RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 C2orf82Q6UX34 121 aa14.36□□□□□ -0.11
SMC4-221ENST00000489573 LITAFQ99732 161 aa14.36□□□□□ -0.11
SMC4-221ENST00000489573 CIRBPQ14011 172 aaKnown RBP14.35□□□□□ -0.11
SMC4-221ENST00000489573 SNHG12Q9BXW3 62 aa14.35□□□□□ -0.11
SMC4-221ENST00000489573 EREGO14944 169 aa14.34□□□□□ -0.11
SMC4-221ENST00000489573 HIGD2BQ4VC39 106 aa14.34□□□□□ -0.11
SMC4-221ENST00000489573 BVES-AS1Q5T3Y7 98 aa14.34□□□□□ -0.11
SMC4-221ENST00000489573 RYR3Q15413 4870 aa14.34□□□□□ -0.11
SMC4-221ENST00000489573 BATFQ16520 125 aa14.34□□□□□ -0.11
SMC4-221ENST00000489573 ZNF561-AS1K7EIQ3 104 aa14.33□□□□□ -0.12
SMC4-221ENST00000489573 GCSHP23434 173 aa14.33□□□□□ -0.12
SMC4-221ENST00000489573 CEND1Q8N111 149 aa14.33□□□□□ -0.12
SMC4-221ENST00000489573 C6orf223Q8N319 242 aa14.33□□□□□ -0.12
SMC4-221ENST00000489573 NTN5Q8WTR8 489 aaPredicted RBP14.33□□□□□ -0.12
SMC4-221ENST00000489573 LINC00526Q96FQ7 95 aa14.33□□□□□ -0.12
SMC4-221ENST00000489573 GVQW2A0A096LPI5 108 aaPredicted RBP14.32□□□□□ -0.12
SMC4-221ENST00000489573 ADAMTSL4-AS1Q5T5F5 129 aa14.31□□□□□ -0.12
SMC4-221ENST00000489573 SPANXDQ9BXN6 97 aa14.31□□□□□ -0.12
SMC4-221ENST00000489573 SPANXCQ9NY87 97 aa14.31□□□□□ -0.12
SMC4-221ENST00000489573 LY6G6CO95867 125 aa14.3□□□□□ -0.12
SMC4-221ENST00000489573 SMIM13P0DJ93 91 aa14.3□□□□□ -0.12
SMC4-221ENST00000489573 LINC00476Q8WZB0 136 aa14.3□□□□□ -0.12
SMC4-221ENST00000489573 USP17L23D6RBM5 183 aa14.3□□□□□ -0.12
SMC4-221ENST00000489573 Q6ZVH6 145 aa14.3□□□□□ -0.12
SMC4-221ENST00000489573 ERG28Q9UKR5 140 aa14.3□□□□□ -0.12
SMC4-221ENST00000489573 A0A0U1RRA0 63 aa14.29□□□□□ -0.12
SMC4-221ENST00000489573 M0R2N4 97 aa14.29□□□□□ -0.12
SMC4-221ENST00000489573 PSCAO43653 123 aa14.29□□□□□ -0.12
SMC4-221ENST00000489573 C2orf48Q96LS8 159 aa14.29□□□□□ -0.12
SMC4-221ENST00000489573 DNAH1Q9P2D7 4330 aa14.29□□□□□ -0.12
SMC4-221ENST00000489573 FXYD2P54710 66 aa14.28□□□□□ -0.12
SMC4-221ENST00000489573 UNQ6190/PRO20217Q6UXQ8 127 aa14.28□□□□□ -0.12
SMC4-221ENST00000489573 VPS13DQ5THJ4 4388 aa14.28□□□□□ -0.12
SMC4-221ENST00000489573 C10orf25Q5T742 122 aa14.27□□□□□ -0.12
SMC4-221ENST00000489573 DAND5Q8N907 189 aa14.27□□□□□ -0.12
SMC4-221ENST00000489573 CAMK2N2Q96S95 79 aa14.27□□□□□ -0.12
SMC4-221ENST00000489573 TENM2Q9NT68 2774 aa14.27□□□□□ -0.13
SMC4-221ENST00000489573 F8WDY8 70 aa14.26□□□□□ -0.13
SMC4-221ENST00000489573 PTTG1IPP53801 180 aa14.26□□□□□ -0.13
SMC4-221ENST00000489573 LINC00158P58513 81 aa14.26□□□□□ -0.13
SMC4-221ENST00000489573 LYSTQ99698 3801 aa14.26□□□□□ -0.13
SMC4-221ENST00000489573 PFN2P35080 140 aa14.26□□□□□ -0.13
SMC4-221ENST00000489573 Q6ZR54 194 aa14.26□□□□□ -0.13
SMC4-221ENST00000489573 MUSTN1Q8IVN3 82 aa14.25□□□□□ -0.13
SMC4-221ENST00000489573 IFITM1P13164 125 aa14.24□□□□□ -0.13
SMC4-221ENST00000489573 LECT2O14960 151 aa14.23□□□□□ -0.13
SMC4-221ENST00000489573 COX17Q14061 63 aa14.23□□□□□ -0.13
SMC4-221ENST00000489573 MIR7-3HGQ8N6C7 128 aa14.23□□□□□ -0.13
SMC4-221ENST00000489573 C6orf48Q9UBA6 75 aa14.23□□□□□ -0.13
SMC4-221ENST00000489573 TRBV30A0A0K0K1B3 111 aa14.22□□□□□ -0.13
SMC4-221ENST00000489573 NPC2P61916 151 aa14.22□□□□□ -0.13
SMC4-221ENST00000489573 C9orf116Q5BN46 136 aaPredicted RBP14.22□□□□□ -0.13
SMC4-221ENST00000489573 Q6ZRN7 208 aaPredicted RBP14.22□□□□□ -0.13
SMC4-221ENST00000489573 TMEM238LA0A1B0GVL6 79 aa14.22□□□□□ -0.13
SMC4-221ENST00000489573 A6NDN8 102 aa14.22□□□□□ -0.13
SMC4-221ENST00000489573 A6NJY4 79 aa14.22□□□□□ -0.13
SMC4-221ENST00000489573 RPL24P83731 157 aaKnown RBP14.22□□□□□ -0.13
SMC4-221ENST00000489573 Q6ZRU5 148 aa14.22□□□□□ -0.13
SMC4-221ENST00000489573 LINC00308Q8TCZ7 52 aa14.22□□□□□ -0.13
SMC4-221ENST00000489573 SYCNQ0VAF6 134 aa14.21□□□□□ -0.14
SMC4-221ENST00000489573 WFDC2Q14508 124 aa14.21□□□□□ -0.14
SMC4-221ENST00000489573 COL5A1-AS1Q5SY13 56 aa14.21□□□□□ -0.14
SMC4-221ENST00000489573 COPS9Q8WXC6 57 aa14.21□□□□□ -0.14
SMC4-221ENST00000489573 LBHQ53QV2 105 aaPredicted RBP14.2□□□□□ -0.14
SMC4-221ENST00000489573 NHP2Q9NX24 153 aaKnown RBP14.19□□□□□ -0.14
SMC4-221ENST00000489573 A4D1N5 150 aa14.18□□□□□ -0.14
SMC4-221ENST00000489573 SOSTDC1Q6X4U4 206 aa14.18□□□□□ -0.14
SMC4-221ENST00000489573 EIF4EBP3O60516 100 aaPredicted RBP14.17□□□□□ -0.14
SMC4-221ENST00000489573 CARD19Q96LW7 228 aa14.17□□□□□ -0.14
SMC4-221ENST00000489573 PPDPFQ9H3Y8 114 aa14.17□□□□□ -0.14
SMC4-221ENST00000489573 C14orf177Q52M58 125 aa14.17□□□□□ -0.14
SMC4-221ENST00000489573 SLPIP03973 132 aa14.15□□□□□ -0.14
SMC4-221ENST00000489573 A0A1B0GWB2 263 aa14.14□□□□□ -0.15
SMC4-221ENST00000489573 LRCOL1A6NCL2 159 aa14.14□□□□□ -0.15
SMC4-221ENST00000489573 RNF151Q2KHN1 245 aa14.14□□□□□ -0.15
SMC4-221ENST00000489573 ALMS1Q8TCU4 4167 aa14.14□□□□□ -0.15
SMC4-221ENST00000489573 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.13□□□□□ -0.15
SMC4-221ENST00000489573 K7ERJ3 54 aa14.13□□□□□ -0.15
SMC4-221ENST00000489573 C1orf134Q5TEV5 83 aa14.13□□□□□ -0.15
SMC4-221ENST00000489573 SND1-IT1Q9HBX3 110 aa14.12□□□□□ -0.15
SMC4-221ENST00000489573 CFC1BP0CG36 223 aa14.11□□□□□ -0.15
SMC4-221ENST00000489573 CFC1P0CG37 223 aa14.11□□□□□ -0.15
SMC4-221ENST00000489573 A0A0B4J2C4 111 aa14.09□□□□□ -0.15
SMC4-221ENST00000489573 LOC107984156A0A0G2JMH3 177 aa14.09□□□□□ -0.15
SMC4-221ENST00000489573 NDUFC2-KCTD14E9PQ53 114 aa14.09□□□□□ -0.15
SMC4-221ENST00000489573 CNBPP62633 177 aaKnown RBP14.09□□□□□ -0.15
SMC4-221ENST00000489573 ARL17AQ8IVW1 177 aa14.09□□□□□ -0.15
SMC4-221ENST00000489573 TAX1BP3O14907 124 aa14.09□□□□□ -0.15
SMC4-221ENST00000489573 RAB37Q96AX2 223 aa14.08□□□□□ -0.16
SMC4-221ENST00000489573 SACSQ9NZJ4 4579 aa14.07□□□□□ -0.16
SMC4-221ENST00000489573 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.06□□□□□ -0.16
SMC4-221ENST00000489573 TLX1NBP0CAT3 122 aa14.06□□□□□ -0.16
SMC4-221ENST00000489573 A0A087WTM6 91 aa14.05□□□□□ -0.16
SMC4-221ENST00000489573 RYR2Q92736 4967 aa14.05□□□□□ -0.16
SMC4-221ENST00000489573 DNAH6Q9C0G6 4158 aa14.05□□□□□ -0.16
SMC4-221ENST00000489573 Q8N814 137 aa14.05□□□□□ -0.16
SMC4-221ENST00000489573 PRO1854Q9UHT4 67 aa14.05□□□□□ -0.16
SMC4-221ENST00000489573 Q6ZRP5 223 aa14.04□□□□□ -0.16
SMC4-221ENST00000489573 XAGE1AQ9HD64 81 aa14.04□□□□□ -0.16
SMC4-221ENST00000489573 DNAH10Q8IVF4 4471 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms