RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 FLG2Q5D862 2391 aaPredicted RBP8.24□□□□□ -1.09
COL28A1-206ENST00000465339 RAB5BP61020 215 aa8.24□□□□□ -1.09
COL28A1-206ENST00000465339 SLC7A5P1Q8MH63 180 aa8.24□□□□□ -1.09
COL28A1-206ENST00000465339 GEMIN7Q9H840 131 aaKnown RBP8.24□□□□□ -1.09
COL28A1-206ENST00000465339 KIAA0087Q14695 138 aa8.23□□□□□ -1.09
COL28A1-206ENST00000465339 C7orf33Q8WU49 177 aa8.23□□□□□ -1.09
COL28A1-206ENST00000465339 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.22□□□□□ -1.09
COL28A1-206ENST00000465339 GAGE2BQ13066 116 aa8.22□□□□□ -1.09
COL28A1-206ENST00000465339 PMVKQ15126 192 aa8.22□□□□□ -1.09
COL28A1-206ENST00000465339 UNQ6190/PRO20217Q6UXQ8 127 aa8.22□□□□□ -1.09
COL28A1-206ENST00000465339 CST9LQ9H4G1 147 aa8.22□□□□□ -1.09
COL28A1-206ENST00000465339 A0A0J9YXV3 536 aa8.21□□□□□ -1.1
COL28A1-206ENST00000465339 TINCRA0A1B0GVN0 87 aa8.21□□□□□ -1.1
COL28A1-206ENST00000465339 PRSS2P07478 247 aa8.21□□□□□ -1.1
COL28A1-206ENST00000465339 URB1-AS1Q96HZ7 61 aa8.21□□□□□ -1.1
COL28A1-206ENST00000465339 CDKN2A-AS1Q9UH64 79 aa8.21□□□□□ -1.1
COL28A1-206ENST00000465339 TRBV30A0A0K0K1B3 111 aa8.2□□□□□ -1.1
COL28A1-206ENST00000465339 HBDP02042 147 aa8.2□□□□□ -1.1
COL28A1-206ENST00000465339 TLX1NBP0CAT3 122 aa8.2□□□□□ -1.1
COL28A1-206ENST00000465339 RPL18AQ02543 176 aaKnown RBP8.2□□□□□ -1.1
COL28A1-206ENST00000465339 C6orf226Q5I0X4 101 aa8.2□□□□□ -1.1
COL28A1-206ENST00000465339 C10orf25Q5T742 122 aa8.2□□□□□ -1.1
COL28A1-206ENST00000465339 CBLN2Q8IUK8 224 aa8.2□□□□□ -1.1
COL28A1-206ENST00000465339 PACRGQ96M98 296 aaPredicted RBP8.2□□□□□ -1.1
COL28A1-206ENST00000465339 A0A096LNJ9 63 aa8.19□□□□□ -1.1
COL28A1-206ENST00000465339 Q8IZM0 81 aa8.19□□□□□ -1.1
COL28A1-206ENST00000465339 C6orf48Q9UBA6 75 aa8.19□□□□□ -1.1
COL28A1-206ENST00000465339 DMBT1Q9UGM3 2413 aaPredicted RBP8.19□□□□□ -1.1
COL28A1-206ENST00000465339 CKS1BP61024 79 aa8.18□□□□□ -1.1
COL28A1-206ENST00000465339 C2orf82Q6UX34 121 aa8.18□□□□□ -1.1
COL28A1-206ENST00000465339 LINC00469Q8N7U9 141 aa8.18□□□□□ -1.1
COL28A1-206ENST00000465339 TOMM7Q9P0U1 55 aa8.18□□□□□ -1.1
COL28A1-206ENST00000465339 IGLV5-45A0A087WSX0 123 aa8.17□□□□□ -1.1
COL28A1-206ENST00000465339 ATP5LO75964 103 aa8.17□□□□□ -1.1
COL28A1-206ENST00000465339 PDZD11Q5EBL8 140 aa8.17□□□□□ -1.1
COL28A1-206ENST00000465339 CHCHD1Q96BP2 118 aaKnown RBP8.17□□□□□ -1.1
COL28A1-206ENST00000465339 KRTAP9-9Q9BYP9 154 aa8.17□□□□□ -1.1
COL28A1-206ENST00000465339 KRTAP9-4Q9BYQ2 154 aa8.17□□□□□ -1.1
COL28A1-206ENST00000465339 NDUFA6P56556 154 aa8.16□□□□□ -1.1
COL28A1-206ENST00000465339 PMCHL1Q16048 86 aa8.16□□□□□ -1.1
COL28A1-206ENST00000465339 C9orf116Q5BN46 136 aaPredicted RBP8.16□□□□□ -1.1
COL28A1-206ENST00000465339 Q6ZRP5 223 aa8.16□□□□□ -1.1
COL28A1-206ENST00000465339 A0A1W2PNN7 141 aa8.15□□□□□ -1.1
COL28A1-206ENST00000465339 KRTAP29-1A8MX34 341 aaPredicted RBP8.15□□□□□ -1.1
COL28A1-206ENST00000465339 SMIM1B2RUZ4 78 aa8.15□□□□□ -1.1
COL28A1-206ENST00000465339 H3BRM9 83 aa8.15□□□□□ -1.1
COL28A1-206ENST00000465339 SCGB1D1O95968 90 aa8.15□□□□□ -1.1
COL28A1-206ENST00000465339 CXCL5P42830 114 aa8.15□□□□□ -1.1
COL28A1-206ENST00000465339 LINC00310P59036 64 aa8.15□□□□□ -1.1
COL28A1-206ENST00000465339 NDUFC2-KCTD14E9PQ53 114 aa8.14□□□□□ -1.11
COL28A1-206ENST00000465339 F8VRH5 84 aa8.14□□□□□ -1.11
COL28A1-206ENST00000465339 OXTP01178 125 aa8.14□□□□□ -1.11
COL28A1-206ENST00000465339 TRGC2P03986 189 aa8.14□□□□□ -1.11
COL28A1-206ENST00000465339 IGLC3P0DOY3 106 aa8.14□□□□□ -1.11
COL28A1-206ENST00000465339 HNRNPA3P51991 378 aaKnown RBP8.13□□□□□ -1.11
COL28A1-206ENST00000465339 GAGE2EQ4V326 116 aa8.13□□□□□ -1.11
COL28A1-206ENST00000465339 BAGE3Q86Y29 109 aa8.13□□□□□ -1.11
COL28A1-206ENST00000465339 COX7B2Q8TF08 81 aa8.13□□□□□ -1.11
COL28A1-206ENST00000465339 GAGE2DQ9UEU5 116 aa8.13□□□□□ -1.11
COL28A1-206ENST00000465339 COLCA2A8K830 154 aa8.12□□□□□ -1.11
COL28A1-206ENST00000465339 PRR3P79522 188 aaKnown RBP8.12□□□□□ -1.11
COL28A1-206ENST00000465339 C9orf118A6NHY6 69 aa8.11□□□□□ -1.11
COL28A1-206ENST00000465339 HSBP1O75506 76 aa8.11□□□□□ -1.11
COL28A1-206ENST00000465339 SPINK8P0C7L1 97 aa8.11□□□□□ -1.11
COL28A1-206ENST00000465339 MYCBP2O75592 4640 aa8.11□□□□□ -1.11
COL28A1-206ENST00000465339 IFI27L1Q96BM0 104 aa8.1□□□□□ -1.11
COL28A1-206ENST00000465339 TRAV12-1A0A0B4J245 112 aa8.09□□□□□ -1.11
COL28A1-206ENST00000465339 IGLV5-39A0A0G2JS06 123 aa8.09□□□□□ -1.11
COL28A1-206ENST00000465339 FAM168BA1KXE4 195 aa8.09□□□□□ -1.11
COL28A1-206ENST00000465339 ZNF22P17026 224 aaPredicted RBP8.09□□□□□ -1.11
COL28A1-206ENST00000465339 PHF5AQ7RTV0 110 aaKnown RBP8.09□□□□□ -1.11
COL28A1-206ENST00000465339 CHTOPQ9Y3Y2 248 aaKnown RBP8.09□□□□□ -1.11
COL28A1-206ENST00000465339 C9orf129Q5T035 196 aaKnown RBP8.08□□□□□ -1.12
COL28A1-206ENST00000465339 C11orf86A6NJI1 115 aa8.07□□□□□ -1.12
COL28A1-206ENST00000465339 KRTAP19-4Q3LI73 84 aa8.07□□□□□ -1.12
COL28A1-206ENST00000465339 TMEM170BQ5T4T1 132 aa8.07□□□□□ -1.12
COL28A1-206ENST00000465339 FAM19A5Q7Z5A7 132 aaPredicted RBP8.07□□□□□ -1.12
COL28A1-206ENST00000465339 FAM19A2Q8N3H0 131 aa8.07□□□□□ -1.12
COL28A1-206ENST00000465339 PKHD1L1Q86WI1 4243 aa8.07□□□□□ -1.12
COL28A1-206ENST00000465339 SERF1AO75920 110 aa8.06□□□□□ -1.12
COL28A1-206ENST00000465339 SPINK6Q6UWN8 80 aa8.06□□□□□ -1.12
COL28A1-206ENST00000465339 PSORS1C2Q9UIG4 136 aa8.06□□□□□ -1.12
COL28A1-206ENST00000465339 M0QXV9 152 aa8.05□□□□□ -1.12
COL28A1-206ENST00000465339 SRSF9Q13242 221 aaKnown RBP eCLIP8.05□□□□□ -1.12
COL28A1-206ENST00000465339 KRTAP7-1Q8IUC3 87 aa8.05□□□□□ -1.12
COL28A1-206ENST00000465339 XAGE1AQ9HD64 81 aa8.05□□□□□ -1.12
COL28A1-206ENST00000465339 LEPROTL1O95214 131 aa8.04□□□□□ -1.12
COL28A1-206ENST00000465339 SFTA2Q6UW10 78 aa8.04□□□□□ -1.12
COL28A1-206ENST00000465339 C1orf137Q5JT78 98 aa8.03□□□□□ -1.12
COL28A1-206ENST00000465339 TMEM223A0PJW6 202 aa8.02□□□□□ -1.13
COL28A1-206ENST00000465339 SCO1O75880 301 aa8.02□□□□□ -1.13
COL28A1-206ENST00000465339 UBE2BP63146 152 aa8.02□□□□□ -1.13
COL28A1-206ENST00000465339 COX17Q14061 63 aa8.02□□□□□ -1.13
COL28A1-206ENST00000465339 LBHQ53QV2 105 aaPredicted RBP8.02□□□□□ -1.13
COL28A1-206ENST00000465339 HSPB8Q9UJY1 196 aa8.02□□□□□ -1.13
COL28A1-206ENST00000465339 C22orf24Q9Y442 160 aa8.02□□□□□ -1.13
COL28A1-206ENST00000465339 NUPR1O60356 82 aa8.01□□□□□ -1.13
COL28A1-206ENST00000465339 SERTAD4-AS1Q5TG53 156 aa8.01□□□□□ -1.13
COL28A1-206ENST00000465339 REG3GQ6UW15 175 aa8.01□□□□□ -1.13
COL28A1-206ENST00000465339 TP73-AS1Q9UF72 201 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms