RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 C6orf99Q4VX62 202 aa4.4□□□□□ -1.7
VPS13D-209ENST00000487188 CLPSL2Q6UWE3 100 aa4.4□□□□□ -1.7
VPS13D-209ENST00000487188 FAM19A3Q7Z5A8 133 aa4.4□□□□□ -1.7
VPS13D-209ENST00000487188 MIFP14174 115 aa4.4□□□□□ -1.7
VPS13D-209ENST00000487188 LINC01547P58512 204 aaPredicted RBP4.4□□□□□ -1.7
VPS13D-209ENST00000487188 A0A1W2PPR1 153 aa4.4□□□□□ -1.71
VPS13D-209ENST00000487188 BCE1O60756 84 aa4.4□□□□□ -1.71
VPS13D-209ENST00000487188 TRAV10A0A0B4J240 114 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 F8WDY8 70 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 ZNF561-AS1K7EIQ3 104 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 MSMBP08118 114 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 SEC61GP60059 68 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 PRR3P79522 188 aaKnown RBP4.39□□□□□ -1.71
VPS13D-209ENST00000487188 C11orf44Q8N8P7 122 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 LINC00474Q9P2X8 69 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 KLKP1Q107X0 134 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 Q6ZVQ6 151 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 Q8N3U1 123 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 CCDC168Q8NDH2 2452 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 LOC100131303A0A0U1RQF7 123 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 PLA2G2AP14555 144 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 CCL19Q99731 98 aa4.39□□□□□ -1.71
VPS13D-209ENST00000487188 COL12A1Q99715 3063 aa4.38□□□□□ -1.71
VPS13D-209ENST00000487188 DEFB112Q30KQ8 113 aa4.38□□□□□ -1.71
VPS13D-209ENST00000487188 NREPQ16612 68 aa4.38□□□□□ -1.71
VPS13D-209ENST00000487188 SONP18583 2426 aaKnown RBP4.38□□□□□ -1.71
VPS13D-209ENST00000487188 IGLV4-60A0A075B6I1 120 aa4.38□□□□□ -1.71
VPS13D-209ENST00000487188 A0A087WZ39 114 aa4.38□□□□□ -1.71
VPS13D-209ENST00000487188 PDE6GP18545 87 aa4.38□□□□□ -1.71
VPS13D-209ENST00000487188 LINC00482Q8N8I6 264 aa4.38□□□□□ -1.71
VPS13D-209ENST00000487188 FUSP35637 526 aaKnown RBP eCLIP4.38□□□□□ -1.71
VPS13D-209ENST00000487188 LY6G6DO95868 133 aa4.37□□□□□ -1.71
VPS13D-209ENST00000487188 DAD1P61803 113 aa4.37□□□□□ -1.71
VPS13D-209ENST00000487188 LRBAP50851 2863 aa4.37□□□□□ -1.71
VPS13D-209ENST00000487188 IGHV3OR16-9A0A0B4J2B5 98 aa4.37□□□□□ -1.71
VPS13D-209ENST00000487188 Q6ZQT0 140 aa4.37□□□□□ -1.71
VPS13D-209ENST00000487188 FP248Q71RG6 208 aaPredicted RBP4.37□□□□□ -1.71
VPS13D-209ENST00000487188 HELZ2Q9BYK8 2649 aaKnown RBP4.37□□□□□ -1.71
VPS13D-209ENST00000487188 GNLYP22749 145 aa4.37□□□□□ -1.71
VPS13D-209ENST00000487188 CSMD1Q96PZ7 3565 aa4.36□□□□□ -1.71
VPS13D-209ENST00000487188 TRBV6-8A0A0A6YYG3 113 aa4.36□□□□□ -1.71
VPS13D-209ENST00000487188 B4DSR2 109 aa4.36□□□□□ -1.71
VPS13D-209ENST00000487188 LYPD5Q6UWN5 251 aa4.36□□□□□ -1.71
VPS13D-209ENST00000487188 Q6ZQY7 126 aa4.36□□□□□ -1.71
VPS13D-209ENST00000487188 TMEM254Q8TBM7 123 aa4.36□□□□□ -1.71
VPS13D-209ENST00000487188 TM2D3Q9BRN9 247 aa4.36□□□□□ -1.71
VPS13D-209ENST00000487188 BAHCC1Q9P281 2608 aa4.36□□□□□ -1.71
VPS13D-209ENST00000487188 LINC00959A0A1B0GUT2 108 aa4.36□□□□□ -1.71
VPS13D-209ENST00000487188 IGHV4-30-2A0A087WSY4 118 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 BPY2O14599 106 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 CXCL6P80162 114 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 C18orf65Q6ZTR6 163 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 LINC00167Q96N53 147 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 ASH1LQ9NR48 2969 aaKnown RBP4.35□□□□□ -1.71
VPS13D-209ENST00000487188 Q8IZM0 81 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 C1orf158Q8N1D5 194 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 A0A1W2PRX2 142 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 PRYO14603 147 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 DEFB130BP0DP73 79 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 DEFB130AP0DP74 79 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 LINC00575Q6W349 94 aa4.35□□□□□ -1.71
VPS13D-209ENST00000487188 HIVEP3Q5T1R4 2406 aa4.34□□□□□ -1.71
VPS13D-209ENST00000487188 FLNCQ14315 2725 aa4.34□□□□□ -1.71
VPS13D-209ENST00000487188 IGLV10-54A0A075B6I4 117 aa4.34□□□□□ -1.71
VPS13D-209ENST00000487188 C16orf74Q96GX8 76 aa4.34□□□□□ -1.71
VPS13D-209ENST00000487188 ABCA2Q9BZC7 2435 aa4.34□□□□□ -1.71
VPS13D-209ENST00000487188 LOC110117498A0A087WWA1 95 aa4.34□□□□□ -1.71
VPS13D-209ENST00000487188 A8MTW9 85 aa4.34□□□□□ -1.71
VPS13D-209ENST00000487188 H3BQ85 93 aa4.34□□□□□ -1.71
VPS13D-209ENST00000487188 C19orf84I3L1E1 186 aa4.34□□□□□ -1.71
VPS13D-209ENST00000487188 ESRGQ1W209 222 aa4.34□□□□□ -1.71
VPS13D-209ENST00000487188 A0A096LPF7 62 aa4.34□□□□□ -1.72
VPS13D-209ENST00000487188 EPM2AB3EWF7 344 aa4.33□□□□□ -1.72
VPS13D-209ENST00000487188 DEFB114Q30KQ6 69 aa4.33□□□□□ -1.72
VPS13D-209ENST00000487188 C6orf223Q8N319 242 aa4.33□□□□□ -1.72
VPS13D-209ENST00000487188 M0R2N4 97 aa4.33□□□□□ -1.72
VPS13D-209ENST00000487188 AVPP01185 164 aa4.33□□□□□ -1.72
VPS13D-209ENST00000487188 C9orf116Q5BN46 136 aaPredicted RBP4.33□□□□□ -1.72
VPS13D-209ENST00000487188 LINC00269Q8N2A0 174 aa4.33□□□□□ -1.72
VPS13D-209ENST00000487188 MUC7Q8TAX7 377 aa4.33□□□□□ -1.72
VPS13D-209ENST00000487188 DIRC1Q969H9 104 aa4.33□□□□□ -1.72
VPS13D-209ENST00000487188 C16orf95Q9H693 158 aa4.33□□□□□ -1.72
VPS13D-209ENST00000487188 ODF3L2Q3SX64 289 aa4.32□□□□□ -1.72
VPS13D-209ENST00000487188 LRRK2Q5S007 2527 aa4.32□□□□□ -1.72
VPS13D-209ENST00000487188 UTP20O75691 2785 aaKnown RBP4.32□□□□□ -1.72
VPS13D-209ENST00000487188 ANGP03950 147 aaKnown RBP4.32□□□□□ -1.72
VPS13D-209ENST00000487188 GYPEP15421 78 aa4.32□□□□□ -1.72
VPS13D-209ENST00000487188 MYO9AB2RTY4 2548 aa4.32□□□□□ -1.72
VPS13D-209ENST00000487188 AKAP9Q99996 3911 aa4.32□□□□□ -1.72
VPS13D-209ENST00000487188 A0A096LNT2 108 aa4.32□□□□□ -1.72
VPS13D-209ENST00000487188 NANOS2P60321 138 aaKnown RBP4.32□□□□□ -1.72
VPS13D-209ENST00000487188 COX17Q14061 63 aa4.31□□□□□ -1.72
VPS13D-209ENST00000487188 Q8N9L7 120 aa4.31□□□□□ -1.72
VPS13D-209ENST00000487188 SPATA3Q8NHX4 192 aa4.31□□□□□ -1.72
VPS13D-209ENST00000487188 MAPK1IP1LQ8NDC0 245 aa4.31□□□□□ -1.72
VPS13D-209ENST00000487188 TRBV7-4A0A0J9YYF1 115 aa4.31□□□□□ -1.72
VPS13D-209ENST00000487188 LRCOL1A6NCL2 159 aa4.31□□□□□ -1.72
VPS13D-209ENST00000487188 COX7BP24311 80 aa4.31□□□□□ -1.72
VPS13D-209ENST00000487188 SPAG11BQ08648 103 aa4.31□□□□□ -1.72
VPS13D-209ENST00000487188 ZNF702PQ9H963 129 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms