RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 CIRBPQ14011 172 aaKnown RBP4.33□□□□□ -1.72
VPS52-219ENST00000493379 PDZD11Q5EBL8 140 aa4.33□□□□□ -1.72
VPS52-219ENST00000493379 LCE5AQ5TCM9 118 aa4.33□□□□□ -1.72
VPS52-219ENST00000493379 CHCHD1Q96BP2 118 aaKnown RBP4.33□□□□□ -1.72
VPS52-219ENST00000493379 VCX2Q9H322 139 aa4.33□□□□□ -1.72
VPS52-219ENST00000493379 IGLV5-37A0A075B6J1 123 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 IGLV5-45A0A087WSX0 123 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 COX7A2LO14548 114 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 PRSS2P07478 247 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 S100A1P23297 94 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 XCL1P47992 114 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 SEC11AP67812 179 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 LCE1DQ5T752 114 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 TEX43Q6ZNM6 134 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 FA2HQ7L5A8 372 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 SCGB3A1Q96QR1 104 aa4.32□□□□□ -1.72
VPS52-219ENST00000493379 DNAH8Q96JB1 4490 aa4.31□□□□□ -1.72
VPS52-219ENST00000493379 IGHV3-64A0A075B6Q5 118 aa4.31□□□□□ -1.72
VPS52-219ENST00000493379 IGKV3OR2-268A0A0C4DH90 116 aa4.31□□□□□ -1.72
VPS52-219ENST00000493379 IFITM10A6NMD0 228 aa4.31□□□□□ -1.72
VPS52-219ENST00000493379 FUSP35637 526 aaKnown RBP eCLIP4.31□□□□□ -1.72
VPS52-219ENST00000493379 COX6A2Q02221 97 aa4.31□□□□□ -1.72
VPS52-219ENST00000493379 KIAA0087Q14695 138 aa4.31□□□□□ -1.72
VPS52-219ENST00000493379 RNASE13Q5GAN3 156 aaKnown RBP4.31□□□□□ -1.72
VPS52-219ENST00000493379 Q6ZN92 141 aa4.31□□□□□ -1.72
VPS52-219ENST00000493379 OR10D4PQ8NGN7 298 aa4.31□□□□□ -1.72
VPS52-219ENST00000493379 C2orf48Q96LS8 159 aa4.31□□□□□ -1.72
VPS52-219ENST00000493379 CST9LQ9H4G1 147 aa4.31□□□□□ -1.72
VPS52-219ENST00000493379 TNXBP22105 4242 aa4.3□□□□□ -1.72
VPS52-219ENST00000493379 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.3□□□□□ -1.72
VPS52-219ENST00000493379 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.3□□□□□ -1.72
VPS52-219ENST00000493379 KRTAP4-8A0A0G2JLE6 195 aa4.3□□□□□ -1.72
VPS52-219ENST00000493379 TINCRA0A1B0GVN0 87 aa4.3□□□□□ -1.72
VPS52-219ENST00000493379 A4D1N5 150 aa4.3□□□□□ -1.72
VPS52-219ENST00000493379 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.3□□□□□ -1.72
VPS52-219ENST00000493379 APOMO95445 188 aa4.3□□□□□ -1.72
VPS52-219ENST00000493379 HBDP02042 147 aa4.3□□□□□ -1.72
VPS52-219ENST00000493379 HERVK_113P63121 156 aa4.3□□□□□ -1.72
VPS52-219ENST00000493379 PMVKQ15126 192 aa4.3□□□□□ -1.72
VPS52-219ENST00000493379 C2orf88Q9BSF0 95 aa4.3□□□□□ -1.72
VPS52-219ENST00000493379 SCO1O75880 301 aa4.29□□□□□ -1.72
VPS52-219ENST00000493379 ATP5LO75964 103 aa4.29□□□□□ -1.72
VPS52-219ENST00000493379 COA6Q5JTJ3 125 aaKnown RBP4.29□□□□□ -1.72
VPS52-219ENST00000493379 ZC2HC1BQ5TFG8 222 aa4.29□□□□□ -1.72
VPS52-219ENST00000493379 C5orf38Q86SI9 138 aa4.29□□□□□ -1.72
VPS52-219ENST00000493379 CHAC1Q9BUX1 264 aa4.29□□□□□ -1.72
VPS52-219ENST00000493379 IGLV4-69A0A075B6H9 119 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 TRAV12-1A0A0B4J245 112 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 A0A0J9YXV3 536 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 NUPR1O60356 82 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST1H2BKO60814 126 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST1H2BJP06899 126 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 TLX1NBP0CAT3 122 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 IGLC3P0DOY3 106 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST1H2BOP23527 126 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST1H2BBP33778 126 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST1H2BDP58876 126 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST1H2BCP62807 126 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HAMPP81172 84 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 SYCNQ0VAF6 134 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST2H2BEQ16778 126 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST1H2BHQ93079 126 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST1H2BNQ99877 126 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 HIST1H2BMQ99879 126 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 MRPL35Q9NZE8 188 aaKnown RBP4.28□□□□□ -1.72
VPS52-219ENST00000493379 CDKN2A-AS1Q9UH64 79 aa4.28□□□□□ -1.72
VPS52-219ENST00000493379 C5orf52A6NGY3 159 aa4.27□□□□□ -1.73
VPS52-219ENST00000493379 SERF1AO75920 110 aa4.27□□□□□ -1.73
VPS52-219ENST00000493379 LINC01620Q4KN68 170 aa4.27□□□□□ -1.73
VPS52-219ENST00000493379 HIGD2BQ4VC39 106 aa4.27□□□□□ -1.73
VPS52-219ENST00000493379 Q6ZRU5 148 aa4.27□□□□□ -1.73
VPS52-219ENST00000493379 Q8IZM0 81 aa4.27□□□□□ -1.73
VPS52-219ENST00000493379 CIRBP-AS1Q8TBR5 109 aa4.27□□□□□ -1.73
VPS52-219ENST00000493379 PACRGQ96M98 296 aaPredicted RBP4.27□□□□□ -1.73
VPS52-219ENST00000493379 PKIGQ9Y2B9 76 aa4.27□□□□□ -1.73
VPS52-219ENST00000493379 SMIM1B2RUZ4 78 aa4.26□□□□□ -1.73
VPS52-219ENST00000493379 PANO1I0J062 215 aa4.26□□□□□ -1.73
VPS52-219ENST00000493379 ATP6V1G1O75348 118 aa4.26□□□□□ -1.73
VPS52-219ENST00000493379 HSBP1O75506 76 aa4.26□□□□□ -1.73
VPS52-219ENST00000493379 PMCHL1Q16048 86 aa4.26□□□□□ -1.73
VPS52-219ENST00000493379 BAGE3Q86Y29 109 aa4.26□□□□□ -1.73
VPS52-219ENST00000493379 SPACA4Q8TDM5 124 aa4.26□□□□□ -1.73
VPS52-219ENST00000493379 IFI27L1Q96BM0 104 aa4.26□□□□□ -1.73
VPS52-219ENST00000493379 LINC00474Q9P2X8 69 aa4.26□□□□□ -1.73
VPS52-219ENST00000493379 TRBV30A0A0K0K1B3 111 aa4.25□□□□□ -1.73
VPS52-219ENST00000493379 KRTAP10-4P60372 401 aaPredicted RBP4.25□□□□□ -1.73
VPS52-219ENST00000493379 SPAG11BQ08648 103 aa4.25□□□□□ -1.73
VPS52-219ENST00000493379 SCXQ7RTU7 201 aa4.25□□□□□ -1.73
VPS52-219ENST00000493379 FAM19A2Q8N3H0 131 aa4.25□□□□□ -1.73
VPS52-219ENST00000493379 ORAOV1Q8WV07 137 aa4.25□□□□□ -1.73
VPS52-219ENST00000493379 LINC00526Q96FQ7 95 aa4.25□□□□□ -1.73
VPS52-219ENST00000493379 CARD19Q96LW7 228 aa4.25□□□□□ -1.73
VPS52-219ENST00000493379 CAMK2N2Q96S95 79 aa4.25□□□□□ -1.73
VPS52-219ENST00000493379 GEMIN7Q9H840 131 aaKnown RBP4.25□□□□□ -1.73
VPS52-219ENST00000493379 PLAC8Q9NZF1 115 aa4.25□□□□□ -1.73
VPS52-219ENST00000493379 NDUFA1O15239 70 aa4.24□□□□□ -1.73
VPS52-219ENST00000493379 LEPROTL1O95214 131 aa4.24□□□□□ -1.73
VPS52-219ENST00000493379 ZNF22P17026 224 aaPredicted RBP4.24□□□□□ -1.73
VPS52-219ENST00000493379 CXCL5P42830 114 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms