RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 ALKBH7Q9BT30 221 aaPredicted RBP5.19□□□□□ -1.58
COL17A1-207ENST00000488320 NDUFA12Q9UI09 145 aa5.19□□□□□ -1.58
COL17A1-207ENST00000488320 IGKV2-28A0A075B6P5 120 aa5.18□□□□□ -1.58
COL17A1-207ENST00000488320 SMLR1H3BR10 107 aa5.18□□□□□ -1.58
COL17A1-207ENST00000488320 IGKV2D-28P01615 120 aa5.18□□□□□ -1.58
COL17A1-207ENST00000488320 IFI27P40305 119 aaPredicted RBP5.18□□□□□ -1.58
COL17A1-207ENST00000488320 CT83Q5H943 113 aa5.18□□□□□ -1.58
COL17A1-207ENST00000488320 C20orf78Q9BR46 151 aa5.18□□□□□ -1.58
COL17A1-207ENST00000488320 CKS2P33552 79 aa5.17□□□□□ -1.58
COL17A1-207ENST00000488320 ZNF345Q14585 488 aa5.17□□□□□ -1.58
COL17A1-207ENST00000488320 MRPL51Q4U2R6 128 aaKnown RBP5.17□□□□□ -1.58
COL17A1-207ENST00000488320 Q8IZM0 81 aa5.17□□□□□ -1.58
COL17A1-207ENST00000488320 PLEKHB2Q96CS7 222 aa5.17□□□□□ -1.58
COL17A1-207ENST00000488320 F8VRH5 84 aa5.16□□□□□ -1.58
COL17A1-207ENST00000488320 KRTAP19-2Q3LHN2 52 aa5.16□□□□□ -1.58
COL17A1-207ENST00000488320 TEX43Q6ZNM6 134 aa5.16□□□□□ -1.58
COL17A1-207ENST00000488320 TMEM141Q96I45 108 aa5.16□□□□□ -1.58
COL17A1-207ENST00000488320 C2orf88Q9BSF0 95 aa5.16□□□□□ -1.58
COL17A1-207ENST00000488320 LINC00862A6NCI5 91 aa5.15□□□□□ -1.59
COL17A1-207ENST00000488320 RAB5AP20339 215 aa5.15□□□□□ -1.59
COL17A1-207ENST00000488320 TAGLN2P37802 199 aaKnown RBP5.15□□□□□ -1.59
COL17A1-207ENST00000488320 CEBPGP53567 150 aa5.15□□□□□ -1.59
COL17A1-207ENST00000488320 FAM104BQ5XKR9 115 aa5.15□□□□□ -1.59
COL17A1-207ENST00000488320 CBLN2Q8IUK8 224 aa5.15□□□□□ -1.59
COL17A1-207ENST00000488320 Q8NBF4 154 aa5.15□□□□□ -1.59
COL17A1-207ENST00000488320 SMIM2Q9BVW6 85 aa5.15□□□□□ -1.59
COL17A1-207ENST00000488320 IGLV8-61A0A075B6I0 122 aa5.14□□□□□ -1.59
COL17A1-207ENST00000488320 IGLV4-3A0A075B6K6 122 aa5.14□□□□□ -1.59
COL17A1-207ENST00000488320 TRBV24-1A0A075B6N3 115 aa5.14□□□□□ -1.59
COL17A1-207ENST00000488320 SCO1O75880 301 aa5.14□□□□□ -1.59
COL17A1-207ENST00000488320 TNFRSF6BO95407 300 aa5.14□□□□□ -1.59
COL17A1-207ENST00000488320 SPINK1P00995 79 aa5.14□□□□□ -1.59
COL17A1-207ENST00000488320 RAB5BP61020 215 aa5.14□□□□□ -1.59
COL17A1-207ENST00000488320 LCE1DQ5T752 114 aa5.14□□□□□ -1.59
COL17A1-207ENST00000488320 GNB1LQ9BYB4 327 aa5.14□□□□□ -1.59
COL17A1-207ENST00000488320 EIF5A2Q9GZV4 153 aaKnown RBP5.14□□□□□ -1.59
COL17A1-207ENST00000488320 IGLV5-37A0A075B6J1 123 aa5.13□□□□□ -1.59
COL17A1-207ENST00000488320 ZC2HC1BQ5TFG8 222 aa5.13□□□□□ -1.59
COL17A1-207ENST00000488320 HIGD2AQ9BW72 106 aa5.13□□□□□ -1.59
COL17A1-207ENST00000488320 KRTAP4-7Q9BYR0 210 aa5.13□□□□□ -1.59
COL17A1-207ENST00000488320 TMEM126AQ9H061 195 aa5.13□□□□□ -1.59
COL17A1-207ENST00000488320 PYGO1Q9Y3Y4 419 aa5.13□□□□□ -1.59
COL17A1-207ENST00000488320 HMSDA8MTL9 139 aa5.12□□□□□ -1.59
COL17A1-207ENST00000488320 TMEM238C9JI98 176 aa5.12□□□□□ -1.59
COL17A1-207ENST00000488320 GHRHP01286 108 aa5.12□□□□□ -1.59
COL17A1-207ENST00000488320 CXCL5P42830 114 aa5.12□□□□□ -1.59
COL17A1-207ENST00000488320 VCX2Q9H322 139 aa5.12□□□□□ -1.59
COL17A1-207ENST00000488320 D6R8Y8 96 aa5.11□□□□□ -1.59
COL17A1-207ENST00000488320 PCOTHQ58A44 107 aa5.11□□□□□ -1.59
COL17A1-207ENST00000488320 FAM19A2Q8N3H0 131 aa5.11□□□□□ -1.59
COL17A1-207ENST00000488320 SPRR4Q96PI1 79 aa5.11□□□□□ -1.59
COL17A1-207ENST00000488320 OSTCQ9NRP0 149 aa5.11□□□□□ -1.59
COL17A1-207ENST00000488320 CDKN2A-AS1Q9UH64 79 aa5.1□□□□□ -1.59
COL17A1-207ENST00000488320 NAT8BQ9UHF3 227 aa5.1□□□□□ -1.59
COL17A1-207ENST00000488320 ZNF706Q9Y5V0 76 aaPredicted RBP5.1□□□□□ -1.59
COL17A1-207ENST00000488320 TMEM250H0YL14 139 aa5.09□□□□□ -1.59
COL17A1-207ENST00000488320 NPYP01303 97 aa5.09□□□□□ -1.59
COL17A1-207ENST00000488320 HERVK_113P63121 156 aa5.09□□□□□ -1.59
COL17A1-207ENST00000488320 COX6B2Q6YFQ2 88 aa5.09□□□□□ -1.59
COL17A1-207ENST00000488320 GEMIN7Q9H840 131 aaKnown RBP5.09□□□□□ -1.59
COL17A1-207ENST00000488320 M0R378 163 aa5.08□□□□□ -1.6
COL17A1-207ENST00000488320 SLC25A20O43772 301 aa5.08□□□□□ -1.6
COL17A1-207ENST00000488320 SEC11AP67812 179 aa5.08□□□□□ -1.6
COL17A1-207ENST00000488320 C2orf66Q6UXQ4 117 aa5.08□□□□□ -1.6
COL17A1-207ENST00000488320 LINC01551Q86U37 167 aa5.08□□□□□ -1.6
COL17A1-207ENST00000488320 Q8N377 158 aa5.08□□□□□ -1.6
COL17A1-207ENST00000488320 COX7B2Q8TF08 81 aa5.08□□□□□ -1.6
COL17A1-207ENST00000488320 AMELXQ99217 191 aa5.08□□□□□ -1.6
COL17A1-207ENST00000488320 V9GYV3 84 aa5.08□□□□□ -1.6
COL17A1-207ENST00000488320 LOC389332A0A1B0GUA5 103 aa5.07□□□□□ -1.6
COL17A1-207ENST00000488320 F8W036 122 aa5.07□□□□□ -1.6
COL17A1-207ENST00000488320 RPL24P83731 157 aaKnown RBP5.07□□□□□ -1.6
COL17A1-207ENST00000488320 FAM19A3Q7Z5A8 133 aa5.07□□□□□ -1.6
COL17A1-207ENST00000488320 SMIM7Q9BQ49 75 aa5.07□□□□□ -1.6
COL17A1-207ENST00000488320 CYSLTR1Q9Y271 337 aa5.07□□□□□ -1.6
COL17A1-207ENST00000488320 FLGP20930 4061 aaPredicted RBP5.06□□□□□ -1.6
COL17A1-207ENST00000488320 A0A1B0GW15 77 aa5.06□□□□□ -1.6
COL17A1-207ENST00000488320 PPBPP02775 128 aa5.06□□□□□ -1.6
COL17A1-207ENST00000488320 FAM74A3Q4VXF1 159 aa5.06□□□□□ -1.6
COL17A1-207ENST00000488320 TMEM136Q6ZRR5 245 aa5.06□□□□□ -1.6
COL17A1-207ENST00000488320 SSPOA2VEC9 5147 aa5.06□□□□□ -1.6
COL17A1-207ENST00000488320 S100A8P05109 93 aa5.05□□□□□ -1.6
COL17A1-207ENST00000488320 PFN2P35080 140 aa5.05□□□□□ -1.6
COL17A1-207ENST00000488320 RAB14P61106 215 aa5.05□□□□□ -1.6
COL17A1-207ENST00000488320 PDZD11Q5EBL8 140 aa5.05□□□□□ -1.6
COL17A1-207ENST00000488320 ORMDL3Q8N138 153 aa5.05□□□□□ -1.6
COL17A1-207ENST00000488320 PRELID3AQ96N28 172 aa5.05□□□□□ -1.6
COL17A1-207ENST00000488320 IGLV9-49A0A0B4J1Y8 123 aa5.04□□□□□ -1.6
COL17A1-207ENST00000488320 VPREB1P12018 145 aa5.04□□□□□ -1.6
COL17A1-207ENST00000488320 RPS29P62273 56 aaKnown RBP5.04□□□□□ -1.6
COL17A1-207ENST00000488320 PAPPA-AS1Q5QFB9 102 aa5.04□□□□□ -1.6
COL17A1-207ENST00000488320 MRPL54Q6P161 138 aaKnown RBP5.04□□□□□ -1.6
COL17A1-207ENST00000488320 BATF3Q9NR55 127 aa5.04□□□□□ -1.6
COL17A1-207ENST00000488320 USH2AO75445 5202 aa5.04□□□□□ -1.6
COL17A1-207ENST00000488320 C9orf92A6NGG3 77 aa5.03□□□□□ -1.6
COL17A1-207ENST00000488320 SMIM1B2RUZ4 78 aa5.03□□□□□ -1.6
COL17A1-207ENST00000488320 ATP5LO75964 103 aa5.03□□□□□ -1.6
COL17A1-207ENST00000488320 MOBPQ13875 183 aa5.03□□□□□ -1.6
COL17A1-207ENST00000488320 SSBP3-AS1Q7Z2R9 100 aa5.03□□□□□ -1.6
COL17A1-207ENST00000488320 AKAP14Q86UN6 197 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms