RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 K7EP13 123 aa7.28□□□□□ -1.24
SCN9A-205ENST00000454569 LEPROTO15243 131 aa7.28□□□□□ -1.24
SCN9A-205ENST00000454569 LGALS3P17931 250 aaKnown RBP7.28□□□□□ -1.24
SCN9A-205ENST00000454569 Q6ZRN7 208 aaPredicted RBP7.28□□□□□ -1.24
SCN9A-205ENST00000454569 ZNF815PA8K554 130 aa7.27□□□□□ -1.25
SCN9A-205ENST00000454569 J3QQQ9 107 aa7.27□□□□□ -1.25
SCN9A-205ENST00000454569 WFDC2Q14508 124 aa7.27□□□□□ -1.25
SCN9A-205ENST00000454569 C2orf91Q6ZV80 131 aa7.27□□□□□ -1.25
SCN9A-205ENST00000454569 PLEKHB2Q96CS7 222 aa7.27□□□□□ -1.25
SCN9A-205ENST00000454569 C1orf43Q9BWL3 253 aa7.27□□□□□ -1.25
SCN9A-205ENST00000454569 RYR3Q15413 4870 aa7.27□□□□□ -1.25
SCN9A-205ENST00000454569 A0A087WZ39 114 aa7.26□□□□□ -1.25
SCN9A-205ENST00000454569 IGHV1-58A0A0C4DH39 117 aa7.26□□□□□ -1.25
SCN9A-205ENST00000454569 LCE6AA0A183 80 aa7.26□□□□□ -1.25
SCN9A-205ENST00000454569 MYMXA0A1B0GTQ4 84 aa7.26□□□□□ -1.25
SCN9A-205ENST00000454569 SMIM1B2RUZ4 78 aa7.26□□□□□ -1.25
SCN9A-205ENST00000454569 TSPEAR-AS2P59090 65 aa7.26□□□□□ -1.25
SCN9A-205ENST00000454569 LINC00526Q96FQ7 95 aa7.26□□□□□ -1.25
SCN9A-205ENST00000454569 LECT2O14960 151 aa7.25□□□□□ -1.25
SCN9A-205ENST00000454569 TTC32Q5I0X7 151 aa7.25□□□□□ -1.25
SCN9A-205ENST00000454569 M0R143 59 aa7.25□□□□□ -1.25
SCN9A-205ENST00000454569 COX7A2LO14548 114 aa7.25□□□□□ -1.25
SCN9A-205ENST00000454569 C15orf56Q8N910 161 aa7.25□□□□□ -1.25
SCN9A-205ENST00000454569 HIGD1BQ9P298 99 aa7.25□□□□□ -1.25
SCN9A-205ENST00000454569 IGLV5-39A0A0G2JS06 123 aa7.24□□□□□ -1.25
SCN9A-205ENST00000454569 BATFQ16520 125 aa7.24□□□□□ -1.25
SCN9A-205ENST00000454569 SCGB1D4Q6XE38 83 aa7.24□□□□□ -1.25
SCN9A-205ENST00000454569 SNHG12Q9BXW3 62 aa7.24□□□□□ -1.25
SCN9A-205ENST00000454569 HINT1P49773 126 aaPredicted RBP7.23□□□□□ -1.25
SCN9A-205ENST00000454569 KIAA0087Q14695 138 aa7.23□□□□□ -1.25
SCN9A-205ENST00000454569 C6orf223Q8N319 242 aa7.23□□□□□ -1.25
SCN9A-205ENST00000454569 DNAH11Q96DT5 4516 aa7.23□□□□□ -1.25
SCN9A-205ENST00000454569 FAT2Q9NYQ8 4349 aa7.23□□□□□ -1.25
SCN9A-205ENST00000454569 HECTD4Q9Y4D8 3996 aa7.22□□□□□ -1.25
SCN9A-205ENST00000454569 C9orf118A6NHY6 69 aa7.22□□□□□ -1.25
SCN9A-205ENST00000454569 HSD52Q0P140 79 aa7.22□□□□□ -1.25
SCN9A-205ENST00000454569 HIGD2BQ4VC39 106 aa7.22□□□□□ -1.25
SCN9A-205ENST00000454569 LRCOL1A6NCL2 159 aa7.21□□□□□ -1.25
SCN9A-205ENST00000454569 USP17L23D6RBM5 183 aa7.21□□□□□ -1.25
SCN9A-205ENST00000454569 ORAOV1Q8WV07 137 aa7.21□□□□□ -1.25
SCN9A-205ENST00000454569 TOMM7Q9P0U1 55 aa7.21□□□□□ -1.25
SCN9A-205ENST00000454569 RTL8CO15255 209 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 SLPIP03973 132 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 RNF151Q2KHN1 245 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 C1orf134Q5TEV5 83 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 C2orf82Q6UX34 121 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 RMI2Q96E14 147 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 NDUFA12Q9UI09 145 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 PSCAO43653 123 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 C10orf25Q5T742 122 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 LINC01561Q8N1V8 128 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 COX7B2Q8TF08 81 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 HIST1H4GQ99525 98 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 TM2D2Q9BX73 214 aa7.2□□□□□ -1.26
SCN9A-205ENST00000454569 NDUFA1O15239 70 aa7.19□□□□□ -1.26
SCN9A-205ENST00000454569 FUSP35637 526 aaKnown RBP eCLIP7.19□□□□□ -1.26
SCN9A-205ENST00000454569 TAL2Q16559 108 aa7.19□□□□□ -1.26
SCN9A-205ENST00000454569 BVES-AS1Q5T3Y7 98 aa7.19□□□□□ -1.26
SCN9A-205ENST00000454569 PKD1P98161 4303 aa7.18□□□□□ -1.26
SCN9A-205ENST00000454569 GCSHP23434 173 aa7.18□□□□□ -1.26
SCN9A-205ENST00000454569 SPAG11BQ08648 103 aa7.18□□□□□ -1.26
SCN9A-205ENST00000454569 NTN5Q8WTR8 489 aaPredicted RBP7.18□□□□□ -1.26
SCN9A-205ENST00000454569 A0A0J9YXY3 114 aa7.17□□□□□ -1.26
SCN9A-205ENST00000454569 A0A1B0GV72 72 aa7.17□□□□□ -1.26
SCN9A-205ENST00000454569 SCGB1A1P11684 91 aa7.17□□□□□ -1.26
SCN9A-205ENST00000454569 SRSF9Q13242 221 aaKnown RBP eCLIP7.17□□□□□ -1.26
SCN9A-205ENST00000454569 UNQ6190/PRO20217Q6UXQ8 127 aa7.17□□□□□ -1.26
SCN9A-205ENST00000454569 Q8IZM0 81 aa7.17□□□□□ -1.26
SCN9A-205ENST00000454569 ZNF625Q96I27 306 aaPredicted RBP7.17□□□□□ -1.26
SCN9A-205ENST00000454569 SPANXB1Q9NS25 103 aaPredicted RBP7.17□□□□□ -1.26
SCN9A-205ENST00000454569 COX11Q9Y6N1 276 aa7.17□□□□□ -1.26
SCN9A-205ENST00000454569 DNAH5Q8TE73 4624 aa7.17□□□□□ -1.26
SCN9A-205ENST00000454569 GVQW2A0A096LPI5 108 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-205ENST00000454569 C6orf226Q5I0X4 101 aa7.16□□□□□ -1.26
SCN9A-205ENST00000454569 COL5A1-AS1Q5SY13 56 aa7.16□□□□□ -1.26
SCN9A-205ENST00000454569 CEND1Q8N111 149 aa7.16□□□□□ -1.26
SCN9A-205ENST00000454569 A0A087WTM6 91 aa7.16□□□□□ -1.26
SCN9A-205ENST00000454569 APOMO95445 188 aa7.16□□□□□ -1.26
SCN9A-205ENST00000454569 PRSS2P07478 247 aa7.16□□□□□ -1.26
SCN9A-205ENST00000454569 HERV-K104P63124 156 aa7.16□□□□□ -1.26
SCN9A-205ENST00000454569 C9orf116Q5BN46 136 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-205ENST00000454569 VPS25Q9BRG1 176 aa7.16□□□□□ -1.26
SCN9A-205ENST00000454569 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.15□□□□□ -1.27
SCN9A-205ENST00000454569 A6NDN8 102 aa7.15□□□□□ -1.27
SCN9A-205ENST00000454569 PTTG1IPP53801 180 aa7.15□□□□□ -1.27
SCN9A-205ENST00000454569 SFTA2Q6UW10 78 aa7.15□□□□□ -1.27
SCN9A-205ENST00000454569 Q6ZRU5 148 aa7.15□□□□□ -1.27
SCN9A-205ENST00000454569 TIMM17BO60830 172 aa7.14□□□□□ -1.27
SCN9A-205ENST00000454569 FXYD2P54710 66 aa7.14□□□□□ -1.27
SCN9A-205ENST00000454569 CIRBPQ14011 172 aaKnown RBP7.14□□□□□ -1.27
SCN9A-205ENST00000454569 MEIG1Q5JSS6 88 aa7.14□□□□□ -1.27
SCN9A-205ENST00000454569 C6orf48Q9UBA6 75 aa7.14□□□□□ -1.27
SCN9A-205ENST00000454569 LITAFQ99732 161 aa7.13□□□□□ -1.27
SCN9A-205ENST00000454569 A0A0U1RRA0 63 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 LINC01620Q4KN68 170 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 Q8N814 137 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 CAMK2N2Q96S95 79 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 SPANXDQ9BXN6 97 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 SPANXCQ9NY87 97 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 FAM30AQ9NZY2 134 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms