RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 YPEL4Q96NS1 127 aa9.78□□□□□ -0.84
CCDC28B-205ENST00000483009 CST9LQ9H4G1 147 aa9.78□□□□□ -0.84
CCDC28B-205ENST00000483009 TINCRA0A1B0GVN0 87 aa9.77□□□□□ -0.85
CCDC28B-205ENST00000483009 LINC00614P0C842 121 aa9.77□□□□□ -0.85
CCDC28B-205ENST00000483009 PMVKQ15126 192 aa9.77□□□□□ -0.85
CCDC28B-205ENST00000483009 IGLV5-45A0A087WSX0 123 aa9.76□□□□□ -0.85
CCDC28B-205ENST00000483009 A0A096LNJ9 63 aa9.76□□□□□ -0.85
CCDC28B-205ENST00000483009 CKS1BP61024 79 aa9.76□□□□□ -0.85
CCDC28B-205ENST00000483009 GAGE2EQ4V326 116 aa9.76□□□□□ -0.85
CCDC28B-205ENST00000483009 C6orf226Q5I0X4 101 aa9.76□□□□□ -0.85
CCDC28B-205ENST00000483009 GAGE2DQ9UEU5 116 aa9.76□□□□□ -0.85
CCDC28B-205ENST00000483009 NDUFC2-KCTD14E9PQ53 114 aa9.75□□□□□ -0.85
CCDC28B-205ENST00000483009 HBDP02042 147 aa9.75□□□□□ -0.85
CCDC28B-205ENST00000483009 RAB5BP61020 215 aa9.75□□□□□ -0.85
CCDC28B-205ENST00000483009 SMIM1B2RUZ4 78 aa9.74□□□□□ -0.85
CCDC28B-205ENST00000483009 CXCL5P42830 114 aa9.73□□□□□ -0.85
CCDC28B-205ENST00000483009 PDZD11Q5EBL8 140 aa9.73□□□□□ -0.85
CCDC28B-205ENST00000483009 PHF5AQ7RTV0 110 aaKnown RBP9.73□□□□□ -0.85
CCDC28B-205ENST00000483009 CBLN2Q8IUK8 224 aa9.73□□□□□ -0.85
CCDC28B-205ENST00000483009 FAM168BA1KXE4 195 aa9.72□□□□□ -0.85
CCDC28B-205ENST00000483009 PMCHL1Q16048 86 aa9.72□□□□□ -0.85
CCDC28B-205ENST00000483009 F8VRH5 84 aa9.71□□□□□ -0.86
CCDC28B-205ENST00000483009 FAM19A5Q7Z5A7 132 aaPredicted RBP9.71□□□□□ -0.86
CCDC28B-205ENST00000483009 H3BRM9 83 aa9.7□□□□□ -0.86
CCDC28B-205ENST00000483009 ATP5LO75964 103 aa9.7□□□□□ -0.86
CCDC28B-205ENST00000483009 SPINK8P0C7L1 97 aa9.7□□□□□ -0.86
CCDC28B-205ENST00000483009 IGLC3P0DOY3 106 aa9.7□□□□□ -0.86
CCDC28B-205ENST00000483009 NDUFA6P56556 154 aa9.7□□□□□ -0.86
CCDC28B-205ENST00000483009 SLC7A5P1Q8MH63 180 aa9.7□□□□□ -0.86
CCDC28B-205ENST00000483009 COX7B2Q8TF08 81 aa9.7□□□□□ -0.86
CCDC28B-205ENST00000483009 C9orf129Q5T035 196 aaKnown RBP9.69□□□□□ -0.86
CCDC28B-205ENST00000483009 SPINK6Q6UWN8 80 aa9.69□□□□□ -0.86
CCDC28B-205ENST00000483009 PSORS1C2Q9UIG4 136 aa9.69□□□□□ -0.86
CCDC28B-205ENST00000483009 KRTAP7-1Q8IUC3 87 aa9.68□□□□□ -0.86
CCDC28B-205ENST00000483009 CHCHD1Q96BP2 118 aaKnown RBP9.68□□□□□ -0.86
CCDC28B-205ENST00000483009 M0QXV9 152 aa9.67□□□□□ -0.86
CCDC28B-205ENST00000483009 MT1HL1P0DM35 61 aa9.67□□□□□ -0.86
CCDC28B-205ENST00000483009 SRSF9Q13242 221 aaKnown RBP eCLIP9.67□□□□□ -0.86
CCDC28B-205ENST00000483009 ZNF22P17026 224 aaPredicted RBP9.66□□□□□ -0.86
CCDC28B-205ENST00000483009 C1orf137Q5JT78 98 aa9.66□□□□□ -0.86
CCDC28B-205ENST00000483009 BAGE3Q86Y29 109 aa9.66□□□□□ -0.86
CCDC28B-205ENST00000483009 IGLV5-39A0A0G2JS06 123 aa9.65□□□□□ -0.86
CCDC28B-205ENST00000483009 XAGE1AQ9HD64 81 aa9.65□□□□□ -0.86
CCDC28B-205ENST00000483009 TRGC2P03986 189 aa9.64□□□□□ -0.87
CCDC28B-205ENST00000483009 REG3GQ6UW15 175 aa9.64□□□□□ -0.87
CCDC28B-205ENST00000483009 KRTAP11-1Q8IUC1 163 aa9.64□□□□□ -0.87
CCDC28B-205ENST00000483009 C11orf86A6NJI1 115 aa9.63□□□□□ -0.87
CCDC28B-205ENST00000483009 UBE2BP63146 152 aa9.63□□□□□ -0.87
CCDC28B-205ENST00000483009 SERTAD4-AS1Q5TG53 156 aa9.63□□□□□ -0.87
CCDC28B-205ENST00000483009 HSBP1O75506 76 aa9.62□□□□□ -0.87
CCDC28B-205ENST00000483009 IFI27L1Q96BM0 104 aa9.62□□□□□ -0.87
CCDC28B-205ENST00000483009 LINC01600Q96MT4 127 aa9.62□□□□□ -0.87
CCDC28B-205ENST00000483009 CHTOPQ9Y3Y2 248 aaKnown RBP9.62□□□□□ -0.87
CCDC28B-205ENST00000483009 IGLV7-43P04211 117 aa9.61□□□□□ -0.87
CCDC28B-205ENST00000483009 TMEM170BQ5T4T1 132 aa9.61□□□□□ -0.87
CCDC28B-205ENST00000483009 TRAV12-1A0A0B4J245 112 aa9.6□□□□□ -0.87
CCDC28B-205ENST00000483009 ODF1Q14990 250 aa9.6□□□□□ -0.87
CCDC28B-205ENST00000483009 C22orf24Q9Y442 160 aa9.6□□□□□ -0.87
CCDC28B-205ENST00000483009 FAM19A2Q8N3H0 131 aa9.59□□□□□ -0.87
CCDC28B-205ENST00000483009 COLCA2A8K830 154 aa9.58□□□□□ -0.88
CCDC28B-205ENST00000483009 LBHQ53QV2 105 aaPredicted RBP9.58□□□□□ -0.88
CCDC28B-205ENST00000483009 TP73-AS1Q9UF72 201 aa9.58□□□□□ -0.88
CCDC28B-205ENST00000483009 TNXBP22105 4242 aa9.57□□□□□ -0.88
CCDC28B-205ENST00000483009 SERF1AO75920 110 aa9.57□□□□□ -0.88
CCDC28B-205ENST00000483009 LINC00310P59036 64 aa9.57□□□□□ -0.88
CCDC28B-205ENST00000483009 SFTA2Q6UW10 78 aa9.56□□□□□ -0.88
CCDC28B-205ENST00000483009 MRPL55Q7Z7F7 128 aaKnown RBP9.56□□□□□ -0.88
CCDC28B-205ENST00000483009 DIRC1Q969H9 104 aa9.56□□□□□ -0.88
CCDC28B-205ENST00000483009 PLA2G2DQ9UNK4 145 aa9.56□□□□□ -0.88
CCDC28B-205ENST00000483009 HMCN2Q8NDA2 5059 aa9.55□□□□□ -0.88
CCDC28B-205ENST00000483009 PFN2P35080 140 aa9.55□□□□□ -0.88
CCDC28B-205ENST00000483009 ERG28Q9UKR5 140 aa9.55□□□□□ -0.88
CCDC28B-205ENST00000483009 TMEM223A0PJW6 202 aa9.54□□□□□ -0.88
CCDC28B-205ENST00000483009 LEPROTL1O95214 131 aa9.54□□□□□ -0.88
CCDC28B-205ENST00000483009 IGLV5-37A0A075B6J1 123 aa9.53□□□□□ -0.88
CCDC28B-205ENST00000483009 H0Y9J4 135 aa9.53□□□□□ -0.88
CCDC28B-205ENST00000483009 NUPR1O60356 82 aa9.53□□□□□ -0.88
CCDC28B-205ENST00000483009 KRTAP10-8P60410 259 aa9.53□□□□□ -0.88
CCDC28B-205ENST00000483009 ZNF625Q96I27 306 aaPredicted RBP9.53□□□□□ -0.88
CCDC28B-205ENST00000483009 COX17Q14061 63 aa9.52□□□□□ -0.89
CCDC28B-205ENST00000483009 H0Y8G0 127 aa9.51□□□□□ -0.89
CCDC28B-205ENST00000483009 NKAPP1Q8N9T2 125 aa9.51□□□□□ -0.89
CCDC28B-205ENST00000483009 LINC00167Q96N53 147 aa9.51□□□□□ -0.89
CCDC28B-205ENST00000483009 SND1-IT1Q9HBX3 110 aa9.51□□□□□ -0.89
CCDC28B-205ENST00000483009 HSPB8Q9UJY1 196 aa9.51□□□□□ -0.89
CCDC28B-205ENST00000483009 SCO1O75880 301 aa9.5□□□□□ -0.89
CCDC28B-205ENST00000483009 GAGE10A6NGK3 116 aa9.49□□□□□ -0.89
CCDC28B-205ENST00000483009 ZNF861PO60384 105 aa9.49□□□□□ -0.89
CCDC28B-205ENST00000483009 RPL37AP8A6NKH3 93 aa9.48□□□□□ -0.89
CCDC28B-205ENST00000483009 FABP4P15090 132 aa9.48□□□□□ -0.89
CCDC28B-205ENST00000483009 BCE1O60756 84 aa9.47□□□□□ -0.89
CCDC28B-205ENST00000483009 VPREB1P12018 145 aa9.47□□□□□ -0.89
CCDC28B-205ENST00000483009 PLNP26678 52 aa9.46□□□□□ -0.9
CCDC28B-205ENST00000483009 LINC00158P58513 81 aa9.46□□□□□ -0.9
CCDC28B-205ENST00000483009 RPL24P83731 157 aaKnown RBP9.46□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST1H2BKO60814 126 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST1H2BJP06899 126 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 KRTAP1-4P0C5Y4 121 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST1H2BOP23527 126 aa9.45□□□□□ -0.9
CCDC28B-205ENST00000483009 HIST1H2BBP33778 126 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms