RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 SMLR1H3BR10 107 aa4.28□□□□□ -1.72
USP54-213ENST00000481991 SCO1O75880 301 aa4.28□□□□□ -1.72
USP54-213ENST00000481991 CKS2P33552 79 aa4.28□□□□□ -1.72
USP54-213ENST00000481991 IFI27P40305 119 aaPredicted RBP4.28□□□□□ -1.72
USP54-213ENST00000481991 MRPS36P82909 103 aaKnown RBP4.28□□□□□ -1.72
USP54-213ENST00000481991 RIGQ13278 110 aa4.28□□□□□ -1.72
USP54-213ENST00000481991 COX6B2Q6YFQ2 88 aa4.28□□□□□ -1.72
USP54-213ENST00000481991 LINC00299Q6ZSB3 139 aa4.28□□□□□ -1.72
USP54-213ENST00000481991 NRACQ8N912 160 aa4.28□□□□□ -1.72
USP54-213ENST00000481991 PLEKHB2Q96CS7 222 aa4.28□□□□□ -1.72
USP54-213ENST00000481991 HIGD2AQ9BW72 106 aa4.28□□□□□ -1.72
USP54-213ENST00000481991 KANTRA0A1W2PQU2 76 aa4.27□□□□□ -1.73
USP54-213ENST00000481991 GHRHP01286 108 aa4.27□□□□□ -1.73
USP54-213ENST00000481991 RAB5AP20339 215 aa4.27□□□□□ -1.73
USP54-213ENST00000481991 PCOTHQ58A44 107 aa4.27□□□□□ -1.73
USP54-213ENST00000481991 ZC2HC1BQ5TFG8 222 aa4.27□□□□□ -1.73
USP54-213ENST00000481991 KRTAP13-1Q8IUC0 172 aa4.27□□□□□ -1.73
USP54-213ENST00000481991 FAM104AQ969W3 186 aa4.27□□□□□ -1.73
USP54-213ENST00000481991 TMEM238C9JI98 176 aa4.26□□□□□ -1.73
USP54-213ENST00000481991 F8VRH5 84 aa4.26□□□□□ -1.73
USP54-213ENST00000481991 SPINK1P00995 79 aa4.26□□□□□ -1.73
USP54-213ENST00000481991 MRPL51Q4U2R6 128 aaKnown RBP4.26□□□□□ -1.73
USP54-213ENST00000481991 TEX43Q6ZNM6 134 aa4.26□□□□□ -1.73
USP54-213ENST00000481991 TMEM141Q96I45 108 aa4.26□□□□□ -1.73
USP54-213ENST00000481991 C2orf88Q9BSF0 95 aa4.26□□□□□ -1.73
USP54-213ENST00000481991 TNFRSF6BO95407 300 aa4.25□□□□□ -1.73
USP54-213ENST00000481991 KRTAP19-2Q3LHN2 52 aa4.25□□□□□ -1.73
USP54-213ENST00000481991 Q8IZM0 81 aa4.25□□□□□ -1.73
USP54-213ENST00000481991 C20orf78Q9BR46 151 aa4.25□□□□□ -1.73
USP54-213ENST00000481991 VCX2Q9H322 139 aa4.25□□□□□ -1.73
USP54-213ENST00000481991 IGLV4-3A0A075B6K6 122 aa4.24□□□□□ -1.73
USP54-213ENST00000481991 LINC01561Q8N1V8 128 aa4.24□□□□□ -1.73
USP54-213ENST00000481991 GNB1LQ9BYB4 327 aa4.24□□□□□ -1.73
USP54-213ENST00000481991 EIF5A2Q9GZV4 153 aaKnown RBP4.24□□□□□ -1.73
USP54-213ENST00000481991 TMEM126AQ9H061 195 aa4.24□□□□□ -1.73
USP54-213ENST00000481991 LINC00862A6NCI5 91 aa4.23□□□□□ -1.73
USP54-213ENST00000481991 FAM104BQ5XKR9 115 aa4.23□□□□□ -1.73
USP54-213ENST00000481991 FAM231DQ6ZW35 169 aa4.23□□□□□ -1.73
USP54-213ENST00000481991 SMIM2Q9BVW6 85 aa4.23□□□□□ -1.73
USP54-213ENST00000481991 GEMIN7Q9H840 131 aaKnown RBP4.23□□□□□ -1.73
USP54-213ENST00000481991 BATF3Q9NR55 127 aa4.23□□□□□ -1.73
USP54-213ENST00000481991 IGLV9-49A0A0B4J1Y8 123 aa4.22□□□□□ -1.73
USP54-213ENST00000481991 LOC389332A0A1B0GUA5 103 aa4.22□□□□□ -1.73
USP54-213ENST00000481991 D6R8Y8 96 aa4.22□□□□□ -1.73
USP54-213ENST00000481991 SLC25A20O43772 301 aa4.22□□□□□ -1.73
USP54-213ENST00000481991 CT83Q5H943 113 aa4.22□□□□□ -1.73
USP54-213ENST00000481991 FAM19A2Q8N3H0 131 aa4.22□□□□□ -1.73
USP54-213ENST00000481991 SPRR4Q96PI1 79 aa4.22□□□□□ -1.73
USP54-213ENST00000481991 ZNF706Q9Y5V0 76 aaPredicted RBP4.22□□□□□ -1.73
USP54-213ENST00000481991 TRBV24-1A0A075B6N3 115 aa4.21□□□□□ -1.74
USP54-213ENST00000481991 C9orf92A6NGG3 77 aa4.21□□□□□ -1.74
USP54-213ENST00000481991 M0R378 163 aa4.21□□□□□ -1.74
USP54-213ENST00000481991 PFN2P35080 140 aa4.21□□□□□ -1.74
USP54-213ENST00000481991 RAB14P61106 215 aa4.21□□□□□ -1.74
USP54-213ENST00000481991 CDKN2A-AS1Q9UH64 79 aa4.21□□□□□ -1.74
USP54-213ENST00000481991 PYGO1Q9Y3Y4 419 aa4.21□□□□□ -1.74
USP54-213ENST00000481991 IGLV5-37A0A075B6J1 123 aa4.2□□□□□ -1.74
USP54-213ENST00000481991 TMEM238LA0A1B0GVL6 79 aa4.2□□□□□ -1.74
USP54-213ENST00000481991 NPYP01303 97 aa4.2□□□□□ -1.74
USP54-213ENST00000481991 TAGLN2P37802 199 aaKnown RBP4.2□□□□□ -1.74
USP54-213ENST00000481991 CXCL5P42830 114 aa4.2□□□□□ -1.74
USP54-213ENST00000481991 ZNF345Q14585 488 aa4.2□□□□□ -1.74
USP54-213ENST00000481991 Q6Q795 121 aa4.2□□□□□ -1.74
USP54-213ENST00000481991 AKAP14Q86UN6 197 aa4.2□□□□□ -1.74
USP54-213ENST00000481991 Q8N377 158 aa4.2□□□□□ -1.74
USP54-213ENST00000481991 COX7B2Q8TF08 81 aa4.2□□□□□ -1.74
USP54-213ENST00000481991 NPSP0C0P6 89 aa4.19□□□□□ -1.74
USP54-213ENST00000481991 HERVK_113P63121 156 aa4.19□□□□□ -1.74
USP54-213ENST00000481991 RPL24P83731 157 aaKnown RBP4.19□□□□□ -1.74
USP54-213ENST00000481991 MOBPQ13875 183 aa4.19□□□□□ -1.74
USP54-213ENST00000481991 GAGE2AQ6NT46 116 aa4.19□□□□□ -1.74
USP54-213ENST00000481991 TIMM17AQ99595 171 aa4.19□□□□□ -1.74
USP54-213ENST00000481991 NAT8BQ9UHF3 227 aa4.19□□□□□ -1.74
USP54-213ENST00000481991 F8W036 122 aa4.18□□□□□ -1.74
USP54-213ENST00000481991 KRTAP4-16G5E9R7 235 aaPredicted RBP4.18□□□□□ -1.74
USP54-213ENST00000481991 SEC11AP67812 179 aa4.18□□□□□ -1.74
USP54-213ENST00000481991 C2orf66Q6UXQ4 117 aa4.18□□□□□ -1.74
USP54-213ENST00000481991 TMEM136Q6ZRR5 245 aa4.18□□□□□ -1.74
USP54-213ENST00000481991 LINC01551Q86U37 167 aa4.18□□□□□ -1.74
USP54-213ENST00000481991 SVIPQ8NHG7 77 aa4.18□□□□□ -1.74
USP54-213ENST00000481991 SMCR5Q8TEV8 140 aa4.18□□□□□ -1.74
USP54-213ENST00000481991 SMIM7Q9BQ49 75 aa4.18□□□□□ -1.74
USP54-213ENST00000481991 OSTCQ9NRP0 149 aa4.18□□□□□ -1.74
USP54-213ENST00000481991 CYSLTR1Q9Y271 337 aa4.18□□□□□ -1.74
USP54-213ENST00000481991 HMSDA8MTL9 139 aa4.17□□□□□ -1.74
USP54-213ENST00000481991 ATP5LO75964 103 aa4.17□□□□□ -1.74
USP54-213ENST00000481991 MRPL54Q6P161 138 aaKnown RBP4.17□□□□□ -1.74
USP54-213ENST00000481991 PRELID3AQ96N28 172 aa4.17□□□□□ -1.74
USP54-213ENST00000481991 MRPL18Q9H0U6 180 aaKnown RBP4.17□□□□□ -1.74
USP54-213ENST00000481991 TMEM250H0YL14 139 aa4.16□□□□□ -1.74
USP54-213ENST00000481991 SPINK8P0C7L1 97 aa4.16□□□□□ -1.74
USP54-213ENST00000481991 FAM74A3Q4VXF1 159 aa4.16□□□□□ -1.74
USP54-213ENST00000481991 SSBP3-AS1Q7Z2R9 100 aa4.16□□□□□ -1.74
USP54-213ENST00000481991 AMELXQ99217 191 aa4.16□□□□□ -1.74
USP54-213ENST00000481991 V9GYV3 84 aa4.16□□□□□ -1.74
USP54-213ENST00000481991 hCG_2014768A0A024R1R8 64 aa4.15□□□□□ -1.75
USP54-213ENST00000481991 A0A1B0GW15 77 aa4.15□□□□□ -1.75
USP54-213ENST00000481991 PPBPP02775 128 aa4.15□□□□□ -1.75
USP54-213ENST00000481991 S100A8P05109 93 aa4.15□□□□□ -1.75
USP54-213ENST00000481991 VPREB1P12018 145 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms