RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 PDZD2O15018 2839 aa10.66□□□□□ -0.7
C9orf3-218ENST00000482056 KRTAP10-3P60369 221 aa10.66□□□□□ -0.7
C9orf3-218ENST00000482056 C9orf66Q5T8R8 295 aa10.66□□□□□ -0.7
C9orf3-218ENST00000482056 LINC00643Q86TS7 51 aa10.66□□□□□ -0.7
C9orf3-218ENST00000482056 C11orf68Q9H3H3 251 aaKnown RBP10.66□□□□□ -0.7
C9orf3-218ENST00000482056 NBPF19A0A087WUL8 3843 aa10.65□□□□□ -0.7
C9orf3-218ENST00000482056 NIPBLQ6KC79 2804 aaeCLIP10.65□□□□□ -0.71
C9orf3-218ENST00000482056 A0A087WYN8 130 aa10.63□□□□□ -0.71
C9orf3-218ENST00000482056 CFAP161Q6P656 301 aa10.63□□□□□ -0.71
C9orf3-218ENST00000482056 C22orf24Q9Y442 160 aa10.63□□□□□ -0.71
C9orf3-218ENST00000482056 TENM4Q6N022 2769 aa10.63□□□□□ -0.71
C9orf3-218ENST00000482056 CXCL5P42830 114 aa10.63□□□□□ -0.71
C9orf3-218ENST00000482056 CLPSL2Q6UWE3 100 aa10.63□□□□□ -0.71
C9orf3-218ENST00000482056 A0A096LPF7 62 aa10.62□□□□□ -0.71
C9orf3-218ENST00000482056 LY6G6DO95868 133 aa10.62□□□□□ -0.71
C9orf3-218ENST00000482056 APOC4P55056 127 aa10.62□□□□□ -0.71
C9orf3-218ENST00000482056 GAGE2AQ6NT46 116 aa10.62□□□□□ -0.71
C9orf3-218ENST00000482056 CD164L2Q6UWJ8 174 aa10.62□□□□□ -0.71
C9orf3-218ENST00000482056 CUBNO60494 3623 aa10.62□□□□□ -0.71
C9orf3-218ENST00000482056 COX17Q14061 63 aa10.61□□□□□ -0.71
C9orf3-218ENST00000482056 LECT2O14960 151 aa10.6□□□□□ -0.71
C9orf3-218ENST00000482056 DAD1P61803 113 aa10.6□□□□□ -0.71
C9orf3-218ENST00000482056 LINC00269Q8N2A0 174 aa10.6□□□□□ -0.71
C9orf3-218ENST00000482056 HIVEP2P31629 2446 aa10.6□□□□□ -0.71
C9orf3-218ENST00000482056 SDIM1Q6ZPB5 146 aa10.59□□□□□ -0.71
C9orf3-218ENST00000482056 SMR3AQ99954 134 aa10.59□□□□□ -0.71
C9orf3-218ENST00000482056 B5MCH6 92 aa10.59□□□□□ -0.71
C9orf3-218ENST00000482056 DEFB135Q30KP9 77 aa10.59□□□□□ -0.71
C9orf3-218ENST00000482056 SMCR5Q8TEV8 140 aa10.59□□□□□ -0.71
C9orf3-218ENST00000482056 CHCHD10Q8WYQ3 142 aaPredicted RBP10.59□□□□□ -0.71
C9orf3-218ENST00000482056 ANGP03950 147 aaKnown RBP10.58□□□□□ -0.72
C9orf3-218ENST00000482056 ATP5G1P05496 136 aa10.58□□□□□ -0.72
C9orf3-218ENST00000482056 CCDC179H3BU77 68 aa10.57□□□□□ -0.72
C9orf3-218ENST00000482056 NDUFC2O95298 119 aa10.57□□□□□ -0.72
C9orf3-218ENST00000482056 ORMDL1Q9P0S3 153 aa10.57□□□□□ -0.72
C9orf3-218ENST00000482056 REG3AQ06141 175 aa10.57□□□□□ -0.72
C9orf3-218ENST00000482056 IGHV4-28A0A0C4DH34 117 aa10.56□□□□□ -0.72
C9orf3-218ENST00000482056 A0A1B0GX51 115 aa10.56□□□□□ -0.72
C9orf3-218ENST00000482056 KIAA0087Q14695 138 aa10.56□□□□□ -0.72
C9orf3-218ENST00000482056 OBSCN-AS1Q96MR7 158 aa10.56□□□□□ -0.72
C9orf3-218ENST00000482056 ITPR2Q14571 2701 aa10.55□□□□□ -0.72
C9orf3-218ENST00000482056 FAM236AA0A1B0GUQ0 79 aa10.55□□□□□ -0.72
C9orf3-218ENST00000482056 FAM236BA0A1B0GV22 79 aa10.55□□□□□ -0.72
C9orf3-218ENST00000482056 MIFP14174 115 aa10.55□□□□□ -0.72
C9orf3-218ENST00000482056 FN1P02751 2386 aaKnown RBP10.55□□□□□ -0.72
C9orf3-218ENST00000482056 DEFB4AO15263 64 aa10.54□□□□□ -0.72
C9orf3-218ENST00000482056 TMEM126AQ9H061 195 aa10.54□□□□□ -0.72
C9orf3-218ENST00000482056 C14orf132Q9NPU4 83 aa10.54□□□□□ -0.72
C9orf3-218ENST00000482056 IGLV10-54A0A075B6I4 117 aa10.53□□□□□ -0.72
C9orf3-218ENST00000482056 KLK5Q9Y337 293 aaPredicted RBP10.53□□□□□ -0.72
C9orf3-218ENST00000482056 MUC7Q8TAX7 377 aa10.52□□□□□ -0.72
C9orf3-218ENST00000482056 SS18L2Q9UHA2 77 aa10.52□□□□□ -0.72
C9orf3-218ENST00000482056 GCN1Q92616 2671 aaKnown RBP10.52□□□□□ -0.73
C9orf3-218ENST00000482056 UNC79Q9P2D8 2635 aa10.52□□□□□ -0.73
C9orf3-218ENST00000482056 SPART-AS1P0CW21 52 aa10.52□□□□□ -0.73
C9orf3-218ENST00000482056 LELP1Q5T871 98 aa10.51□□□□□ -0.73
C9orf3-218ENST00000482056 LINC00167Q96N53 147 aa10.51□□□□□ -0.73
C9orf3-218ENST00000482056 SLPIP03973 132 aa10.5□□□□□ -0.73
C9orf3-218ENST00000482056 Q8NAQ8 132 aa10.5□□□□□ -0.73
C9orf3-218ENST00000482056 NCR3O14931 201 aa10.5□□□□□ -0.73
C9orf3-218ENST00000482056 JMJD7-PLA2G4BH0Y9G9 81 aa10.49□□□□□ -0.73
C9orf3-218ENST00000482056 C9orf129Q5T035 196 aaKnown RBP10.49□□□□□ -0.73
C9orf3-218ENST00000482056 Q8N814 137 aa10.49□□□□□ -0.73
C9orf3-218ENST00000482056 SPATA3Q8NHX4 192 aa10.49□□□□□ -0.73
C9orf3-218ENST00000482056 TMEM256-PLSCR3K7ERE1 68 aa10.48□□□□□ -0.73
C9orf3-218ENST00000482056 NANOS2P60321 138 aaKnown RBP10.48□□□□□ -0.73
C9orf3-218ENST00000482056 CELA1Q9UNI1 258 aa10.48□□□□□ -0.73
C9orf3-218ENST00000482056 HTN3P15516 51 aa10.48□□□□□ -0.73
C9orf3-218ENST00000482056 PRR3P79522 188 aaKnown RBP10.48□□□□□ -0.73
C9orf3-218ENST00000482056 SPAG11BQ08648 103 aa10.48□□□□□ -0.73
C9orf3-218ENST00000482056 S100A7L2Q5SY68 101 aa10.48□□□□□ -0.73
C9orf3-218ENST00000482056 Q8N3U1 123 aa10.48□□□□□ -0.73
C9orf3-218ENST00000482056 INAFM1C9JVW0 142 aa10.47□□□□□ -0.73
C9orf3-218ENST00000482056 C9orf116Q5BN46 136 aaPredicted RBP10.46□□□□□ -0.73
C9orf3-218ENST00000482056 Q6JHZ5 121 aa10.46□□□□□ -0.73
C9orf3-218ENST00000482056 CCKP06307 115 aa10.45□□□□□ -0.74
C9orf3-218ENST00000482056 FASNP49327 2511 aaKnown RBP10.45□□□□□ -0.74
C9orf3-218ENST00000482056 HELZ2Q9BYK8 2649 aaKnown RBP10.45□□□□□ -0.74
C9orf3-218ENST00000482056 LINC00846Q9NV44 126 aa10.44□□□□□ -0.74
C9orf3-218ENST00000482056 NBEAL2Q6ZNJ1 2754 aa10.44□□□□□ -0.74
C9orf3-218ENST00000482056 A0A0J9YWU9 116 aa10.43□□□□□ -0.74
C9orf3-218ENST00000482056 IGHV4-30-4P0DP06 118 aa10.43□□□□□ -0.74
C9orf3-218ENST00000482056 C6orf99Q4VX62 202 aa10.43□□□□□ -0.74
C9orf3-218ENST00000482056 PRR34Q9NV39 138 aa10.43□□□□□ -0.74
C9orf3-218ENST00000482056 UNQ6190/PRO20217Q6UXQ8 127 aa10.43□□□□□ -0.74
C9orf3-218ENST00000482056 KLK12Q9UKR0 248 aa10.43□□□□□ -0.74
C9orf3-218ENST00000482056 ATOX1O00244 68 aa10.42□□□□□ -0.74
C9orf3-218ENST00000482056 UQCRQO14949 82 aa10.42□□□□□ -0.74
C9orf3-218ENST00000482056 C3orf22Q8N5N4 141 aa10.42□□□□□ -0.74
C9orf3-218ENST00000482056 CYSRT1A8MQ03 144 aa10.41□□□□□ -0.74
C9orf3-218ENST00000482056 C10orf25Q5T742 122 aa10.41□□□□□ -0.74
C9orf3-218ENST00000482056 C6orf223Q8N319 242 aa10.41□□□□□ -0.74
C9orf3-218ENST00000482056 GVQW2A0A096LPI5 108 aaPredicted RBP10.4□□□□□ -0.74
C9orf3-218ENST00000482056 HIST1H4AP62805 103 aaKnown RBP10.4□□□□□ -0.74
C9orf3-218ENST00000482056 LINC00575Q6W349 94 aa10.4□□□□□ -0.74
C9orf3-218ENST00000482056 WFDC9Q8NEX5 89 aa10.4□□□□□ -0.74
C9orf3-218ENST00000482056 C9orf153Q5TBE3 101 aa10.39□□□□□ -0.75
C9orf3-218ENST00000482056 IGKV3D-7A0A0C4DH55 119 aa10.39□□□□□ -0.75
C9orf3-218ENST00000482056 hADV29S1A0JD25 119 aa10.39□□□□□ -0.75
C9orf3-218ENST00000482056 WIPF1O43516 503 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms