RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 Q6ZPA2 131 aa9.73□□□□□ -0.85
COL6A3-209ENST00000472056 HCG22E2RYF7 251 aa9.73□□□□□ -0.85
COL6A3-209ENST00000472056 IGKV2-28A0A075B6P5 120 aa9.72□□□□□ -0.85
COL6A3-209ENST00000472056 IGKV2D-28P01615 120 aa9.72□□□□□ -0.85
COL6A3-209ENST00000472056 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-209ENST00000472056 RPL37AP8A6NKH3 93 aa9.72□□□□□ -0.85
COL6A3-209ENST00000472056 Q8N6K4 173 aa9.72□□□□□ -0.85
COL6A3-209ENST00000472056 CRIP3Q6Q6R5 217 aa9.72□□□□□ -0.85
COL6A3-209ENST00000472056 POM121L12Q8N7R1 296 aa9.72□□□□□ -0.85
COL6A3-209ENST00000472056 SMIM1B2RUZ4 78 aa9.71□□□□□ -0.85
COL6A3-209ENST00000472056 H0Y9P7 68 aa9.71□□□□□ -0.85
COL6A3-209ENST00000472056 C8orf87E5RJ46 101 aa9.71□□□□□ -0.86
COL6A3-209ENST00000472056 LINC01547P58512 204 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-209ENST00000472056 REG3GQ6UW15 175 aa9.7□□□□□ -0.86
COL6A3-209ENST00000472056 GRNP28799 593 aaKnown RBP9.7□□□□□ -0.86
COL6A3-209ENST00000472056 LINC00242Q5T6M2 205 aa9.7□□□□□ -0.86
COL6A3-209ENST00000472056 LINC00310P59036 64 aa9.69□□□□□ -0.86
COL6A3-209ENST00000472056 C2orf48Q96LS8 159 aa9.68□□□□□ -0.86
COL6A3-209ENST00000472056 PLAC8L1A1L4L8 177 aa9.68□□□□□ -0.86
COL6A3-209ENST00000472056 DEFB1P60022 68 aa9.68□□□□□ -0.86
COL6A3-209ENST00000472056 IGLV1-40P01703 118 aa9.67□□□□□ -0.86
COL6A3-209ENST00000472056 CEP295Q9C0D2 2601 aa9.67□□□□□ -0.86
COL6A3-209ENST00000472056 KPRPQ5T749 579 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-209ENST00000472056 IGLV9-49A0A0B4J1Y8 123 aa9.67□□□□□ -0.86
COL6A3-209ENST00000472056 CYSRT1A8MQ03 144 aa9.66□□□□□ -0.86
COL6A3-209ENST00000472056 BPTFQ12830 3046 aa9.66□□□□□ -0.86
COL6A3-209ENST00000472056 DEFB4AO15263 64 aa9.66□□□□□ -0.86
COL6A3-209ENST00000472056 LINC00575Q6W349 94 aa9.66□□□□□ -0.86
COL6A3-209ENST00000472056 X6R8D5 127 aa9.66□□□□□ -0.86
COL6A3-209ENST00000472056 CDIP1Q9H305 208 aa9.65□□□□□ -0.86
COL6A3-209ENST00000472056 A0A1B0GU69 56 aa9.65□□□□□ -0.86
COL6A3-209ENST00000472056 LOC100131303A0A0U1RQF7 123 aa9.64□□□□□ -0.87
COL6A3-209ENST00000472056 ERC2-IT1O76042 136 aa9.64□□□□□ -0.87
COL6A3-209ENST00000472056 PLA2G2AP14555 144 aa9.64□□□□□ -0.87
COL6A3-209ENST00000472056 CRIP2P52943 208 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-209ENST00000472056 BEAN1Q3B7T3 259 aa9.63□□□□□ -0.87
COL6A3-209ENST00000472056 A0A087WYN8 130 aa9.63□□□□□ -0.87
COL6A3-209ENST00000472056 ACYP2P14621 99 aa9.63□□□□□ -0.87
COL6A3-209ENST00000472056 MSMPQ1L6U9 139 aa9.62□□□□□ -0.87
COL6A3-209ENST00000472056 IGLV2-18A0A075B6J9 118 aa9.62□□□□□ -0.87
COL6A3-209ENST00000472056 PPDPFQ9H3Y8 114 aa9.62□□□□□ -0.87
COL6A3-209ENST00000472056 FASNP49327 2511 aaKnown RBP9.61□□□□□ -0.87
COL6A3-209ENST00000472056 Q8N2B8 174 aa9.61□□□□□ -0.87
COL6A3-209ENST00000472056 SPINT4Q6UDR6 99 aa9.61□□□□□ -0.87
COL6A3-209ENST00000472056 SHISA2Q6UWI4 295 aa9.61□□□□□ -0.87
COL6A3-209ENST00000472056 C11orf71Q6IPW1 123 aa9.6□□□□□ -0.87
COL6A3-209ENST00000472056 BBC3Q96PG8 261 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-209ENST00000472056 URB1-AS1Q96HZ7 61 aa9.59□□□□□ -0.87
COL6A3-209ENST00000472056 CYP4F30PQ9H0H9 118 aa9.59□□□□□ -0.87
COL6A3-209ENST00000472056 PRR9Q5T870 116 aa9.59□□□□□ -0.87
COL6A3-209ENST00000472056 LINC00846Q9NV44 126 aa9.59□□□□□ -0.87
COL6A3-209ENST00000472056 C11orf21Q9P2W6 132 aa9.59□□□□□ -0.87
COL6A3-209ENST00000472056 LOC110117498A0A087WWA1 95 aa9.59□□□□□ -0.88
COL6A3-209ENST00000472056 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-209ENST00000472056 IGHV6-1A0A0B4J1U7 121 aa9.58□□□□□ -0.88
COL6A3-209ENST00000472056 CIRBP-AS1Q8TBR5 109 aa9.58□□□□□ -0.88
COL6A3-209ENST00000472056 ZNF843Q8N446 348 aa9.58□□□□□ -0.88
COL6A3-209ENST00000472056 ADAMTSL4-AS1Q5T5F5 129 aa9.57□□□□□ -0.88
COL6A3-209ENST00000472056 C1orf229Q6ZS94 237 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-209ENST00000472056 C1orf64Q8NEQ6 169 aa9.57□□□□□ -0.88
COL6A3-209ENST00000472056 NHLRC4P0CG21 123 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-209ENST00000472056 RETNLBQ9BQ08 111 aa9.56□□□□□ -0.88
COL6A3-209ENST00000472056 ZNF702PQ9H963 129 aa9.56□□□□□ -0.88
COL6A3-209ENST00000472056 A0A087WVE0 104 aa9.56□□□□□ -0.88
COL6A3-209ENST00000472056 Q6ZSV7 163 aa9.56□□□□□ -0.88
COL6A3-209ENST00000472056 Q6ZTC4 211 aa9.56□□□□□ -0.88
COL6A3-209ENST00000472056 PROK1P58294 105 aa9.56□□□□□ -0.88
COL6A3-209ENST00000472056 PRM2P04554 102 aa9.55□□□□□ -0.88
COL6A3-209ENST00000472056 Q8NA96 180 aa9.55□□□□□ -0.88
COL6A3-209ENST00000472056 IGLV5-39A0A0G2JS06 123 aa9.55□□□□□ -0.88
COL6A3-209ENST00000472056 C7orf65Q6ZTY9 151 aa9.55□□□□□ -0.88
COL6A3-209ENST00000472056 Q9BRP9 147 aa9.54□□□□□ -0.88
COL6A3-209ENST00000472056 TSPEAR-AS2P59090 65 aa9.54□□□□□ -0.88
COL6A3-209ENST00000472056 NUPR2A6NF83 97 aa9.53□□□□□ -0.88
COL6A3-209ENST00000472056 SBSPONQ8IVN8 264 aa9.53□□□□□ -0.88
COL6A3-209ENST00000472056 A0A096LNJ9 63 aa9.53□□□□□ -0.88
COL6A3-209ENST00000472056 PCOTHQ58A44 107 aa9.52□□□□□ -0.89
COL6A3-209ENST00000472056 UNQ6190/PRO20217Q6UXQ8 127 aa9.52□□□□□ -0.89
COL6A3-209ENST00000472056 IGLV5-45A0A087WSX0 123 aa9.51□□□□□ -0.89
COL6A3-209ENST00000472056 SPINK1P00995 79 aa9.51□□□□□ -0.89
COL6A3-209ENST00000472056 LINC00482Q8N8I6 264 aa9.51□□□□□ -0.89
COL6A3-209ENST00000472056 ATP11AUNQ6ZP68 121 aa9.5□□□□□ -0.89
COL6A3-209ENST00000472056 COX6A2Q02221 97 aa9.5□□□□□ -0.89
COL6A3-209ENST00000472056 PLA2G1BP04054 148 aaKnown RBP9.5□□□□□ -0.89
COL6A3-209ENST00000472056 LINC00337Q8N6G1 96 aa9.49□□□□□ -0.89
COL6A3-209ENST00000472056 C11orf72Q8NBR9 251 aa9.49□□□□□ -0.89
COL6A3-209ENST00000472056 GAS8-AS1O95177 125 aa9.49□□□□□ -0.89
COL6A3-209ENST00000472056 PRLHP81277 87 aa9.49□□□□□ -0.89
COL6A3-209ENST00000472056 EPG5Q9HCE0 2579 aa9.48□□□□□ -0.89
COL6A3-209ENST00000472056 PRO0461Q9UI25 63 aa9.47□□□□□ -0.89
COL6A3-209ENST00000472056 C6orf48Q9UBA6 75 aa9.47□□□□□ -0.89
COL6A3-209ENST00000472056 TRAV22A0A0B4J277 110 aa9.47□□□□□ -0.89
COL6A3-209ENST00000472056 A0A087WSZ3 146 aa9.46□□□□□ -0.89
COL6A3-209ENST00000472056 C4orf26Q17RF5 130 aa9.45□□□□□ -0.9
COL6A3-209ENST00000472056 IGLV1-51P01701 117 aa9.45□□□□□ -0.9
COL6A3-209ENST00000472056 ELOF1P60002 83 aaKnown RBP9.44□□□□□ -0.9
COL6A3-209ENST00000472056 FHL2Q14192 279 aa9.44□□□□□ -0.9
COL6A3-209ENST00000472056 CD164Q04900 197 aa9.43□□□□□ -0.9
COL6A3-209ENST00000472056 OXLD1Q5BKU9 147 aa9.43□□□□□ -0.9
COL6A3-209ENST00000472056 MOBPQ13875 183 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms