RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 KIAA0087Q14695 138 aa6.29□□□□□ -1.4
VPS52-216ENST00000471309 C6orf226Q5I0X4 101 aa6.29□□□□□ -1.4
VPS52-216ENST00000471309 MEIG1Q5JSS6 88 aa6.29□□□□□ -1.4
VPS52-216ENST00000471309 A0A1B0GWB2 263 aa6.28□□□□□ -1.4
VPS52-216ENST00000471309 CKS1BP61024 79 aa6.28□□□□□ -1.4
VPS52-216ENST00000471309 SPAG11BQ08648 103 aa6.28□□□□□ -1.4
VPS52-216ENST00000471309 ADAMTSL4-AS1Q5T5F5 129 aa6.28□□□□□ -1.4
VPS52-216ENST00000471309 CFAP161Q6P656 301 aa6.28□□□□□ -1.4
VPS52-216ENST00000471309 UBE2DNLQ8IWF7 75 aa6.28□□□□□ -1.4
VPS52-216ENST00000471309 PPDPFQ9H3Y8 114 aa6.28□□□□□ -1.4
VPS52-216ENST00000471309 NHP2Q9NX24 153 aaKnown RBP6.28□□□□□ -1.4
VPS52-216ENST00000471309 STAB2Q8WWQ8 2551 aa6.27□□□□□ -1.41
VPS52-216ENST00000471309 A0A1B0GV90 55 aa6.27□□□□□ -1.41
VPS52-216ENST00000471309 TAX1BP3O14907 124 aa6.27□□□□□ -1.41
VPS52-216ENST00000471309 SMIM13P0DJ93 91 aa6.27□□□□□ -1.41
VPS52-216ENST00000471309 IFITM1P13164 125 aa6.27□□□□□ -1.41
VPS52-216ENST00000471309 RPL24P83731 157 aaKnown RBP6.27□□□□□ -1.41
VPS52-216ENST00000471309 MUSTN1Q8IVN3 82 aa6.27□□□□□ -1.41
VPS52-216ENST00000471309 RMI2Q96E14 147 aa6.27□□□□□ -1.41
VPS52-216ENST00000471309 IGKV2D-24A0A075B6R9 120 aa6.26□□□□□ -1.41
VPS52-216ENST00000471309 K7ERJ3 54 aa6.26□□□□□ -1.41
VPS52-216ENST00000471309 COPS9Q8WXC6 57 aa6.26□□□□□ -1.41
VPS52-216ENST00000471309 Q9HAA7 133 aa6.26□□□□□ -1.41
VPS52-216ENST00000471309 ERG28Q9UKR5 140 aa6.26□□□□□ -1.41
VPS52-216ENST00000471309 COL7A1Q02388 2944 aa6.26□□□□□ -1.41
VPS52-216ENST00000471309 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.25□□□□□ -1.41
VPS52-216ENST00000471309 A4D1N5 150 aa6.25□□□□□ -1.41
VPS52-216ENST00000471309 C2orf82Q6UX34 121 aa6.25□□□□□ -1.41
VPS52-216ENST00000471309 DAND5Q8N907 189 aa6.25□□□□□ -1.41
VPS52-216ENST00000471309 C15orf56Q8N910 161 aa6.25□□□□□ -1.41
VPS52-216ENST00000471309 LINC00308Q8TCZ7 52 aa6.25□□□□□ -1.41
VPS52-216ENST00000471309 COX11Q9Y6N1 276 aa6.25□□□□□ -1.41
VPS52-216ENST00000471309 GVQW2A0A096LPI5 108 aaPredicted RBP6.24□□□□□ -1.41
VPS52-216ENST00000471309 A0A0B4J2C4 111 aa6.24□□□□□ -1.41
VPS52-216ENST00000471309 LCE2BO14633 110 aa6.24□□□□□ -1.41
VPS52-216ENST00000471309 COX17Q14061 63 aa6.24□□□□□ -1.41
VPS52-216ENST00000471309 NTN5Q8WTR8 489 aaPredicted RBP6.24□□□□□ -1.41
VPS52-216ENST00000471309 DYNC2H1Q8NCM8 4307 aaKnown RBP6.23□□□□□ -1.41
VPS52-216ENST00000471309 A0A0U1RRA0 63 aa6.23□□□□□ -1.41
VPS52-216ENST00000471309 C9orf118A6NHY6 69 aa6.23□□□□□ -1.41
VPS52-216ENST00000471309 F8WDY8 70 aa6.23□□□□□ -1.41
VPS52-216ENST00000471309 LINC00158P58513 81 aa6.23□□□□□ -1.41
VPS52-216ENST00000471309 MIR7-3HGQ8N6C7 128 aa6.23□□□□□ -1.41
VPS52-216ENST00000471309 MUC7Q8TAX7 377 aa6.23□□□□□ -1.41
VPS52-216ENST00000471309 RAB37Q96AX2 223 aa6.23□□□□□ -1.41
VPS52-216ENST00000471309 C2orf48Q96LS8 159 aa6.23□□□□□ -1.41
VPS52-216ENST00000471309 KRTAP1-5Q9BYS1 174 aa6.23□□□□□ -1.41
VPS52-216ENST00000471309 ZNF561-AS1K7EIQ3 104 aa6.22□□□□□ -1.41
VPS52-216ENST00000471309 CFC1BP0CG36 223 aa6.22□□□□□ -1.41
VPS52-216ENST00000471309 CFC1P0CG37 223 aa6.22□□□□□ -1.41
VPS52-216ENST00000471309 PFN2P35080 140 aa6.22□□□□□ -1.41
VPS52-216ENST00000471309 NPC2P61916 151 aa6.22□□□□□ -1.41
VPS52-216ENST00000471309 TTC32Q5I0X7 151 aa6.22□□□□□ -1.41
VPS52-216ENST00000471309 SOSTDC1Q6X4U4 206 aa6.22□□□□□ -1.41
VPS52-216ENST00000471309 C6orf223Q8N319 242 aa6.22□□□□□ -1.41
VPS52-216ENST00000471309 TRBV30A0A0K0K1B3 111 aa6.21□□□□□ -1.42
VPS52-216ENST00000471309 EIF4EBP3O60516 100 aaPredicted RBP6.21□□□□□ -1.42
VPS52-216ENST00000471309 HIGD2BQ4VC39 106 aa6.21□□□□□ -1.42
VPS52-216ENST00000471309 UNQ6190/PRO20217Q6UXQ8 127 aa6.21□□□□□ -1.42
VPS52-216ENST00000471309 CAMK2N2Q96S95 79 aa6.21□□□□□ -1.42
VPS52-216ENST00000471309 PRO1854Q9UHT4 67 aa6.21□□□□□ -1.42
VPS52-216ENST00000471309 LOC107984156A0A0G2JMH3 177 aa6.2□□□□□ -1.42
VPS52-216ENST00000471309 NBDYA0A0U1RRE5 68 aa6.2□□□□□ -1.42
VPS52-216ENST00000471309 H3BUT2 72 aa6.2□□□□□ -1.42
VPS52-216ENST00000471309 C10orf25Q5T742 122 aa6.2□□□□□ -1.42
VPS52-216ENST00000471309 ARL17AQ8IVW1 177 aa6.2□□□□□ -1.42
VPS52-216ENST00000471309 LINC00526Q96FQ7 95 aa6.2□□□□□ -1.42
VPS52-216ENST00000471309 WWC2-AS2Q96NR7 200 aa6.2□□□□□ -1.42
VPS52-216ENST00000471309 A0A1W2PPM0 123 aa6.19□□□□□ -1.42
VPS52-216ENST00000471309 USP17L23D6RBM5 183 aa6.19□□□□□ -1.42
VPS52-216ENST00000471309 TSPAN13O95857 204 aa6.19□□□□□ -1.42
VPS52-216ENST00000471309 SND1-IT1Q9HBX3 110 aa6.19□□□□□ -1.42
VPS52-216ENST00000471309 C6orf48Q9UBA6 75 aa6.19□□□□□ -1.42
VPS52-216ENST00000471309 C9orf116Q5BN46 136 aaPredicted RBP6.18□□□□□ -1.42
VPS52-216ENST00000471309 CASC10Q5T4H9 136 aa6.18□□□□□ -1.42
VPS52-216ENST00000471309 NAA38Q9BRA0 125 aaKnown RBP6.18□□□□□ -1.42
VPS52-216ENST00000471309 DNAH1Q9P2D7 4330 aa6.17□□□□□ -1.42
VPS52-216ENST00000471309 FABP2P12104 132 aa6.17□□□□□ -1.42
VPS52-216ENST00000471309 SYCNQ0VAF6 134 aa6.17□□□□□ -1.42
VPS52-216ENST00000471309 VAMP3Q15836 100 aa6.17□□□□□ -1.42
VPS52-216ENST00000471309 Q6ZRU5 148 aa6.17□□□□□ -1.42
VPS52-216ENST00000471309 NDUFC2O95298 119 aa6.16□□□□□ -1.42
VPS52-216ENST00000471309 RNF151Q2KHN1 245 aa6.16□□□□□ -1.42
VPS52-216ENST00000471309 CARD19Q96LW7 228 aa6.16□□□□□ -1.42
VPS52-216ENST00000471309 PLECQ15149 4684 aaKnown RBP6.16□□□□□ -1.42
VPS52-216ENST00000471309 STARD9Q9P2P6 4700 aa6.15□□□□□ -1.42
VPS52-216ENST00000471309 IGKV2-28A0A075B6P5 120 aa6.15□□□□□ -1.42
VPS52-216ENST00000471309 TRAV13-2A0A0B4J235 113 aa6.15□□□□□ -1.42
VPS52-216ENST00000471309 NDUFC2-KCTD14E9PQ53 114 aa6.15□□□□□ -1.42
VPS52-216ENST00000471309 K7EP34 96 aa6.15□□□□□ -1.42
VPS52-216ENST00000471309 PSCAO43653 123 aa6.15□□□□□ -1.42
VPS52-216ENST00000471309 IGKV2D-28P01615 120 aa6.15□□□□□ -1.42
VPS52-216ENST00000471309 RPL13AP40429 203 aaKnown RBP6.15□□□□□ -1.42
VPS52-216ENST00000471309 Q1RN00 199 aa6.15□□□□□ -1.42
VPS52-216ENST00000471309 LYRM7Q5U5X0 104 aa6.15□□□□□ -1.42
VPS52-216ENST00000471309 SPCS1Q9Y6A9 102 aa6.15□□□□□ -1.42
VPS52-216ENST00000471309 CSMD3Q7Z407 3707 aa6.14□□□□□ -1.43
VPS52-216ENST00000471309 C3orf84H3BNL1 204 aa6.14□□□□□ -1.43
VPS52-216ENST00000471309 UBE2V1Q13404 147 aa6.14□□□□□ -1.43
VPS52-216ENST00000471309 GTF2H5Q6ZYL4 71 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms