RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 GEMIN7Q9H840 131 aaKnown RBP11.55□□□□□ -0.56
HOXD3-204ENST00000459979 A0A096LNJ9 63 aa11.54□□□□□ -0.56
HOXD3-204ENST00000459979 TINCRA0A1B0GVN0 87 aa11.54□□□□□ -0.56
HOXD3-204ENST00000459979 A0A1W2PNN7 141 aa11.54□□□□□ -0.56
HOXD3-204ENST00000459979 Q8IZM0 81 aa11.54□□□□□ -0.56
HOXD3-204ENST00000459979 IGLV5-45A0A087WSX0 123 aa11.53□□□□□ -0.56
HOXD3-204ENST00000459979 PMVKQ15126 192 aa11.53□□□□□ -0.56
HOXD3-204ENST00000459979 RAB5BP61020 215 aa11.52□□□□□ -0.57
HOXD3-204ENST00000459979 PRR3P79522 188 aaKnown RBP11.52□□□□□ -0.57
HOXD3-204ENST00000459979 C9orf116Q5BN46 136 aaPredicted RBP11.52□□□□□ -0.57
HOXD3-204ENST00000459979 C2orf82Q6UX34 121 aa11.52□□□□□ -0.57
HOXD3-204ENST00000459979 Q6ZRP5 223 aa11.52□□□□□ -0.57
HOXD3-204ENST00000459979 PRSS2P07478 247 aa11.51□□□□□ -0.57
HOXD3-204ENST00000459979 C6orf226Q5I0X4 101 aa11.51□□□□□ -0.57
HOXD3-204ENST00000459979 PACRGQ96M98 296 aaPredicted RBP11.51□□□□□ -0.57
HOXD3-204ENST00000459979 NDUFC2-KCTD14E9PQ53 114 aa11.49□□□□□ -0.57
HOXD3-204ENST00000459979 HBDP02042 147 aa11.49□□□□□ -0.57
HOXD3-204ENST00000459979 CKS1BP61024 79 aa11.49□□□□□ -0.57
HOXD3-204ENST00000459979 PDZD11Q5EBL8 140 aa11.49□□□□□ -0.57
HOXD3-204ENST00000459979 LINC00469Q8N7U9 141 aa11.49□□□□□ -0.57
HOXD3-204ENST00000459979 TOMM7Q9P0U1 55 aa11.49□□□□□ -0.57
HOXD3-204ENST00000459979 SMIM1B2RUZ4 78 aa11.48□□□□□ -0.57
HOXD3-204ENST00000459979 CXCL5P42830 114 aa11.47□□□□□ -0.57
HOXD3-204ENST00000459979 CBLN2Q8IUK8 224 aa11.47□□□□□ -0.57
HOXD3-204ENST00000459979 SLC7A5P1Q8MH63 180 aa11.47□□□□□ -0.57
HOXD3-204ENST00000459979 F8VRH5 84 aa11.46□□□□□ -0.57
HOXD3-204ENST00000459979 GAGE2EQ4V326 116 aa11.46□□□□□ -0.57
HOXD3-204ENST00000459979 GAGE2DQ9UEU5 116 aa11.46□□□□□ -0.57
HOXD3-204ENST00000459979 ATP5LO75964 103 aa11.45□□□□□ -0.58
HOXD3-204ENST00000459979 IGLC3P0DOY3 106 aa11.45□□□□□ -0.58
HOXD3-204ENST00000459979 CHCHD1Q96BP2 118 aaKnown RBP11.45□□□□□ -0.58
HOXD3-204ENST00000459979 PMCHL1Q16048 86 aa11.44□□□□□ -0.58
HOXD3-204ENST00000459979 FAM168BA1KXE4 195 aa11.43□□□□□ -0.58
HOXD3-204ENST00000459979 H3BRM9 83 aa11.43□□□□□ -0.58
HOXD3-204ENST00000459979 SRSF9Q13242 221 aaKnown RBP eCLIP11.43□□□□□ -0.58
HOXD3-204ENST00000459979 PHF5AQ7RTV0 110 aaKnown RBP11.43□□□□□ -0.58
HOXD3-204ENST00000459979 COX7B2Q8TF08 81 aa11.43□□□□□ -0.58
HOXD3-204ENST00000459979 C9orf129Q5T035 196 aaKnown RBP11.42□□□□□ -0.58
HOXD3-204ENST00000459979 SPINK6Q6UWN8 80 aa11.42□□□□□ -0.58
HOXD3-204ENST00000459979 KRTAP7-1Q8IUC3 87 aa11.42□□□□□ -0.58
HOXD3-204ENST00000459979 ODF1Q14990 250 aa11.41□□□□□ -0.58
HOXD3-204ENST00000459979 PSORS1C2Q9UIG4 136 aa11.41□□□□□ -0.58
HOXD3-204ENST00000459979 IGLV5-39A0A0G2JS06 123 aa11.4□□□□□ -0.58
HOXD3-204ENST00000459979 SPINK8P0C7L1 97 aa11.4□□□□□ -0.58
HOXD3-204ENST00000459979 NDUFA6P56556 154 aa11.4□□□□□ -0.58
HOXD3-204ENST00000459979 ZNF22P17026 224 aaPredicted RBP11.39□□□□□ -0.59
HOXD3-204ENST00000459979 BAGE3Q86Y29 109 aa11.39□□□□□ -0.59
HOXD3-204ENST00000459979 TRGC2P03986 189 aa11.38□□□□□ -0.59
HOXD3-204ENST00000459979 FAM19A5Q7Z5A7 132 aaPredicted RBP11.38□□□□□ -0.59
HOXD3-204ENST00000459979 TNXBP22105 4242 aa11.36□□□□□ -0.59
HOXD3-204ENST00000459979 M0QXV9 152 aa11.36□□□□□ -0.59
HOXD3-204ENST00000459979 TRAV12-1A0A0B4J245 112 aa11.35□□□□□ -0.59
HOXD3-204ENST00000459979 C11orf86A6NJI1 115 aa11.35□□□□□ -0.59
HOXD3-204ENST00000459979 COLCA2A8K830 154 aa11.35□□□□□ -0.59
HOXD3-204ENST00000459979 KRTAP11-1Q8IUC1 163 aa11.35□□□□□ -0.59
HOXD3-204ENST00000459979 IFI27L1Q96BM0 104 aa11.35□□□□□ -0.59
HOXD3-204ENST00000459979 LINC01600Q96MT4 127 aa11.35□□□□□ -0.59
HOXD3-204ENST00000459979 LRP2P98164 4655 aa11.34□□□□□ -0.59
HOXD3-204ENST00000459979 HSBP1O75506 76 aa11.34□□□□□ -0.59
HOXD3-204ENST00000459979 C1orf137Q5JT78 98 aa11.34□□□□□ -0.59
HOXD3-204ENST00000459979 XAGE1AQ9HD64 81 aa11.34□□□□□ -0.59
HOXD3-204ENST00000459979 CHTOPQ9Y3Y2 248 aaKnown RBP11.34□□□□□ -0.59
HOXD3-204ENST00000459979 REG3GQ6UW15 175 aa11.33□□□□□ -0.6
HOXD3-204ENST00000459979 IGLV7-43P04211 117 aa11.31□□□□□ -0.6
HOXD3-204ENST00000459979 FAM19A2Q8N3H0 131 aa11.31□□□□□ -0.6
HOXD3-204ENST00000459979 TP73-AS1Q9UF72 201 aa11.31□□□□□ -0.6
HOXD3-204ENST00000459979 C22orf24Q9Y442 160 aa11.31□□□□□ -0.6
HOXD3-204ENST00000459979 LINC00310P59036 64 aa11.3□□□□□ -0.6
HOXD3-204ENST00000459979 TMEM170BQ5T4T1 132 aa11.3□□□□□ -0.6
HOXD3-204ENST00000459979 SFTA2Q6UW10 78 aa11.3□□□□□ -0.6
HOXD3-204ENST00000459979 UBE2BP63146 152 aa11.29□□□□□ -0.6
HOXD3-204ENST00000459979 LBHQ53QV2 105 aaPredicted RBP11.29□□□□□ -0.6
HOXD3-204ENST00000459979 SERF1AO75920 110 aa11.28□□□□□ -0.6
HOXD3-204ENST00000459979 COX17Q14061 63 aa11.27□□□□□ -0.61
HOXD3-204ENST00000459979 IGLV5-37A0A075B6J1 123 aa11.26□□□□□ -0.61
HOXD3-204ENST00000459979 TMEM223A0PJW6 202 aa11.26□□□□□ -0.61
HOXD3-204ENST00000459979 LEPROTL1O95214 131 aa11.26□□□□□ -0.61
HOXD3-204ENST00000459979 KRTAP10-8P60410 259 aa11.26□□□□□ -0.61
HOXD3-204ENST00000459979 ZNF625Q96I27 306 aaPredicted RBP11.26□□□□□ -0.61
HOXD3-204ENST00000459979 MRPL55Q7Z7F7 128 aaKnown RBP11.25□□□□□ -0.61
HOXD3-204ENST00000459979 DIRC1Q969H9 104 aa11.25□□□□□ -0.61
HOXD3-204ENST00000459979 ERG28Q9UKR5 140 aa11.25□□□□□ -0.61
HOXD3-204ENST00000459979 NUPR1O60356 82 aa11.24□□□□□ -0.61
HOXD3-204ENST00000459979 RNF213Q63HN8 5207 aa11.24□□□□□ -0.61
HOXD3-204ENST00000459979 PFN2P35080 140 aa11.23□□□□□ -0.61
HOXD3-204ENST00000459979 HSPB8Q9UJY1 196 aa11.22□□□□□ -0.61
HOXD3-204ENST00000459979 H0Y9J4 135 aa11.21□□□□□ -0.61
HOXD3-204ENST00000459979 LINC00167Q96N53 147 aa11.21□□□□□ -0.61
HOXD3-204ENST00000459979 SND1-IT1Q9HBX3 110 aa11.21□□□□□ -0.61
HOXD3-204ENST00000459979 SCO1O75880 301 aa11.19□□□□□ -0.62
HOXD3-204ENST00000459979 ZNF861PO60384 105 aa11.18□□□□□ -0.62
HOXD3-204ENST00000459979 HIST1H2BKO60814 126 aa11.17□□□□□ -0.62
HOXD3-204ENST00000459979 HIST1H2BJP06899 126 aa11.17□□□□□ -0.62
HOXD3-204ENST00000459979 HIST1H2BOP23527 126 aa11.17□□□□□ -0.62
HOXD3-204ENST00000459979 PLNP26678 52 aa11.17□□□□□ -0.62
HOXD3-204ENST00000459979 HIST1H2BBP33778 126 aa11.17□□□□□ -0.62
HOXD3-204ENST00000459979 HIST1H2BDP58876 126 aa11.17□□□□□ -0.62
HOXD3-204ENST00000459979 HIST1H2BCP62807 126 aa11.17□□□□□ -0.62
HOXD3-204ENST00000459979 HIST2H2BEQ16778 126 aa11.17□□□□□ -0.62
HOXD3-204ENST00000459979 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms