RNA–Protein interactions for RNA: ENST00000478021.1

TRAF4-211, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-211ENST00000478021 CST9LQ9H4G1 147 aa14.19□□□□□ -0.14
TRAF4-211ENST00000478021 TRBV30A0A0K0K1B3 111 aa14.18□□□□□ -0.14
TRAF4-211ENST00000478021 TLX1NBP0CAT3 122 aa14.18□□□□□ -0.14
TRAF4-211ENST00000478021 PMVKQ15126 192 aa14.18□□□□□ -0.14
TRAF4-211ENST00000478021 GAGE2EQ4V326 116 aa14.18□□□□□ -0.14
TRAF4-211ENST00000478021 GAGE2DQ9UEU5 116 aa14.18□□□□□ -0.14
TRAF4-211ENST00000478021 TINCRA0A1B0GVN0 87 aa14.17□□□□□ -0.14
TRAF4-211ENST00000478021 C6orf226Q5I0X4 101 aa14.17□□□□□ -0.14
TRAF4-211ENST00000478021 Q8IZM0 81 aa14.17□□□□□ -0.14
TRAF4-211ENST00000478021 CKS1BP61024 79 aa14.16□□□□□ -0.14
TRAF4-211ENST00000478021 LRP1Q07954 4544 aaKnown RBP14.15□□□□□ -0.14
TRAF4-211ENST00000478021 OXTP01178 125 aa14.15□□□□□ -0.14
TRAF4-211ENST00000478021 HBDP02042 147 aa14.15□□□□□ -0.14
TRAF4-211ENST00000478021 FAM168BA1KXE4 195 aa14.14□□□□□ -0.15
TRAF4-211ENST00000478021 SMIM1B2RUZ4 78 aa14.14□□□□□ -0.15
TRAF4-211ENST00000478021 NDUFA6P56556 154 aa14.14□□□□□ -0.15
TRAF4-211ENST00000478021 PHF5AQ7RTV0 110 aaKnown RBP14.14□□□□□ -0.15
TRAF4-211ENST00000478021 FAT3Q8TDW7 4589 aa14.13□□□□□ -0.15
TRAF4-211ENST00000478021 IGLV5-45A0A087WSX0 123 aa14.13□□□□□ -0.15
TRAF4-211ENST00000478021 RAB5BP61020 215 aa14.13□□□□□ -0.15
TRAF4-211ENST00000478021 FAM19A5Q7Z5A7 132 aaPredicted RBP14.12□□□□□ -0.15
TRAF4-211ENST00000478021 NDUFC2-KCTD14E9PQ53 114 aa14.11□□□□□ -0.15
TRAF4-211ENST00000478021 SPINK8P0C7L1 97 aa14.11□□□□□ -0.15
TRAF4-211ENST00000478021 PDZD11Q5EBL8 140 aa14.11□□□□□ -0.15
TRAF4-211ENST00000478021 COX7B2Q8TF08 81 aa14.09□□□□□ -0.15
TRAF4-211ENST00000478021 F8VRH5 84 aa14.08□□□□□ -0.16
TRAF4-211ENST00000478021 C9orf129Q5T035 196 aaKnown RBP14.08□□□□□ -0.16
TRAF4-211ENST00000478021 IGLC3P0DOY3 106 aa14.07□□□□□ -0.16
TRAF4-211ENST00000478021 ATP5LO75964 103 aa14.06□□□□□ -0.16
TRAF4-211ENST00000478021 CXCL5P42830 114 aa14.06□□□□□ -0.16
TRAF4-211ENST00000478021 KRTAP7-1Q8IUC3 87 aa14.06□□□□□ -0.16
TRAF4-211ENST00000478021 H3BRM9 83 aa14.05□□□□□ -0.16
TRAF4-211ENST00000478021 PSORS1C2Q9UIG4 136 aa14.05□□□□□ -0.16
TRAF4-211ENST00000478021 TRGC2P03986 189 aa14.04□□□□□ -0.16
TRAF4-211ENST00000478021 ZNF22P17026 224 aaPredicted RBP14.04□□□□□ -0.16
TRAF4-211ENST00000478021 BAGE3Q86Y29 109 aa14.04□□□□□ -0.16
TRAF4-211ENST00000478021 CHCHD1Q96BP2 118 aaKnown RBP14.04□□□□□ -0.16
TRAF4-211ENST00000478021 M0QXV9 152 aa14.03□□□□□ -0.16
TRAF4-211ENST00000478021 KRTAP11-1Q8IUC1 163 aa14.02□□□□□ -0.17
TRAF4-211ENST00000478021 XAGE1AQ9HD64 81 aa14.02□□□□□ -0.17
TRAF4-211ENST00000478021 C1orf137Q5JT78 98 aa14.01□□□□□ -0.17
TRAF4-211ENST00000478021 C11orf86A6NJI1 115 aa14□□□□□ -0.17
TRAF4-211ENST00000478021 SPINK6Q6UWN8 80 aa14□□□□□ -0.17
TRAF4-211ENST00000478021 MT1HL1P0DM35 61 aa13.99□□□□□ -0.17
TRAF4-211ENST00000478021 SRSF9Q13242 221 aaKnown RBP eCLIP13.99□□□□□ -0.177e-9■■■□□ 15.9
TRAF4-211ENST00000478021 SERTAD4-AS1Q5TG53 156 aa13.99□□□□□ -0.17
TRAF4-211ENST00000478021 FAM19A2Q8N3H0 131 aa13.99□□□□□ -0.17
TRAF4-211ENST00000478021 TMEM170BQ5T4T1 132 aa13.98□□□□□ -0.17
TRAF4-211ENST00000478021 IFI27L1Q96BM0 104 aa13.98□□□□□ -0.17
TRAF4-211ENST00000478021 CHTOPQ9Y3Y2 248 aaKnown RBP13.98□□□□□ -0.17
TRAF4-211ENST00000478021 IGLV5-39A0A0G2JS06 123 aa13.97□□□□□ -0.17
TRAF4-211ENST00000478021 HSBP1O75506 76 aa13.97□□□□□ -0.17
TRAF4-211ENST00000478021 UBE2BP63146 152 aa13.97□□□□□ -0.17
TRAF4-211ENST00000478021 COLCA2A8K830 154 aa13.96□□□□□ -0.17
TRAF4-211ENST00000478021 SERF1AO75920 110 aa13.93□□□□□ -0.18
TRAF4-211ENST00000478021 LINC00310P59036 64 aa13.93□□□□□ -0.18
TRAF4-211ENST00000478021 TRAV12-1A0A0B4J245 112 aa13.92□□□□□ -0.18
TRAF4-211ENST00000478021 IGLV7-43P04211 117 aa13.92□□□□□ -0.18
TRAF4-211ENST00000478021 REG3GQ6UW15 175 aa13.92□□□□□ -0.18
TRAF4-211ENST00000478021 C22orf24Q9Y442 160 aa13.92□□□□□ -0.18
TRAF4-211ENST00000478021 SCO1O75880 301 aa13.91□□□□□ -0.18
TRAF4-211ENST00000478021 LINC01600Q96MT4 127 aa13.91□□□□□ -0.18
TRAF4-211ENST00000478021 H0Y8G0 127 aa13.9□□□□□ -0.18
TRAF4-211ENST00000478021 PFN2P35080 140 aa13.9□□□□□ -0.18
TRAF4-211ENST00000478021 ZNF625Q96I27 306 aaPredicted RBP13.89□□□□□ -0.19
TRAF4-211ENST00000478021 NUPR1O60356 82 aa13.88□□□□□ -0.19
TRAF4-211ENST00000478021 TMEM223A0PJW6 202 aa13.86□□□□□ -0.19
TRAF4-211ENST00000478021 LEPROTL1O95214 131 aa13.86□□□□□ -0.19
TRAF4-211ENST00000478021 ERG28Q9UKR5 140 aa13.86□□□□□ -0.19
TRAF4-211ENST00000478021 LBHQ53QV2 105 aaPredicted RBP13.85□□□□□ -0.19
TRAF4-211ENST00000478021 MRPL55Q7Z7F7 128 aaKnown RBP13.85□□□□□ -0.19
TRAF4-211ENST00000478021 HMCN2Q8NDA2 5059 aa13.84□□□□□ -0.19
TRAF4-211ENST00000478021 FABP4P15090 132 aa13.83□□□□□ -0.2
TRAF4-211ENST00000478021 ODF1Q14990 250 aa13.83□□□□□ -0.2
TRAF4-211ENST00000478021 TP73-AS1Q9UF72 201 aa13.83□□□□□ -0.2
TRAF4-211ENST00000478021 DIRC1Q969H9 104 aa13.82□□□□□ -0.2
TRAF4-211ENST00000478021 PLA2G2DQ9UNK4 145 aa13.82□□□□□ -0.2
TRAF4-211ENST00000478021 GAGE10A6NGK3 116 aa13.81□□□□□ -0.2
TRAF4-211ENST00000478021 LINC00167Q96N53 147 aa13.81□□□□□ -0.2
TRAF4-211ENST00000478021 TNXBP22105 4242 aa13.8□□□□□ -0.2
TRAF4-211ENST00000478021 RPL37AP8A6NKH3 93 aa13.8□□□□□ -0.2
TRAF4-211ENST00000478021 H0Y9J4 135 aa13.8□□□□□ -0.2
TRAF4-211ENST00000478021 NKAPP1Q8N9T2 125 aa13.8□□□□□ -0.2
TRAF4-211ENST00000478021 SND1-IT1Q9HBX3 110 aa13.8□□□□□ -0.2
TRAF4-211ENST00000478021 SFTA2Q6UW10 78 aa13.79□□□□□ -0.2
TRAF4-211ENST00000478021 HSPB8Q9UJY1 196 aa13.79□□□□□ -0.2
TRAF4-211ENST00000478021 IGLV5-37A0A075B6J1 123 aa13.78□□□□□ -0.2
TRAF4-211ENST00000478021 KRTAP10-8P60410 259 aa13.78□□□□□ -0.2
TRAF4-211ENST00000478021 COX17Q14061 63 aa13.78□□□□□ -0.2
TRAF4-211ENST00000478021 A0A0U1RRA0 63 aa13.77□□□□□ -0.21
TRAF4-211ENST00000478021 PMCHL2Q9BQD1 86 aa13.76□□□□□ -0.21
TRAF4-211ENST00000478021 HIST1H2BKO60814 126 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 HIST1H2BJP06899 126 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 HIST1H2BOP23527 126 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 HIST1H2BBP33778 126 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 LINC00158P58513 81 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 HIST1H2BDP58876 126 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 HIST1H2BCP62807 126 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 HIST2H2BEQ16778 126 aa13.75□□□□□ -0.21
TRAF4-211ENST00000478021 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms