
SYNE1-231	ENST00000498751	ESRG	Q1W209	222 aa		5.16	□□□□□ -1.58
SYNE1-231	ENST00000498751	C6orf226	Q5I0X4	101 aa		5.16	□□□□□ -1.58
SYNE1-231	ENST00000498751	MIR7-3HG	Q8N6C7	128 aa		5.16	□□□□□ -1.58
SYNE1-231	ENST00000498751	TRAV13-2	A0A0B4J235	113 aa		5.15	□□□□□ -1.59
SYNE1-231	ENST00000498751		H3BMG7	143 aa		5.15	□□□□□ -1.59
SYNE1-231	ENST00000498751	COX6C	P09669	75 aa		5.15	□□□□□ -1.59
SYNE1-231	ENST00000498751	NANOS2	P60321	138 aa	Known RBP	5.15	□□□□□ -1.59
SYNE1-231	ENST00000498751	B9D2	Q9BPU9	175 aa		5.15	□□□□□ -1.59
SYNE1-231	ENST00000498751	KLK12	Q9UKR0	248 aa		5.15	□□□□□ -1.59
SYNE1-231	ENST00000498751	IGKV3OR2-268	A0A0C4DH90	116 aa		5.14	□□□□□ -1.59
SYNE1-231	ENST00000498751		K7ERU9	68 aa		5.14	□□□□□ -1.59
SYNE1-231	ENST00000498751	TCL1B	O95988	128 aa		5.14	□□□□□ -1.59
SYNE1-231	ENST00000498751	RPL28	P46779	137 aa	Known RBP	5.14	□□□□□ -1.59
SYNE1-231	ENST00000498751	OCIAD2	Q56VL3	154 aa		5.14	□□□□□ -1.59
SYNE1-231	ENST00000498751	WFDC10B	Q8IUB3	73 aa		5.14	□□□□□ -1.59
SYNE1-231	ENST00000498751	TOMM7	Q9P0U1	55 aa		5.14	□□□□□ -1.59
SYNE1-231	ENST00000498751	IGKV2-28	A0A075B6P5	120 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	GAGE12H	A6NDE8	117 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	TRIAP1	O43715	76 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	IGKV2D-28	P01615	120 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	CRP	P02741	224 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	MAL	P21145	153 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	CCL18	P55774	89 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	KRTAP21-3	Q3LHN1	58 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	DAND5	Q8N907	189 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	NTN5	Q8WTR8	489 aa	Predicted RBP	5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	C2orf48	Q96LS8	159 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	SND1-IT1	Q9HBX3	110 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	CBY1	Q9Y3M2	126 aa		5.13	□□□□□ -1.59
SYNE1-231	ENST00000498751	LST1	O00453	97 aa		5.12	□□□□□ -1.59
SYNE1-231	ENST00000498751	NHLRC4	P0CG21	123 aa	Predicted RBP	5.12	□□□□□ -1.59
SYNE1-231	ENST00000498751	RPL13A	P40429	203 aa	Known RBP	5.12	□□□□□ -1.59
SYNE1-231	ENST00000498751	CKS1B	P61024	79 aa		5.12	□□□□□ -1.59
SYNE1-231	ENST00000498751	ATXN8	Q156A1	80 aa		5.12	□□□□□ -1.59
SYNE1-231	ENST00000498751	CFAP161	Q6P656	301 aa		5.12	□□□□□ -1.59
SYNE1-231	ENST00000498751	CLPSL2	Q6UWE3	100 aa		5.12	□□□□□ -1.59
SYNE1-231	ENST00000498751	CARD19	Q96LW7	228 aa		5.12	□□□□□ -1.59
SYNE1-231	ENST00000498751	STAB1	Q9NY15	2570 aa		5.12	□□□□□ -1.59
SYNE1-231	ENST00000498751	ANK2	Q01484	3957 aa		5.11	□□□□□ -1.59
SYNE1-231	ENST00000498751		H3BT86	120 aa		5.11	□□□□□ -1.59
SYNE1-231	ENST00000498751	LINC00158	P58513	81 aa		5.11	□□□□□ -1.59
SYNE1-231	ENST00000498751	SPAG11B	Q08648	103 aa		5.11	□□□□□ -1.59
SYNE1-231	ENST00000498751	LINC01620	Q4KN68	170 aa		5.11	□□□□□ -1.59
SYNE1-231	ENST00000498751	UBE2W	Q96B02	151 aa		5.11	□□□□□ -1.59
SYNE1-231	ENST00000498751	IGLV10-54	A0A075B6I4	117 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751	TRBV10-2	A0A0K0K1G8	114 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751		A0A1B0GX51	115 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751		H0YGX0	51 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751	TRAC	P01848	142 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751	SCGB1C2	P0DMR2	95 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751	PSMB2	P49721	201 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751	WFDC2	Q14508	124 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751	C2orf82	Q6UX34	121 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751	TEN1	Q86WV5	123 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751	LINC00337	Q8N6G1	96 aa		5.1	□□□□□ -1.59
SYNE1-231	ENST00000498751	LINC00588	Q9Y4M8	146 aa		5.1	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms