RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 TRBV30A0A0K0K1B3 111 aa9.37□□□□□ -0.91
TRIM54-204ENST00000488321 TINCRA0A1B0GVN0 87 aa9.37□□□□□ -0.91
TRIM54-204ENST00000488321 HBDP02042 147 aa9.37□□□□□ -0.91
TRIM54-204ENST00000488321 NDUFA6P56556 154 aa9.37□□□□□ -0.91
TRIM54-204ENST00000488321 RAB5BP61020 215 aa9.37□□□□□ -0.91
TRIM54-204ENST00000488321 PMCHL1Q16048 86 aa9.37□□□□□ -0.91
TRIM54-204ENST00000488321 Q6ZRP5 223 aa9.37□□□□□ -0.91
TRIM54-204ENST00000488321 YPEL4Q96NS1 127 aa9.37□□□□□ -0.91
TRIM54-204ENST00000488321 TLX1NBP0CAT3 122 aa9.36□□□□□ -0.91
TRIM54-204ENST00000488321 PRR3P79522 188 aaKnown RBP9.36□□□□□ -0.91
TRIM54-204ENST00000488321 Q8IZM0 81 aa9.36□□□□□ -0.91
TRIM54-204ENST00000488321 A0A096LNJ9 63 aa9.35□□□□□ -0.91
TRIM54-204ENST00000488321 OXTP01178 125 aa9.34□□□□□ -0.91
TRIM54-204ENST00000488321 SMIM1B2RUZ4 78 aa9.33□□□□□ -0.92
TRIM54-204ENST00000488321 NDUFC2-KCTD14E9PQ53 114 aa9.33□□□□□ -0.92
TRIM54-204ENST00000488321 SPINK8P0C7L1 97 aa9.33□□□□□ -0.92
TRIM54-204ENST00000488321 PHF5AQ7RTV0 110 aaKnown RBP9.33□□□□□ -0.92
TRIM54-204ENST00000488321 FAM19A5Q7Z5A7 132 aaPredicted RBP9.33□□□□□ -0.92
TRIM54-204ENST00000488321 LRP1Q07954 4544 aaKnown RBP9.32□□□□□ -0.92
TRIM54-204ENST00000488321 IGLV5-45A0A087WSX0 123 aa9.32□□□□□ -0.92
TRIM54-204ENST00000488321 FAM168BA1KXE4 195 aa9.32□□□□□ -0.92
TRIM54-204ENST00000488321 PDZD11Q5EBL8 140 aa9.32□□□□□ -0.92
TRIM54-204ENST00000488321 F8VRH5 84 aa9.31□□□□□ -0.92
TRIM54-204ENST00000488321 H3BRM9 83 aa9.31□□□□□ -0.92
TRIM54-204ENST00000488321 ATP5LO75964 103 aa9.31□□□□□ -0.92
TRIM54-204ENST00000488321 CXCL5P42830 114 aa9.31□□□□□ -0.92
TRIM54-204ENST00000488321 COX7B2Q8TF08 81 aa9.31□□□□□ -0.92
TRIM54-204ENST00000488321 BAGE3Q86Y29 109 aa9.3□□□□□ -0.92
TRIM54-204ENST00000488321 CHCHD1Q96BP2 118 aaKnown RBP9.3□□□□□ -0.92
TRIM54-204ENST00000488321 TRGC2P03986 189 aa9.29□□□□□ -0.92
TRIM54-204ENST00000488321 IGLC3P0DOY3 106 aa9.29□□□□□ -0.92
TRIM54-204ENST00000488321 FAT3Q8TDW7 4589 aa9.29□□□□□ -0.92
TRIM54-204ENST00000488321 PKHD1L1Q86WI1 4243 aa9.29□□□□□ -0.92
TRIM54-204ENST00000488321 C9orf129Q5T035 196 aaKnown RBP9.28□□□□□ -0.92
TRIM54-204ENST00000488321 PSORS1C2Q9UIG4 136 aa9.28□□□□□ -0.92
TRIM54-204ENST00000488321 M0QXV9 152 aa9.27□□□□□ -0.93
TRIM54-204ENST00000488321 HSBP1O75506 76 aa9.27□□□□□ -0.93
TRIM54-204ENST00000488321 XAGE1AQ9HD64 81 aa9.27□□□□□ -0.93
TRIM54-204ENST00000488321 ZNF22P17026 224 aaPredicted RBP9.26□□□□□ -0.93
TRIM54-204ENST00000488321 C1orf137Q5JT78 98 aa9.26□□□□□ -0.93
TRIM54-204ENST00000488321 UBE2BP63146 152 aa9.25□□□□□ -0.93
TRIM54-204ENST00000488321 TMEM170BQ5T4T1 132 aa9.25□□□□□ -0.93
TRIM54-204ENST00000488321 SPINK6Q6UWN8 80 aa9.25□□□□□ -0.93
TRIM54-204ENST00000488321 KRTAP7-1Q8IUC3 87 aa9.25□□□□□ -0.93
TRIM54-204ENST00000488321 CHTOPQ9Y3Y2 248 aaKnown RBP9.25□□□□□ -0.93
TRIM54-204ENST00000488321 C11orf86A6NJI1 115 aa9.24□□□□□ -0.93
TRIM54-204ENST00000488321 FAM19A2Q8N3H0 131 aa9.24□□□□□ -0.93
TRIM54-204ENST00000488321 IFI27L1Q96BM0 104 aa9.24□□□□□ -0.93
TRIM54-204ENST00000488321 IGLV5-39A0A0G2JS06 123 aa9.22□□□□□ -0.93
TRIM54-204ENST00000488321 COLCA2A8K830 154 aa9.22□□□□□ -0.93
TRIM54-204ENST00000488321 SRSF9Q13242 221 aaKnown RBP eCLIP9.22□□□□□ -0.93
TRIM54-204ENST00000488321 SERTAD4-AS1Q5TG53 156 aa9.22□□□□□ -0.93
TRIM54-204ENST00000488321 KRTAP11-1Q8IUC1 163 aa9.22□□□□□ -0.93
TRIM54-204ENST00000488321 SERF1AO75920 110 aa9.21□□□□□ -0.94
TRIM54-204ENST00000488321 REG3GQ6UW15 175 aa9.21□□□□□ -0.94
TRIM54-204ENST00000488321 TRAV12-1A0A0B4J245 112 aa9.2□□□□□ -0.94
TRIM54-204ENST00000488321 H0Y8G0 127 aa9.2□□□□□ -0.94
TRIM54-204ENST00000488321 PFN2P35080 140 aa9.2□□□□□ -0.94
TRIM54-204ENST00000488321 C22orf24Q9Y442 160 aa9.2□□□□□ -0.94
TRIM54-204ENST00000488321 IGLV7-43P04211 117 aa9.19□□□□□ -0.94
TRIM54-204ENST00000488321 MT1HL1P0DM35 61 aa9.19□□□□□ -0.94
TRIM54-204ENST00000488321 LBHQ53QV2 105 aaPredicted RBP9.19□□□□□ -0.94
TRIM54-204ENST00000488321 SCO1O75880 301 aa9.18□□□□□ -0.94
TRIM54-204ENST00000488321 LEPROTL1O95214 131 aa9.18□□□□□ -0.94
TRIM54-204ENST00000488321 ZNF625Q96I27 306 aaPredicted RBP9.18□□□□□ -0.94
TRIM54-204ENST00000488321 LINC00310P59036 64 aa9.17□□□□□ -0.94
TRIM54-204ENST00000488321 LINC01600Q96MT4 127 aa9.17□□□□□ -0.94
TRIM54-204ENST00000488321 TMEM223A0PJW6 202 aa9.16□□□□□ -0.94
TRIM54-204ENST00000488321 FABP4P15090 132 aa9.16□□□□□ -0.94
TRIM54-204ENST00000488321 MRPL55Q7Z7F7 128 aaKnown RBP9.16□□□□□ -0.94
TRIM54-204ENST00000488321 ERG28Q9UKR5 140 aa9.16□□□□□ -0.94
TRIM54-204ENST00000488321 NUPR1O60356 82 aa9.15□□□□□ -0.94
TRIM54-204ENST00000488321 SFTA2Q6UW10 78 aa9.15□□□□□ -0.94
TRIM54-204ENST00000488321 DIRC1Q969H9 104 aa9.15□□□□□ -0.94
TRIM54-204ENST00000488321 HSPB8Q9UJY1 196 aa9.15□□□□□ -0.94
TRIM54-204ENST00000488321 NKAPP1Q8N9T2 125 aa9.14□□□□□ -0.95
TRIM54-204ENST00000488321 TP73-AS1Q9UF72 201 aa9.14□□□□□ -0.95
TRIM54-204ENST00000488321 GAGE10A6NGK3 116 aa9.13□□□□□ -0.95
TRIM54-204ENST00000488321 ODF1Q14990 250 aa9.13□□□□□ -0.95
TRIM54-204ENST00000488321 PLA2G2DQ9UNK4 145 aa9.13□□□□□ -0.95
TRIM54-204ENST00000488321 RPL37AP8A6NKH3 93 aa9.12□□□□□ -0.95
TRIM54-204ENST00000488321 COX17Q14061 63 aa9.12□□□□□ -0.95
TRIM54-204ENST00000488321 SND1-IT1Q9HBX3 110 aa9.12□□□□□ -0.95
TRIM54-204ENST00000488321 A0A0U1RRA0 63 aa9.11□□□□□ -0.95
TRIM54-204ENST00000488321 H0Y9J4 135 aa9.11□□□□□ -0.95
TRIM54-204ENST00000488321 LINC00158P58513 81 aa9.11□□□□□ -0.95
TRIM54-204ENST00000488321 LINC00167Q96N53 147 aa9.11□□□□□ -0.95
TRIM54-204ENST00000488321 HMCN2Q8NDA2 5059 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 IGLV5-37A0A075B6J1 123 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 HIST1H2BKO60814 126 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 HIST1H2BJP06899 126 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 HIST1H2BOP23527 126 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 PLNP26678 52 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 HIST1H2BBP33778 126 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 HIST1H2BDP58876 126 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 HIST1H2BCP62807 126 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 HIST2H2BEQ16778 126 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.09□□□□□ -0.95
TRIM54-204ENST00000488321 HIST1H2BHQ93079 126 aa9.09□□□□□ -0.95
TRIM54-204ENST00000488321 HIST1H2BNQ99877 126 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms