RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 LRP1Q07954 4544 aaKnown RBP11.85□□□□□ -0.51
PTCD3-210ENST00000473829 SMIM1B2RUZ4 78 aa11.85□□□□□ -0.51
PTCD3-210ENST00000473829 RAB5BP61020 215 aa11.85□□□□□ -0.51
PTCD3-210ENST00000473829 Q6ZRP5 223 aa11.85□□□□□ -0.51
PTCD3-210ENST00000473829 Q8IZM0 81 aa11.85□□□□□ -0.51
PTCD3-210ENST00000473829 TLX1NBP0CAT3 122 aa11.84□□□□□ -0.51
PTCD3-210ENST00000473829 C7orf33Q8WU49 177 aa11.84□□□□□ -0.51
PTCD3-210ENST00000473829 PACRGQ96M98 296 aaPredicted RBP11.84□□□□□ -0.51
PTCD3-210ENST00000473829 TRBV30A0A0K0K1B3 111 aa11.83□□□□□ -0.52
PTCD3-210ENST00000473829 TRGC2P03986 189 aa11.83□□□□□ -0.52
PTCD3-210ENST00000473829 PRSS2P07478 247 aa11.83□□□□□ -0.52
PTCD3-210ENST00000473829 C9orf116Q5BN46 136 aaPredicted RBP11.83□□□□□ -0.52
PTCD3-210ENST00000473829 FAT3Q8TDW7 4589 aa11.83□□□□□ -0.52
PTCD3-210ENST00000473829 DMBT1Q9UGM3 2413 aaPredicted RBP11.82□□□□□ -0.52
PTCD3-210ENST00000473829 IGLC3P0DOY3 106 aa11.81□□□□□ -0.52
PTCD3-210ENST00000473829 NDUFA6P56556 154 aa11.81□□□□□ -0.52
PTCD3-210ENST00000473829 C6orf226Q5I0X4 101 aa11.81□□□□□ -0.52
PTCD3-210ENST00000473829 CHCHD1Q96BP2 118 aaKnown RBP11.81□□□□□ -0.52
PTCD3-210ENST00000473829 COLCA2A8K830 154 aa11.8□□□□□ -0.52
PTCD3-210ENST00000473829 SPINK8P0C7L1 97 aa11.8□□□□□ -0.52
PTCD3-210ENST00000473829 CKS1BP61024 79 aa11.8□□□□□ -0.52
PTCD3-210ENST00000473829 PRR3P79522 188 aaKnown RBP11.8□□□□□ -0.52
PTCD3-210ENST00000473829 GAGE2EQ4V326 116 aa11.8□□□□□ -0.52
PTCD3-210ENST00000473829 GAGE2DQ9UEU5 116 aa11.8□□□□□ -0.52
PTCD3-210ENST00000473829 FAM168BA1KXE4 195 aa11.79□□□□□ -0.52
PTCD3-210ENST00000473829 ATP5LO75964 103 aa11.79□□□□□ -0.52
PTCD3-210ENST00000473829 NDUFC2-KCTD14E9PQ53 114 aa11.78□□□□□ -0.52
PTCD3-210ENST00000473829 KRTAP29-1A8MX34 341 aaPredicted RBP11.77□□□□□ -0.53
PTCD3-210ENST00000473829 SCO1O75880 301 aa11.77□□□□□ -0.53
PTCD3-210ENST00000473829 ZNF22P17026 224 aaPredicted RBP11.77□□□□□ -0.53
PTCD3-210ENST00000473829 LINC00310P59036 64 aa11.77□□□□□ -0.53
PTCD3-210ENST00000473829 KRTAP7-1Q8IUC3 87 aa11.77□□□□□ -0.53
PTCD3-210ENST00000473829 COX7B2Q8TF08 81 aa11.77□□□□□ -0.53
PTCD3-210ENST00000473829 F8VRH5 84 aa11.76□□□□□ -0.53
PTCD3-210ENST00000473829 PHF5AQ7RTV0 110 aaKnown RBP11.76□□□□□ -0.53
PTCD3-210ENST00000473829 BAGE3Q86Y29 109 aa11.76□□□□□ -0.53
PTCD3-210ENST00000473829 FAM19A2Q8N3H0 131 aa11.76□□□□□ -0.53
PTCD3-210ENST00000473829 C11orf86A6NJI1 115 aa11.75□□□□□ -0.53
PTCD3-210ENST00000473829 C9orf129Q5T035 196 aaKnown RBP11.75□□□□□ -0.53
PTCD3-210ENST00000473829 H3BRM9 83 aa11.74□□□□□ -0.53
PTCD3-210ENST00000473829 HSBP1O75506 76 aa11.74□□□□□ -0.53
PTCD3-210ENST00000473829 CXCL5P42830 114 aa11.74□□□□□ -0.53
PTCD3-210ENST00000473829 FAM19A5Q7Z5A7 132 aaPredicted RBP11.74□□□□□ -0.53
PTCD3-210ENST00000473829 IGLV5-39A0A0G2JS06 123 aa11.73□□□□□ -0.53
PTCD3-210ENST00000473829 SERF1AO75920 110 aa11.73□□□□□ -0.53
PTCD3-210ENST00000473829 IFI27L1Q96BM0 104 aa11.73□□□□□ -0.53
PTCD3-210ENST00000473829 J3QL48 77 aa11.72□□□□□ -0.53
PTCD3-210ENST00000473829 KRTAP11-1Q8IUC1 163 aa11.71□□□□□ -0.53
PTCD3-210ENST00000473829 CHTOPQ9Y3Y2 248 aaKnown RBP11.71□□□□□ -0.53
PTCD3-210ENST00000473829 NUPR1O60356 82 aa11.7□□□□□ -0.54
PTCD3-210ENST00000473829 OXTP01178 125 aa11.7□□□□□ -0.54
PTCD3-210ENST00000473829 XAGE1AQ9HD64 81 aa11.7□□□□□ -0.54
PTCD3-210ENST00000473829 TRAV12-1A0A0B4J245 112 aa11.69□□□□□ -0.54
PTCD3-210ENST00000473829 PSORS1C2Q9UIG4 136 aa11.69□□□□□ -0.54
PTCD3-210ENST00000473829 M0QXV9 152 aa11.68□□□□□ -0.54
PTCD3-210ENST00000473829 TMEM170BQ5T4T1 132 aa11.68□□□□□ -0.54
PTCD3-210ENST00000473829 SERTAD4-AS1Q5TG53 156 aa11.68□□□□□ -0.54
PTCD3-210ENST00000473829 LEPROTL1O95214 131 aa11.64□□□□□ -0.55
PTCD3-210ENST00000473829 SRSF9Q13242 221 aaKnown RBP eCLIP11.64□□□□□ -0.55
PTCD3-210ENST00000473829 TMEM223A0PJW6 202 aa11.63□□□□□ -0.55
PTCD3-210ENST00000473829 H0Y8G0 127 aa11.63□□□□□ -0.55
PTCD3-210ENST00000473829 ODF1Q14990 250 aa11.63□□□□□ -0.55
PTCD3-210ENST00000473829 MT1HL1P0DM35 61 aa11.62□□□□□ -0.55
PTCD3-210ENST00000473829 C1orf137Q5JT78 98 aa11.62□□□□□ -0.55
PTCD3-210ENST00000473829 HIST1H2BKO60814 126 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 HIST1H2BJP06899 126 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 FABP4P15090 132 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 HIST1H2BOP23527 126 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 HIST1H2BBP33778 126 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 HIST1H2BDP58876 126 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 HIST1H2BCP62807 126 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 HIST2H2BEQ16778 126 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.61□□□□□ -0.55
PTCD3-210ENST00000473829 SPINK6Q6UWN8 80 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 HIST1H2BHQ93079 126 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 HIST1H2BNQ99877 126 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 HIST1H2BMQ99879 126 aa11.61□□□□□ -0.55
PTCD3-210ENST00000473829 ZNF625Q96I27 306 aaPredicted RBP11.6□□□□□ -0.55
PTCD3-210ENST00000473829 C22orf24Q9Y442 160 aa11.6□□□□□ -0.55
PTCD3-210ENST00000473829 PFN2P35080 140 aa11.59□□□□□ -0.55
PTCD3-210ENST00000473829 UBE2BP63146 152 aa11.59□□□□□ -0.55
PTCD3-210ENST00000473829 ERG28Q9UKR5 140 aa11.59□□□□□ -0.55
PTCD3-210ENST00000473829 TNXBP22105 4242 aa11.59□□□□□ -0.55
PTCD3-210ENST00000473829 HSPB8Q9UJY1 196 aa11.58□□□□□ -0.56
PTCD3-210ENST00000473829 IGLV7-43P04211 117 aa11.57□□□□□ -0.56
PTCD3-210ENST00000473829 PMCHL2Q9BQD1 86 aa11.56□□□□□ -0.56
PTCD3-210ENST00000473829 TP73-AS1Q9UF72 201 aa11.55□□□□□ -0.56
PTCD3-210ENST00000473829 PLA2G2DQ9UNK4 145 aa11.55□□□□□ -0.56
PTCD3-210ENST00000473829 SFTA2Q6UW10 78 aa11.54□□□□□ -0.56
PTCD3-210ENST00000473829 MRPL55Q7Z7F7 128 aaKnown RBP11.54□□□□□ -0.56
PTCD3-210ENST00000473829 LINC01600Q96MT4 127 aa11.54□□□□□ -0.56
PTCD3-210ENST00000473829 SND1-IT1Q9HBX3 110 aa11.54□□□□□ -0.56
PTCD3-210ENST00000473829 IGLV5-37A0A075B6J1 123 aa11.53□□□□□ -0.56
PTCD3-210ENST00000473829 COX17Q14061 63 aa11.53□□□□□ -0.56
PTCD3-210ENST00000473829 PLNP26678 52 aa11.52□□□□□ -0.57
PTCD3-210ENST00000473829 TSPEAR-AS2P59090 65 aa11.52□□□□□ -0.57
PTCD3-210ENST00000473829 LBHQ53QV2 105 aaPredicted RBP11.52□□□□□ -0.57
PTCD3-210ENST00000473829 REG3GQ6UW15 175 aa11.51□□□□□ -0.57
PTCD3-210ENST00000473829 Q8NDZ9 215 aa11.51□□□□□ -0.57
PTCD3-210ENST00000473829 LINC00167Q96N53 147 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms