RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 POM121L12Q8N7R1 296 aa9.43□□□□□ -0.9
PTPRF-215ENST00000496447 RAI1Q7Z5J4 1906 aaPredicted RBP9.42□□□□□ -0.9
PTPRF-215ENST00000496447 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.42□□□□□ -0.9
PTPRF-215ENST00000496447 C10orf25Q5T742 122 aa9.41□□□□□ -0.9
PTPRF-215ENST00000496447 C1orf134Q5TEV5 83 aa9.41□□□□□ -0.9
PTPRF-215ENST00000496447 A0A087WVE0 104 aa9.41□□□□□ -0.9
PTPRF-215ENST00000496447 IGIPA6NJ69 53 aa9.41□□□□□ -0.9
PTPRF-215ENST00000496447 IGLV4-60A0A075B6I1 120 aa9.4□□□□□ -0.9
PTPRF-215ENST00000496447 SOSTDC1Q6X4U4 206 aa9.4□□□□□ -0.9
PTPRF-215ENST00000496447 C9orf116Q5BN46 136 aaPredicted RBP9.4□□□□□ -0.9
PTPRF-215ENST00000496447 REG3GQ6UW15 175 aa9.39□□□□□ -0.91
PTPRF-215ENST00000496447 NHLRC4P0CG21 123 aaPredicted RBP9.39□□□□□ -0.91
PTPRF-215ENST00000496447 SMIM1B2RUZ4 78 aa9.38□□□□□ -0.91
PTPRF-215ENST00000496447 PRO0461Q9UI25 63 aa9.38□□□□□ -0.91
PTPRF-215ENST00000496447 ATG2AQ2TAZ0 1938 aa9.37□□□□□ -0.91
PTPRF-215ENST00000496447 CIRBP-AS1Q8TBR5 109 aa9.37□□□□□ -0.91
PTPRF-215ENST00000496447 PRYO14603 147 aa9.37□□□□□ -0.91
PTPRF-215ENST00000496447 FSHBP01225 129 aa9.37□□□□□ -0.91
PTPRF-215ENST00000496447 TRBV10-3A0A0K0K1G6 114 aa9.36□□□□□ -0.91
PTPRF-215ENST00000496447 COX6A2Q02221 97 aa9.36□□□□□ -0.91
PTPRF-215ENST00000496447 LYPD5Q6UWN5 251 aa9.36□□□□□ -0.91
PTPRF-215ENST00000496447 TSPEAR-AS2P59090 65 aa9.35□□□□□ -0.91
PTPRF-215ENST00000496447 LINC01556Q5JQF7 62 aa9.35□□□□□ -0.91
PTPRF-215ENST00000496447 C1orf137Q5JT78 98 aa9.35□□□□□ -0.91
PTPRF-215ENST00000496447 SMCPP49901 116 aaPredicted RBP9.35□□□□□ -0.91
PTPRF-215ENST00000496447 BEAN1Q3B7T3 259 aa9.35□□□□□ -0.91
PTPRF-215ENST00000496447 TRBV7-6A0A0J9YX20 115 aa9.34□□□□□ -0.91
PTPRF-215ENST00000496447 ZFYVE26Q68DK2 2539 aa9.34□□□□□ -0.91
PTPRF-215ENST00000496447 FHL3Q13643 280 aa9.34□□□□□ -0.91
PTPRF-215ENST00000496447 Q8N9L7 120 aa9.33□□□□□ -0.92
PTPRF-215ENST00000496447 COX8CQ7Z4L0 72 aa9.33□□□□□ -0.92
PTPRF-215ENST00000496447 ABCA12Q86UK0 2595 aa9.33□□□□□ -0.92
PTPRF-215ENST00000496447 C4orf26Q17RF5 130 aa9.33□□□□□ -0.92
PTPRF-215ENST00000496447 NTM-AS1Q6ZSK4 140 aa9.33□□□□□ -0.92
PTPRF-215ENST00000496447 Q6ZSN1 163 aa9.32□□□□□ -0.92
PTPRF-215ENST00000496447 EXPH5Q8NEV8 1989 aa9.32□□□□□ -0.92
PTPRF-215ENST00000496447 F8WDY8 70 aa9.31□□□□□ -0.92
PTPRF-215ENST00000496447 PRR3P79522 188 aaKnown RBP9.31□□□□□ -0.92
PTPRF-215ENST00000496447 A0A1B0GUV1 79 aa9.31□□□□□ -0.92
PTPRF-215ENST00000496447 ADAMTS20P59510 1910 aa9.31□□□□□ -0.92
PTPRF-215ENST00000496447 PRR4Q16378 134 aa9.3□□□□□ -0.92
PTPRF-215ENST00000496447 SBSPONQ8IVN8 264 aa9.3□□□□□ -0.92
PTPRF-215ENST00000496447 Q8N2B8 174 aa9.3□□□□□ -0.92
PTPRF-215ENST00000496447 C2orf48Q96LS8 159 aa9.3□□□□□ -0.92
PTPRF-215ENST00000496447 LINC01546A6NGU7 62 aa9.29□□□□□ -0.92
PTPRF-215ENST00000496447 ESRGQ1W209 222 aa9.29□□□□□ -0.92
PTPRF-215ENST00000496447 FAM30AQ9NZY2 134 aa9.29□□□□□ -0.92
PTPRF-215ENST00000496447 LRRK2Q5S007 2527 aa9.29□□□□□ -0.92
PTPRF-215ENST00000496447 Q8N814 137 aa9.29□□□□□ -0.92
PTPRF-215ENST00000496447 BCE1O60756 84 aa9.28□□□□□ -0.92
PTPRF-215ENST00000496447 AMELXQ99217 191 aa9.28□□□□□ -0.92
PTPRF-215ENST00000496447 CPAMD8Q8IZJ3 1885 aa9.28□□□□□ -0.92
PTPRF-215ENST00000496447 Q8N3U1 123 aa9.28□□□□□ -0.92
PTPRF-215ENST00000496447 TMEM254Q8TBM7 123 aa9.27□□□□□ -0.92
PTPRF-215ENST00000496447 Q9BRP9 147 aa9.27□□□□□ -0.93
PTPRF-215ENST00000496447 LINC00846Q9NV44 126 aa9.27□□□□□ -0.93
PTPRF-215ENST00000496447 A0A087WYN8 130 aa9.27□□□□□ -0.93
PTPRF-215ENST00000496447 ADAMTSL4-AS1Q5T5F5 129 aa9.27□□□□□ -0.93
PTPRF-215ENST00000496447 CELA1Q9UNI1 258 aa9.27□□□□□ -0.93
PTPRF-215ENST00000496447 Q6ZVQ6 151 aa9.26□□□□□ -0.93
PTPRF-215ENST00000496447 TLN2Q9Y4G6 2542 aa9.26□□□□□ -0.93
PTPRF-215ENST00000496447 PSPHP1O15172 72 aa9.26□□□□□ -0.93
PTPRF-215ENST00000496447 IGHV6-1A0A0B4J1U7 121 aa9.25□□□□□ -0.93
PTPRF-215ENST00000496447 MDFIQ99750 246 aa9.25□□□□□ -0.93
PTPRF-215ENST00000496447 CHD8Q9HCK8 2581 aa9.25□□□□□ -0.93
PTPRF-215ENST00000496447 Q6ZRU5 148 aa9.24□□□□□ -0.93
PTPRF-215ENST00000496447 FN1P02751 2386 aaKnown RBP9.24□□□□□ -0.93
PTPRF-215ENST00000496447 CEP295Q9C0D2 2601 aa9.24□□□□□ -0.93
PTPRF-215ENST00000496447 USP9XQ93008 2570 aaPredicted RBP9.24□□□□□ -0.93
PTPRF-215ENST00000496447 ANKRD11Q6UB99 2663 aaPredicted RBP9.24□□□□□ -0.93
PTPRF-215ENST00000496447 EML5Q05BV3 1969 aa9.23□□□□□ -0.93
PTPRF-215ENST00000496447 LINC01561Q8N1V8 128 aa9.22□□□□□ -0.93
PTPRF-215ENST00000496447 KRTAP24-1Q3LI83 254 aa9.21□□□□□ -0.93
PTPRF-215ENST00000496447 CXCL6P80162 114 aa9.21□□□□□ -0.94
PTPRF-215ENST00000496447 C11orf72Q8NBR9 251 aa9.2□□□□□ -0.94
PTPRF-215ENST00000496447 ZNF462Q96JM2 2506 aa9.2□□□□□ -0.94
PTPRF-215ENST00000496447 EP400Q96L91 3159 aa9.2□□□□□ -0.94
PTPRF-215ENST00000496447 RETNLBQ9BQ08 111 aa9.2□□□□□ -0.94
PTPRF-215ENST00000496447 PRLHP81277 87 aa9.19□□□□□ -0.94
PTPRF-215ENST00000496447 LINC01547P58512 204 aaPredicted RBP9.19□□□□□ -0.94
PTPRF-215ENST00000496447 WDR87Q6ZQQ6 2873 aa9.19□□□□□ -0.94
PTPRF-215ENST00000496447 A0A087WSZ3 146 aa9.18□□□□□ -0.94
PTPRF-215ENST00000496447 C22orf24Q9Y442 160 aa9.17□□□□□ -0.94
PTPRF-215ENST00000496447 AGRNO00468 2067 aa9.17□□□□□ -0.94
PTPRF-215ENST00000496447 LIMD2Q9BT23 127 aa9.17□□□□□ -0.94
PTPRF-215ENST00000496447 LINC00208Q96KT6 92 aa9.16□□□□□ -0.94
PTPRF-215ENST00000496447 LINC00575Q6W349 94 aa9.15□□□□□ -0.95
PTPRF-215ENST00000496447 SMCR5Q8TEV8 140 aa9.14□□□□□ -0.95
PTPRF-215ENST00000496447 KIF25-AS1Q9Y6Z4 181 aa9.14□□□□□ -0.95
PTPRF-215ENST00000496447 TET2Q6N021 2002 aaPredicted RBP9.14□□□□□ -0.95
PTPRF-215ENST00000496447 A8MTW9 85 aa9.14□□□□□ -0.95
PTPRF-215ENST00000496447 X6R8D5 127 aa9.14□□□□□ -0.95
PTPRF-215ENST00000496447 COL4A2P08572 1712 aa9.13□□□□□ -0.95
PTPRF-215ENST00000496447 SETD2Q9BYW2 2564 aaPredicted RBP9.13□□□□□ -0.95
PTPRF-215ENST00000496447 DEFB116Q30KQ4 102 aa9.13□□□□□ -0.95
PTPRF-215ENST00000496447 USP9YO00507 2555 aaPredicted RBP9.12□□□□□ -0.95
PTPRF-215ENST00000496447 hDV103S1A0JD37 113 aa9.12□□□□□ -0.95
PTPRF-215ENST00000496447 SRCAPQ6ZRS2 3230 aa9.12□□□□□ -0.95
PTPRF-215ENST00000496447 SPTBN4Q9H254 2564 aa9.11□□□□□ -0.95
PTPRF-215ENST00000496447 LINC00337Q8N6G1 96 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms