RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 IBA57-AS1B1ANH7 110 aa12.46□□□□□ -0.42
VIM-206ENST00000487938 FAM222AQ5U5X8 452 aa12.46□□□□□ -0.42
VIM-206ENST00000487938 LINC00612Q8N6U2 182 aa12.46□□□□□ -0.42
VIM-206ENST00000487938 DEFB4AO15263 64 aa12.45□□□□□ -0.42
VIM-206ENST00000487938 LY6G6DO95868 133 aa12.45□□□□□ -0.42
VIM-206ENST00000487938 Q6Q795 121 aa12.45□□□□□ -0.42
VIM-206ENST00000487938 PAX4O43316 350 aa12.44□□□□□ -0.42
VIM-206ENST00000487938 A0A087WYN8 130 aa12.44□□□□□ -0.42
VIM-206ENST00000487938 SS18Q15532 418 aa12.44□□□□□ -0.42
VIM-206ENST00000487938 MRPL23Q16540 153 aaKnown RBP12.43□□□□□ -0.42
VIM-206ENST00000487938 PRO0255Q9UI72 69 aa12.43□□□□□ -0.42
VIM-206ENST00000487938 VWFP04275 2813 aa12.43□□□□□ -0.42
VIM-206ENST00000487938 OR13C6PQ8NH95 151 aa12.42□□□□□ -0.42
VIM-206ENST00000487938 ATP5G1P05496 136 aa12.42□□□□□ -0.42
VIM-206ENST00000487938 A0A1B0GUV1 79 aa12.41□□□□□ -0.42
VIM-206ENST00000487938 MALP21145 153 aa12.41□□□□□ -0.42
VIM-206ENST00000487938 DEFB135Q30KP9 77 aa12.4□□□□□ -0.42
VIM-206ENST00000487938 Q8N3U1 123 aa12.4□□□□□ -0.42
VIM-206ENST00000487938 SMCR5Q8TEV8 140 aa12.4□□□□□ -0.42
VIM-206ENST00000487938 SMIM9A6NGZ8 99 aa12.39□□□□□ -0.43
VIM-206ENST00000487938 ACYP1P07311 99 aa12.39□□□□□ -0.43
VIM-206ENST00000487938 LINC00269Q8N2A0 174 aa12.39□□□□□ -0.43
VIM-206ENST00000487938 HECTD1Q9ULT8 2610 aa12.39□□□□□ -0.43
VIM-206ENST00000487938 IGLV10-54A0A075B6I4 117 aa12.37□□□□□ -0.43
VIM-206ENST00000487938 DNAL4O96015 105 aa12.37□□□□□ -0.43
VIM-206ENST00000487938 C9orf129Q5T035 196 aaKnown RBP12.37□□□□□ -0.43
VIM-206ENST00000487938 Q8IZM0 81 aa12.37□□□□□ -0.43
VIM-206ENST00000487938 CCDC179H3BU77 68 aa12.36□□□□□ -0.43
VIM-206ENST00000487938 B5MCH6 92 aa12.36□□□□□ -0.43
VIM-206ENST00000487938 PRR3P79522 188 aaKnown RBP12.36□□□□□ -0.43
VIM-206ENST00000487938 GAGE2AQ6NT46 116 aa12.36□□□□□ -0.43
VIM-206ENST00000487938 H0YGX0 51 aa12.35□□□□□ -0.43
VIM-206ENST00000487938 LECT2O14960 151 aa12.35□□□□□ -0.43
VIM-206ENST00000487938 NOTCH2Q04721 2471 aa12.34□□□□□ -0.43
VIM-206ENST00000487938 TRBV7-7A0A0K0K1E9 115 aa12.34□□□□□ -0.43
VIM-206ENST00000487938 LYRM9A8MSI8 78 aa12.34□□□□□ -0.43
VIM-206ENST00000487938 INAFM1C9JVW0 142 aa12.34□□□□□ -0.43
VIM-206ENST00000487938 ANGP03950 147 aaKnown RBP12.34□□□□□ -0.43
VIM-206ENST00000487938 SLPIP03973 132 aa12.34□□□□□ -0.43
VIM-206ENST00000487938 C9orf66Q5T8R8 295 aa12.34□□□□□ -0.43
VIM-206ENST00000487938 IGHV4-28A0A0C4DH34 117 aa12.33□□□□□ -0.44
VIM-206ENST00000487938 INAFM2P0DMQ5 153 aa12.32□□□□□ -0.44
VIM-206ENST00000487938 CHCHD10Q8WYQ3 142 aaPredicted RBP12.32□□□□□ -0.44
VIM-206ENST00000487938 DAD1P61803 113 aa12.31□□□□□ -0.44
VIM-206ENST00000487938 KIAA0087Q14695 138 aa12.31□□□□□ -0.44
VIM-206ENST00000487938 C9orf116Q5BN46 136 aaPredicted RBP12.31□□□□□ -0.44
VIM-206ENST00000487938 CD164L2Q6UWJ8 174 aa12.31□□□□□ -0.44
VIM-206ENST00000487938 CELA1Q9UNI1 258 aa12.31□□□□□ -0.44
VIM-206ENST00000487938 REG3AQ06141 175 aa12.31□□□□□ -0.44
VIM-206ENST00000487938 C14orf132Q9NPU4 83 aa12.31□□□□□ -0.44
VIM-206ENST00000487938 SS18L2Q9UHA2 77 aa12.31□□□□□ -0.44
VIM-206ENST00000487938 LINC00643Q86TS7 51 aa12.3□□□□□ -0.44
VIM-206ENST00000487938 CFAP161Q6P656 301 aa12.3□□□□□ -0.44
VIM-206ENST00000487938 HTN3P15516 51 aa12.29□□□□□ -0.44
VIM-206ENST00000487938 LINC01561Q8N1V8 128 aa12.28□□□□□ -0.44
VIM-206ENST00000487938 OTOGQ6ZRI0 2925 aa12.28□□□□□ -0.44
VIM-206ENST00000487938 TENM1Q9UKZ4 2725 aa12.28□□□□□ -0.44
VIM-206ENST00000487938 NCR3O14931 201 aa12.27□□□□□ -0.44
VIM-206ENST00000487938 APOC4P55056 127 aa12.27□□□□□ -0.44
VIM-206ENST00000487938 SDIM1Q6ZPB5 146 aa12.27□□□□□ -0.44
VIM-206ENST00000487938 FAM236AA0A1B0GUQ0 79 aa12.27□□□□□ -0.45
VIM-206ENST00000487938 FAM236BA0A1B0GV22 79 aa12.27□□□□□ -0.45
VIM-206ENST00000487938 NANOS2P60321 138 aaKnown RBP12.27□□□□□ -0.45
VIM-206ENST00000487938 IMUPQ9GZP8 106 aa12.25□□□□□ -0.45
VIM-206ENST00000487938 Q8NAQ8 132 aa12.25□□□□□ -0.45
VIM-206ENST00000487938 LINC00526Q96FQ7 95 aa12.25□□□□□ -0.45
VIM-206ENST00000487938 TRRAPQ9Y4A5 3859 aa12.24□□□□□ -0.45
VIM-206ENST00000487938 C6orf223Q8N319 242 aa12.24□□□□□ -0.45
VIM-206ENST00000487938 COX17Q14061 63 aa12.23□□□□□ -0.45
VIM-206ENST00000487938 Q8NDZ9 215 aa12.23□□□□□ -0.45
VIM-206ENST00000487938 OBSCN-AS1Q96MR7 158 aa12.23□□□□□ -0.45
VIM-206ENST00000487938 ORMDL1Q9P0S3 153 aa12.23□□□□□ -0.45
VIM-206ENST00000487938 KLK5Q9Y337 293 aaPredicted RBP12.22□□□□□ -0.45
VIM-206ENST00000487938 CXCL5P42830 114 aa12.22□□□□□ -0.45
VIM-206ENST00000487938 C10orf25Q5T742 122 aa12.22□□□□□ -0.45
VIM-206ENST00000487938 NSD1Q96L73 2696 aaPredicted RBP12.21□□□□□ -0.45
VIM-206ENST00000487938 UNQ6190/PRO20217Q6UXQ8 127 aa12.21□□□□□ -0.46
VIM-206ENST00000487938 NDUFC2O95298 119 aa12.2□□□□□ -0.46
VIM-206ENST00000487938 SPART-AS1P0CW21 52 aa12.2□□□□□ -0.46
VIM-206ENST00000487938 MIFP14174 115 aa12.2□□□□□ -0.46
VIM-206ENST00000487938 TMEM126AQ9H061 195 aa12.2□□□□□ -0.46
VIM-206ENST00000487938 Q8N814 137 aa12.2□□□□□ -0.46
VIM-206ENST00000487938 KLK12Q9UKR0 248 aa12.2□□□□□ -0.46
VIM-206ENST00000487938 LINC00846Q9NV44 126 aa12.19□□□□□ -0.46
VIM-206ENST00000487938 SPAG11BQ08648 103 aa12.17□□□□□ -0.46
VIM-206ENST00000487938 LELP1Q5T871 98 aa12.17□□□□□ -0.46
VIM-206ENST00000487938 C3orf56Q8N813 242 aa12.17□□□□□ -0.46
VIM-206ENST00000487938 IGHV4-30-4P0DP06 118 aa12.17□□□□□ -0.46
VIM-206ENST00000487938 C6orf99Q4VX62 202 aa12.16□□□□□ -0.46
VIM-206ENST00000487938 ATRQ13535 2644 aa12.16□□□□□ -0.46
VIM-206ENST00000487938 IGKV3D-7A0A0C4DH55 119 aa12.16□□□□□ -0.46
VIM-206ENST00000487938 S100A7L2Q5SY68 101 aa12.16□□□□□ -0.46
VIM-206ENST00000487938 LINC00167Q96N53 147 aa12.16□□□□□ -0.46
VIM-206ENST00000487938 CYSRT1A8MQ03 144 aa12.15□□□□□ -0.46
VIM-206ENST00000487938 ENHOQ6UWT2 76 aa12.14□□□□□ -0.47
VIM-206ENST00000487938 HIVEP1P15822 2718 aa12.14□□□□□ -0.47
VIM-206ENST00000487938 TEP1Q99973 2627 aaKnown RBP12.12□□□□□ -0.47
VIM-206ENST00000487938 A0A1B0GX51 115 aa12.12□□□□□ -0.47
VIM-206ENST00000487938 TMEM256-PLSCR3K7ERE1 68 aa12.11□□□□□ -0.47
VIM-206ENST00000487938 LYPD5Q6UWN5 251 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms