RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 BCE1O60756 84 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 LEPROTL1O95214 131 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 IGHV3-33P01772 117 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 TFF1P04155 84 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 ACYP1P07311 99 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 IFI6P09912 130 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 PRB4P10163 310 aaPredicted RBP0.55□□□□□ -2.32
SMC4-220ENST00000488017 DEFA4P12838 97 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 RPL27AP46776 148 aaKnown RBP0.55□□□□□ -2.32
SMC4-220ENST00000488017 SPINT3P49223 89 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 C9orf116Q5BN46 136 aaPredicted RBP0.55□□□□□ -2.32
SMC4-220ENST00000488017 C1orf134Q5TEV5 83 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 KRTAP26-1Q6PEX3 210 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 ZNF818PQ6ZRF7 136 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 ZNF826PQ6ZT77 177 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 RPS27LQ71UM5 84 aaKnown RBP0.55□□□□□ -2.32
SMC4-220ENST00000488017 C6orf201Q7Z4U5 140 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 DYNAPQ8N1N2 210 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 Q8N6K4 173 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 TMEM263Q8WUH6 116 aaKnown RBP0.55□□□□□ -2.32
SMC4-220ENST00000488017 IFI27L1Q96BM0 104 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 TMEM141Q96I45 108 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 FAM167A-AS1Q96KT0 104 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 OBSCN-AS1Q96MR7 158 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 AMELXQ99217 191 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 MGST2Q99735 147 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 RETNLBQ9BQ08 111 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 CDC42SE2Q9NRR3 84 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 CDC42SE1Q9NRR8 79 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 TAS2R4Q9NYW5 299 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 GNG13Q9P2W3 67 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 TECTAO75443 2155 aa0.55□□□□□ -2.32
SMC4-220ENST00000488017 F5P12259 2224 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 UTRNP46939 3433 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.54□□□□□ -2.32
SMC4-220ENST00000488017 TRAV10A0A0B4J240 114 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 IGKV3D-7A0A0C4DH55 119 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 A0A0J9YY99 117 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 TRBV30A0A0K0K1B3 111 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 LCE6AA0A183 80 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 A0A1B0GWA3 101 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 IGIPA6NJ69 53 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 CEBPZOSA8MTT3 80 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 H3BVH4 76 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 J3QLW9 94 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 NDUFC1O43677 76 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 IGHV3-30P01768 117 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 PRH1P02810 166 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 SAA1P0DJI8 122 aaPredicted RBP0.54□□□□□ -2.32
SMC4-220ENST00000488017 IGHV3-30-5P0DP03 117 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 CD24P25063 80 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 CKS2P33552 79 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 IFI27P40305 119 aaPredicted RBP0.54□□□□□ -2.32
SMC4-220ENST00000488017 SLC48A1Q6P1K1 146 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 CSAG1Q6PB30 78 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 SFTA2Q6UW10 78 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 LYZL1Q6UWQ5 148 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 MIR17HGQ75NE6 70 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 COPS9Q8WXC6 57 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 SPTSSAQ969W0 71 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 Q96M85 177 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 LYSTQ99698 3801 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 WFDC6Q9BQY6 131 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 CYP4F30PQ9H0H9 118 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 OSTCQ9NRP0 149 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 TMEM14BQ9NUH8 114 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 LINC00846Q9NV44 126 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 SNURFQ9Y675 71 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 LHFPL6Q9Y693 200 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 PTPRQQ9UMZ3 2332 aa0.54□□□□□ -2.32
SMC4-220ENST00000488017 CEP350Q5VT06 3117 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 SPEGQ15772 3267 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 VPS13DQ5THJ4 4388 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 CFAP47Q6ZTR5 3102 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 IGKV1D-42A0A075B6H8 117 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 TRAV23DV6A0A075B6W5 121 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 A0A087WSZ3 146 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 LOC107984156A0A0G2JMH3 177 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 TRBV10-3A0A0K0K1G6 114 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 TMEM14DPA8MWL7 114 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 SPINK4O60575 86 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 ERC2-IT1O76042 136 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 MGST1P10620 155 aaKnown RBP0.53□□□□□ -2.32
SMC4-220ENST00000488017 S100A4P26447 101 aaKnown RBP0.53□□□□□ -2.32
SMC4-220ENST00000488017 SPINK7P58062 85 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 FXYD6P3P58550 94 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 CNBPP62633 177 aaKnown RBP0.53□□□□□ -2.32
SMC4-220ENST00000488017 PLGLAQ15195 96 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 ATXN8Q156A1 80 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 NNATQ16517 81 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 SPANXN1Q5VSR9 72 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 C2orf82Q6UX34 121 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 Q6ZQT0 140 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 ARL17AQ8IVW1 177 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 SPTSSBQ8NFR3 76 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 FDCSPQ8NFU4 85 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 Q8TAT8 98 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 DYNLRB2Q8TF09 96 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 NDUFA4L2Q9NRX3 87 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 PRO1854Q9UHT4 67 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms