RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 RPL39P62891 51 aaKnown RBP2.55□□□□□ -2
VPS13D-208ENST00000481484 SRSF9Q13242 221 aaKnown RBP eCLIP2.55□□□□□ -2
VPS13D-208ENST00000481484 C9orf116Q5BN46 136 aaPredicted RBP2.55□□□□□ -2
VPS13D-208ENST00000481484 MRPL54Q6P161 138 aaKnown RBP2.55□□□□□ -2
VPS13D-208ENST00000481484 C5orf38Q86SI9 138 aa2.55□□□□□ -2
VPS13D-208ENST00000481484 LINC00526Q96FQ7 95 aa2.55□□□□□ -2
VPS13D-208ENST00000481484 PACRGQ96M98 296 aaPredicted RBP2.55□□□□□ -2
VPS13D-208ENST00000481484 PRELID3AQ96N28 172 aa2.55□□□□□ -2
VPS13D-208ENST00000481484 NXT2Q9NPJ8 142 aaKnown RBP2.55□□□□□ -2
VPS13D-208ENST00000481484 TP73-AS1Q9UF72 201 aa2.55□□□□□ -2
VPS13D-208ENST00000481484 RNF213Q63HN8 5207 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 IGLV4-3A0A075B6K6 122 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 H0Y9J4 135 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 IGLV7-43P04211 117 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 KRTAP10-8P60410 259 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 RAB14P61106 215 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 HERVK_113P63121 156 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 UBE2BP63146 152 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 RNASE13Q5GAN3 156 aaKnown RBP2.54□□□□□ -2
VPS13D-208ENST00000481484 C1orf137Q5JT78 98 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 TMEM136Q6ZRR5 245 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 FAM19A3Q7Z5A8 133 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 Q8IZM0 81 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 Q8N8P6 123 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 TIMM17AQ99595 171 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 C6orf48Q9UBA6 75 aa2.54□□□□□ -2
VPS13D-208ENST00000481484 F8VRH5 84 aa2.53□□□□□ -2
VPS13D-208ENST00000481484 UBE2D1P51668 147 aa2.53□□□□□ -2
VPS13D-208ENST00000481484 CKS1BP61024 79 aa2.53□□□□□ -2
VPS13D-208ENST00000481484 COX19Q49B96 90 aa2.53□□□□□ -2
VPS13D-208ENST00000481484 LBHQ53QV2 105 aaPredicted RBP2.53□□□□□ -2
VPS13D-208ENST00000481484 LINC00242Q5T6M2 205 aa2.53□□□□□ -2
VPS13D-208ENST00000481484 C2orf66Q6UXQ4 117 aa2.53□□□□□ -2
VPS13D-208ENST00000481484 FAM19A5Q7Z5A7 132 aaPredicted RBP2.53□□□□□ -2
VPS13D-208ENST00000481484 AMELXQ99217 191 aa2.53□□□□□ -2
VPS13D-208ENST00000481484 VCX2Q9H322 139 aa2.53□□□□□ -2
VPS13D-208ENST00000481484 CARHSP1Q9Y2V2 147 aaKnown RBP2.53□□□□□ -2
VPS13D-208ENST00000481484 A0A1W2PNN7 141 aa2.52□□□□□ -2.01
VPS13D-208ENST00000481484 C9JQL5 133 aa2.52□□□□□ -2.01
VPS13D-208ENST00000481484 KIAA0087Q14695 138 aa2.52□□□□□ -2.01
VPS13D-208ENST00000481484 SFTA2Q6UW10 78 aa2.52□□□□□ -2.01
VPS13D-208ENST00000481484 UQCC3Q6UW78 93 aa2.52□□□□□ -2.01
VPS13D-208ENST00000481484 LINC00173Q6ZV60 143 aa2.52□□□□□ -2.01
VPS13D-208ENST00000481484 PHF5AQ7RTV0 110 aaKnown RBP2.52□□□□□ -2.01
VPS13D-208ENST00000481484 FAM104AQ969W3 186 aa2.52□□□□□ -2.01
VPS13D-208ENST00000481484 OPRPNQ99935 248 aaPredicted RBP2.52□□□□□ -2.01
VPS13D-208ENST00000481484 ALKBH7Q9BT30 221 aaPredicted RBP2.52□□□□□ -2.01
VPS13D-208ENST00000481484 CTDSP1Q9GZU7 261 aa2.52□□□□□ -2.01
VPS13D-208ENST00000481484 GEMIN7Q9H840 131 aaKnown RBP2.52□□□□□ -2.01
VPS13D-208ENST00000481484 IGLV5-45A0A087WSX0 123 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 A0A0U1RQV1 116 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 IGIPA6NJ69 53 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 H3BRM9 83 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 S100PP25815 95 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 RPL28P46779 137 aaKnown RBP2.51□□□□□ -2.01
VPS13D-208ENST00000481484 CTAG1AP78358 180 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 GAGE2EQ4V326 116 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 PDZD11Q5EBL8 140 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 C6orf226Q5I0X4 101 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 C10orf25Q5T742 122 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 UNQ6190/PRO20217Q6UXQ8 127 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 ERASQ7Z444 233 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 TOMM6Q96B49 74 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 GAGE2DQ9UEU5 116 aa2.51□□□□□ -2.01
VPS13D-208ENST00000481484 IGLV5-37A0A075B6J1 123 aa2.5□□□□□ -2.01
VPS13D-208ENST00000481484 TINCRA0A1B0GVN0 87 aa2.5□□□□□ -2.01
VPS13D-208ENST00000481484 FAM168BA1KXE4 195 aa2.5□□□□□ -2.01
VPS13D-208ENST00000481484 SMIM1B2RUZ4 78 aa2.5□□□□□ -2.01
VPS13D-208ENST00000481484 ZNF861PO60384 105 aa2.5□□□□□ -2.01
VPS13D-208ENST00000481484 KRTAP1-4P0C5Y4 121 aa2.5□□□□□ -2.01
VPS13D-208ENST00000481484 C9orf129Q5T035 196 aaKnown RBP2.5□□□□□ -2.01
VPS13D-208ENST00000481484 C2orf82Q6UX34 121 aa2.5□□□□□ -2.01
VPS13D-208ENST00000481484 MRPL55Q7Z7F7 128 aaKnown RBP2.5□□□□□ -2.01
VPS13D-208ENST00000481484 LINC00469Q8N7U9 141 aa2.5□□□□□ -2.01
VPS13D-208ENST00000481484 NKAPP1Q8N9T2 125 aa2.5□□□□□ -2.01
VPS13D-208ENST00000481484 TOMM7Q9P0U1 55 aa2.5□□□□□ -2.01
VPS13D-208ENST00000481484 LOC389332A0A1B0GUA5 103 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 LINC01546A6NGU7 62 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 BCE1O60756 84 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 ATP5LO75964 103 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 RHEBQ15382 184 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 FAM229BQ4G0N7 80 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 CLLU1Q5K131 121 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 FA2HQ7L5A8 372 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 PRR26Q8N8Z3 221 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 COX7B2Q8TF08 81 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 SCGB3A1Q96QR1 104 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 GNB1LQ9BYB4 327 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 SMCO4Q9NRQ5 59 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 CDKN2A-AS1Q9UH64 79 aa2.49□□□□□ -2.01
VPS13D-208ENST00000481484 A0A1B0GVG6 124 aa2.48□□□□□ -2.01
VPS13D-208ENST00000481484 IGKV2-30P06310 120 aa2.48□□□□□ -2.01
VPS13D-208ENST00000481484 IGLC3P0DOY3 106 aa2.48□□□□□ -2.01
VPS13D-208ENST00000481484 CRYGAP11844 174 aa2.48□□□□□ -2.01
VPS13D-208ENST00000481484 COX17Q14061 63 aa2.48□□□□□ -2.01
VPS13D-208ENST00000481484 PMVKQ15126 192 aa2.48□□□□□ -2.01
VPS13D-208ENST00000481484 KRTAP7-1Q8IUC3 87 aa2.48□□□□□ -2.01
VPS13D-208ENST00000481484 SEC11CQ9BY50 192 aa2.48□□□□□ -2.01
VPS13D-208ENST00000481484 C22orf24Q9Y442 160 aa2.48□□□□□ -2.01
VPS13D-208ENST00000481484 IGLV5-39A0A0G2JS06 123 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms