RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-211ENST00000466054 MTORP42345 2549 aa-0.87□□□□□ -2.55
LRCH3-211ENST00000466054 TCHHQ07283 1943 aa-0.87□□□□□ -2.55
LRCH3-211ENST00000466054 KDM5AP29375 1690 aaKnown RBP-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 ARHGEF12Q9NZN5 1544 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 A0A0C4DFX4 3053 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 K7EP13 123 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 DEFB135Q30KP9 77 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 DEFB112Q30KQ8 113 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 MYOZ3Q8TDC0 251 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 TMEM263Q8WUH6 116 aaKnown RBP-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 TSC22D3Q99576 134 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 POLA1P09884 1462 aaPredicted RBP-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 GAPVD1Q14C86 1478 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 UTP20O75691 2785 aaKnown RBP-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 ZZEF1O43149 2961 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 LRRK2Q5S007 2527 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 CEP295Q9C0D2 2601 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 CSMD1Q96PZ7 3565 aa-0.88□□□□□ -2.55
LRCH3-211ENST00000466054 CCDC168Q8NDH2 2452 aa-0.89□□□□□ -2.55
LRCH3-211ENST00000466054 SMG1Q96Q15 3661 aaKnown RBP-0.89□□□□□ -2.55
LRCH3-211ENST00000466054 COL6A5A8TX70 2615 aa-0.89□□□□□ -2.55
LRCH3-211ENST00000466054 FRYQ5TBA9 3013 aa-0.89□□□□□ -2.55
LRCH3-211ENST00000466054 C1orf54Q8WWF1 131 aa-0.89□□□□□ -2.55
LRCH3-211ENST00000466054 NBEAL2Q6ZNJ1 2754 aa-0.89□□□□□ -2.55
LRCH3-211ENST00000466054 BTAF1O14981 1849 aa-0.89□□□□□ -2.55
LRCH3-211ENST00000466054 SMG6Q86US8 1419 aaKnown RBP-0.89□□□□□ -2.55
LRCH3-211ENST00000466054 QRICH2Q9H0J4 1663 aa-0.9□□□□□ -2.55
LRCH3-211ENST00000466054 MGAM2Q2M2H8 2515 aa-0.9□□□□□ -2.55
LRCH3-211ENST00000466054 SPINK4O60575 86 aa-0.9□□□□□ -2.55
LRCH3-211ENST00000466054 DMXL1Q9Y485 3027 aa-0.9□□□□□ -2.55
LRCH3-211ENST00000466054 NSD3Q9BZ95 1437 aa-0.9□□□□□ -2.55
LRCH3-211ENST00000466054 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.9□□□□□ -2.556e-9■■■■□ 21.6
LRCH3-211ENST00000466054 DNAH8Q96JB1 4490 aa-0.91□□□□□ -2.55
LRCH3-211ENST00000466054 DNAH5Q8TE73 4624 aa-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 LOC100130705A0A1B0GUX0 176 aa-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 MT1HP80294 61 aa-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 SPRR4Q96PI1 79 aa-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 FXYD6Q9H0Q3 95 aa-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 NXT2Q9NPJ8 142 aaKnown RBP-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 FAIMQ9NVQ4 179 aa-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 TULP4Q9NRJ4 1543 aa-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 URB1O60287 2271 aaKnown RBP-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 DNAH17Q9UFH2 4485 aa-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 ARHGEF5Q12774 1597 aa-0.91□□□□□ -2.56
LRCH3-211ENST00000466054 PKD1L2Q7Z442 2459 aa-0.92□□□□□ -2.56
LRCH3-211ENST00000466054 NBASA2RRP1 2371 aa-0.92□□□□□ -2.56
LRCH3-211ENST00000466054 GCN1Q92616 2671 aaKnown RBP-0.92□□□□□ -2.56
LRCH3-211ENST00000466054 WHAMMP3Q1A5X7 153 aa-0.92□□□□□ -2.56
LRCH3-211ENST00000466054 LINC00474Q9P2X8 69 aa-0.92□□□□□ -2.56
LRCH3-211ENST00000466054 TRIOO75962 3097 aa-0.92□□□□□ -2.56
LRCH3-211ENST00000466054 ROBO1Q9Y6N7 1651 aa-0.92□□□□□ -2.56
LRCH3-211ENST00000466054 EYSQ5T1H1 3165 aa-0.92□□□□□ -2.56
LRCH3-211ENST00000466054 KTN1Q86UP2 1357 aaKnown RBP-0.93□□□□□ -2.56
LRCH3-211ENST00000466054 TRBV7-4A0A0J9YYF1 115 aa-0.93□□□□□ -2.56
LRCH3-211ENST00000466054 CHKB-CPT1BH3BT56 60 aa-0.93□□□□□ -2.56
LRCH3-211ENST00000466054 HMGN1P05114 100 aa-0.93□□□□□ -2.56
LRCH3-211ENST00000466054 CDC42SE2Q9NRR3 84 aa-0.93□□□□□ -2.56
LRCH3-211ENST00000466054 CHD7Q9P2D1 2997 aa-0.93□□□□□ -2.56
LRCH3-211ENST00000466054 UQCR10Q9UDW1 63 aa-0.93□□□□□ -2.56
LRCH3-211ENST00000466054 CFAP46Q8IYW2 2715 aa-0.93□□□□□ -2.56
LRCH3-211ENST00000466054 TRRAPQ9Y4A5 3859 aa-0.93□□□□□ -2.56
LRCH3-211ENST00000466054 A2ML1A8K2U0 1454 aa-0.93□□□□□ -2.56
LRCH3-211ENST00000466054 DNAJC13O75165 2243 aa-0.94□□□□□ -2.56
LRCH3-211ENST00000466054 IGLC1P0CG04 106 aa-0.94□□□□□ -2.56
LRCH3-211ENST00000466054 AKAIN1P0CW23 69 aa-0.94□□□□□ -2.56
LRCH3-211ENST00000466054 C10orf113Q5VZT2 155 aa-0.94□□□□□ -2.56
LRCH3-211ENST00000466054 FAM107BQ9H098 131 aa-0.94□□□□□ -2.56
LRCH3-211ENST00000466054 MAGI1Q96QZ7 1491 aaPredicted RBP-0.94□□□□□ -2.56
LRCH3-211ENST00000466054 ACACAQ13085 2346 aa-0.94□□□□□ -2.56
LRCH3-211ENST00000466054 C5orf42Q9H799 3197 aa-0.94□□□□□ -2.56
LRCH3-211ENST00000466054 COL4A6Q14031 1691 aa-0.94□□□□□ -2.56
LRCH3-211ENST00000466054 ZFHX3Q15911 3703 aa-0.94□□□□□ -2.56
LRCH3-211ENST00000466054 PP6455Q8WZ26 134 aa-0.95□□□□□ -2.56
LRCH3-211ENST00000466054 SPENQ96T58 3664 aaKnown RBP-0.95□□□□□ -2.56
LRCH3-211ENST00000466054 ITPR2Q14571 2701 aa-0.95□□□□□ -2.56
LRCH3-211ENST00000466054 ADAMTS12P58397 1594 aa-0.96□□□□□ -2.56
LRCH3-211ENST00000466054 UBE2L5PA0A1B0GUS4 154 aa-0.96□□□□□ -2.56
LRCH3-211ENST00000466054 OOSP1A8MZH6 123 aa-0.96□□□□□ -2.56
LRCH3-211ENST00000466054 MT1HL1P0DM35 61 aa-0.96□□□□□ -2.56
LRCH3-211ENST00000466054 UBE2L3P68036 154 aaKnown RBP-0.96□□□□□ -2.56
LRCH3-211ENST00000466054 DNAH10Q8IVF4 4471 aa-0.96□□□□□ -2.56
LRCH3-211ENST00000466054 HMGXB3Q12766 1538 aa-0.97□□□□□ -2.56
LRCH3-211ENST00000466054 H0YGG7 62 aa-0.97□□□□□ -2.56
LRCH3-211ENST00000466054 H3BNG1 76 aa-0.97□□□□□ -2.56
LRCH3-211ENST00000466054 UBA52P62987 128 aaKnown RBP-0.97□□□□□ -2.56
LRCH3-211ENST00000466054 DEFB105AQ8NG35 78 aa-0.97□□□□□ -2.56
LRCH3-211ENST00000466054 SRCAPQ6ZRS2 3230 aa-0.97□□□□□ -2.57
LRCH3-211ENST00000466054 PTPN23Q9H3S7 1636 aa-0.97□□□□□ -2.57
LRCH3-211ENST00000466054 TET3O43151 1660 aa-0.97□□□□□ -2.57
LRCH3-211ENST00000466054 KNL1Q8NG31 2342 aa-0.98□□□□□ -2.57
LRCH3-211ENST00000466054 SLIT1O75093 1534 aa-0.98□□□□□ -2.57
LRCH3-211ENST00000466054 H0YAA0 97 aa-0.98□□□□□ -2.57
LRCH3-211ENST00000466054 K7EP34 96 aa-0.98□□□□□ -2.57
LRCH3-211ENST00000466054 ATP5EP56381 51 aaPredicted RBP-0.98□□□□□ -2.57
LRCH3-211ENST00000466054 FAM167A-AS1Q96KT0 104 aa-0.98□□□□□ -2.57
LRCH3-211ENST00000466054 TROQ12816 1431 aaPredicted RBP-0.98□□□□□ -2.57
LRCH3-211ENST00000466054 ANKRD50Q9ULJ7 1429 aa-0.98□□□□□ -2.57
LRCH3-211ENST00000466054 REV3LO60673 3130 aa-0.99□□□□□ -2.57
LRCH3-211ENST00000466054 TRANK1O15050 2925 aa-0.99□□□□□ -2.57
LRCH3-211ENST00000466054 DEFB1P60022 68 aa-0.99□□□□□ -2.57
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms