RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 TEX43Q6ZNM6 134 aa4.38□□□□□ -1.71
VPS50-218ENST00000485994 CBLN2Q8IUK8 224 aa4.38□□□□□ -1.71
VPS50-218ENST00000485994 TOMM6Q96B49 74 aa4.38□□□□□ -1.71
VPS50-218ENST00000485994 LINC00526Q96FQ7 95 aa4.38□□□□□ -1.71
VPS50-218ENST00000485994 TIMM17AQ99595 171 aa4.38□□□□□ -1.71
VPS50-218ENST00000485994 VCX2Q9H322 139 aa4.38□□□□□ -1.71
VPS50-218ENST00000485994 IGKV2-24A0A0C4DH68 120 aa4.37□□□□□ -1.71
VPS50-218ENST00000485994 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.37□□□□□ -1.71
VPS50-218ENST00000485994 NDUFA1O15239 70 aa4.37□□□□□ -1.71
VPS50-218ENST00000485994 MT-ND6P03923 174 aa4.37□□□□□ -1.71
VPS50-218ENST00000485994 SPAG11BQ08648 103 aa4.37□□□□□ -1.71
VPS50-218ENST00000485994 SRSF9Q13242 221 aaKnown RBP eCLIP4.37□□□□□ -1.71
VPS50-218ENST00000485994 ALKBH7Q9BT30 221 aaPredicted RBP4.37□□□□□ -1.71
VPS50-218ENST00000485994 TRBV30A0A0K0K1B3 111 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 COLCA2A8K830 154 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 SPINK6Q6UWN8 80 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 Q6ZN92 141 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 Q6ZRP5 223 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 LINC00173Q6ZV60 143 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 ERASQ7Z444 233 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 ORAOV1Q8WV07 137 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 C2orf88Q9BSF0 95 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 SMCO4Q9NRQ5 59 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 TNXBP22105 4242 aa4.36□□□□□ -1.71
VPS50-218ENST00000485994 A0A1W2PNN7 141 aa4.35□□□□□ -1.71
VPS50-218ENST00000485994 SCO1O75880 301 aa4.35□□□□□ -1.71
VPS50-218ENST00000485994 HERVK_113P63121 156 aa4.35□□□□□ -1.71
VPS50-218ENST00000485994 PRR3P79522 188 aaKnown RBP4.35□□□□□ -1.71
VPS50-218ENST00000485994 GAGE2BQ13066 116 aa4.35□□□□□ -1.71
VPS50-218ENST00000485994 UNQ6190/PRO20217Q6UXQ8 127 aa4.35□□□□□ -1.71
VPS50-218ENST00000485994 URB1-AS1Q96HZ7 61 aa4.35□□□□□ -1.71
VPS50-218ENST00000485994 MT1HL1P0DM35 61 aa4.34□□□□□ -1.71
VPS50-218ENST00000485994 FABP9Q0Z7S8 132 aa4.34□□□□□ -1.71
VPS50-218ENST00000485994 C9orf116Q5BN46 136 aaPredicted RBP4.34□□□□□ -1.71
VPS50-218ENST00000485994 C10orf25Q5T742 122 aa4.34□□□□□ -1.71
VPS50-218ENST00000485994 Q8IZM0 81 aa4.34□□□□□ -1.71
VPS50-218ENST00000485994 LINC01600Q96MT4 127 aa4.34□□□□□ -1.71
VPS50-218ENST00000485994 C6orf48Q9UBA6 75 aa4.34□□□□□ -1.71
VPS50-218ENST00000485994 TRAPPC1Q9Y5R8 145 aa4.34□□□□□ -1.71
VPS50-218ENST00000485994 IGLV5-45A0A087WSX0 123 aa4.33□□□□□ -1.72
VPS50-218ENST00000485994 A0A0J9YXV3 536 aa4.33□□□□□ -1.72
VPS50-218ENST00000485994 TINCRA0A1B0GVN0 87 aa4.33□□□□□ -1.72
VPS50-218ENST00000485994 NDUFC2-KCTD14E9PQ53 114 aa4.33□□□□□ -1.72
VPS50-218ENST00000485994 C6orf226Q5I0X4 101 aa4.33□□□□□ -1.72
VPS50-218ENST00000485994 SCGB3A1Q96QR1 104 aa4.33□□□□□ -1.72
VPS50-218ENST00000485994 HMCN2Q8NDA2 5059 aa4.32□□□□□ -1.72
VPS50-218ENST00000485994 CXCL5P42830 114 aa4.32□□□□□ -1.72
VPS50-218ENST00000485994 KRTAP10-8P60410 259 aa4.32□□□□□ -1.72
VPS50-218ENST00000485994 RPL18AQ02543 176 aaKnown RBP4.32□□□□□ -1.72
VPS50-218ENST00000485994 ZC2HC1BQ5TFG8 222 aa4.32□□□□□ -1.72
VPS50-218ENST00000485994 C18orf32Q8TCD1 76 aa4.32□□□□□ -1.72
VPS50-218ENST00000485994 PACRGQ96M98 296 aaPredicted RBP4.32□□□□□ -1.72
VPS50-218ENST00000485994 CDKN2A-AS1Q9UH64 79 aa4.32□□□□□ -1.72
VPS50-218ENST00000485994 A0A096LNJ9 63 aa4.31□□□□□ -1.72
VPS50-218ENST00000485994 ATP6V1G1O75348 118 aa4.31□□□□□ -1.72
VPS50-218ENST00000485994 TRGC2P03986 189 aa4.31□□□□□ -1.72
VPS50-218ENST00000485994 PRSS2P07478 247 aa4.31□□□□□ -1.72
VPS50-218ENST00000485994 LINC00614P0C842 121 aa4.31□□□□□ -1.72
VPS50-218ENST00000485994 PDZD11Q5EBL8 140 aa4.31□□□□□ -1.72
VPS50-218ENST00000485994 REG3GQ6UW15 175 aa4.31□□□□□ -1.72
VPS50-218ENST00000485994 FA2HQ7L5A8 372 aa4.31□□□□□ -1.72
VPS50-218ENST00000485994 CST9LQ9H4G1 147 aa4.31□□□□□ -1.72
VPS50-218ENST00000485994 GEMIN7Q9H840 131 aaKnown RBP4.31□□□□□ -1.72
VPS50-218ENST00000485994 PSORS1C2Q9UIG4 136 aa4.31□□□□□ -1.72
VPS50-218ENST00000485994 F8VRH5 84 aa4.3□□□□□ -1.72
VPS50-218ENST00000485994 S100A1P23297 94 aa4.3□□□□□ -1.72
VPS50-218ENST00000485994 RAB5BP61020 215 aa4.3□□□□□ -1.72
VPS50-218ENST00000485994 CKS1BP61024 79 aa4.3□□□□□ -1.72
VPS50-218ENST00000485994 PMVKQ15126 192 aa4.3□□□□□ -1.72
VPS50-218ENST00000485994 C2orf82Q6UX34 121 aa4.3□□□□□ -1.72
VPS50-218ENST00000485994 PHF5AQ7RTV0 110 aaKnown RBP4.3□□□□□ -1.72
VPS50-218ENST00000485994 KRTAP7-1Q8IUC3 87 aa4.3□□□□□ -1.72
VPS50-218ENST00000485994 SMIM1B2RUZ4 78 aa4.29□□□□□ -1.72
VPS50-218ENST00000485994 GAGE2EQ4V326 116 aa4.29□□□□□ -1.72
VPS50-218ENST00000485994 C9orf129Q5T035 196 aaKnown RBP4.29□□□□□ -1.72
VPS50-218ENST00000485994 GAGE2DQ9UEU5 116 aa4.29□□□□□ -1.72
VPS50-218ENST00000485994 FAM168BA1KXE4 195 aa4.28□□□□□ -1.72
VPS50-218ENST00000485994 NUPR1O60356 82 aa4.28□□□□□ -1.72
VPS50-218ENST00000485994 IGLV7-43P04211 117 aa4.28□□□□□ -1.72
VPS50-218ENST00000485994 IGLC3P0DOY3 106 aa4.28□□□□□ -1.72
VPS50-218ENST00000485994 LINC00469Q8N7U9 141 aa4.28□□□□□ -1.72
VPS50-218ENST00000485994 COX7B2Q8TF08 81 aa4.28□□□□□ -1.72
VPS50-218ENST00000485994 TOMM7Q9P0U1 55 aa4.28□□□□□ -1.72
VPS50-218ENST00000485994 TP73-AS1Q9UF72 201 aa4.28□□□□□ -1.72
VPS50-218ENST00000485994 PLA2G2DQ9UNK4 145 aa4.28□□□□□ -1.72
VPS50-218ENST00000485994 IGLV5-39A0A0G2JS06 123 aa4.27□□□□□ -1.73
VPS50-218ENST00000485994 H3BRM9 83 aa4.27□□□□□ -1.73
VPS50-218ENST00000485994 ATP5LO75964 103 aa4.27□□□□□ -1.73
VPS50-218ENST00000485994 HBDP02042 147 aa4.27□□□□□ -1.73
VPS50-218ENST00000485994 LBHQ53QV2 105 aaPredicted RBP4.27□□□□□ -1.73
VPS50-218ENST00000485994 C1orf137Q5JT78 98 aa4.27□□□□□ -1.73
VPS50-218ENST00000485994 KRTAP11-1Q8IUC1 163 aa4.27□□□□□ -1.73
VPS50-218ENST00000485994 KRTAP3-1Q9BYR8 98 aa4.27□□□□□ -1.73
VPS50-218ENST00000485994 M0QXV9 152 aa4.26□□□□□ -1.73
VPS50-218ENST00000485994 PMCHL1Q16048 86 aa4.26□□□□□ -1.73
VPS50-218ENST00000485994 FAM19A5Q7Z5A7 132 aaPredicted RBP4.26□□□□□ -1.73
VPS50-218ENST00000485994 DIRC1Q969H9 104 aa4.26□□□□□ -1.73
VPS50-218ENST00000485994 CHCHD1Q96BP2 118 aaKnown RBP4.26□□□□□ -1.73
VPS50-218ENST00000485994 C22orf24Q9Y442 160 aa4.26□□□□□ -1.73
VPS50-218ENST00000485994 IGLV5-37A0A075B6J1 123 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms