RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 A0A0J9YXV3 536 aa5.67□□□□□ -1.5
COL28A1-205ENST00000453441 NDUFA6P56556 154 aa5.67□□□□□ -1.5
COL28A1-205ENST00000453441 SPAG11BQ08648 103 aa5.67□□□□□ -1.5
COL28A1-205ENST00000453441 FAM19A2Q8N3H0 131 aa5.67□□□□□ -1.5
COL28A1-205ENST00000453441 LINC00469Q8N7U9 141 aa5.67□□□□□ -1.5
COL28A1-205ENST00000453441 C9orf163Q8N9P6 203 aa5.67□□□□□ -1.5
COL28A1-205ENST00000453441 B5MCH6 92 aa5.66□□□□□ -1.5
COL28A1-205ENST00000453441 F8VRH5 84 aa5.66□□□□□ -1.5
COL28A1-205ENST00000453441 HIGD2BQ4VC39 106 aa5.66□□□□□ -1.5
COL28A1-205ENST00000453441 ZC2HC1BQ5TFG8 222 aa5.66□□□□□ -1.5
COL28A1-205ENST00000453441 ORAOV1Q8WV07 137 aa5.66□□□□□ -1.5
COL28A1-205ENST00000453441 CHAC1Q9BUX1 264 aa5.66□□□□□ -1.5
COL28A1-205ENST00000453441 MAP1LC3CQ9BXW4 147 aa5.66□□□□□ -1.5
COL28A1-205ENST00000453441 CHTOPQ9Y3Y2 248 aaKnown RBP5.66□□□□□ -1.5
COL28A1-205ENST00000453441 IGLV4-69A0A075B6H9 119 aa5.65□□□□□ -1.5
COL28A1-205ENST00000453441 PRSS2P07478 247 aa5.65□□□□□ -1.5
COL28A1-205ENST00000453441 CXCL5P42830 114 aa5.65□□□□□ -1.5
COL28A1-205ENST00000453441 COX6A2Q02221 97 aa5.65□□□□□ -1.5
COL28A1-205ENST00000453441 SYCNQ0VAF6 134 aa5.65□□□□□ -1.5
COL28A1-205ENST00000453441 Q8IZM0 81 aa5.65□□□□□ -1.5
COL28A1-205ENST00000453441 CARD19Q96LW7 228 aa5.65□□□□□ -1.5
COL28A1-205ENST00000453441 CAMK2N2Q96S95 79 aa5.65□□□□□ -1.5
COL28A1-205ENST00000453441 CDKN2A-AS1Q9UH64 79 aa5.65□□□□□ -1.5
COL28A1-205ENST00000453441 NDUFA1O15239 70 aa5.64□□□□□ -1.51
COL28A1-205ENST00000453441 NUPR1O60356 82 aa5.64□□□□□ -1.51
COL28A1-205ENST00000453441 CDK2AP2O75956 126 aa5.64□□□□□ -1.51
COL28A1-205ENST00000453441 PLNP26678 52 aa5.64□□□□□ -1.51
COL28A1-205ENST00000453441 AKR1D1P51857 326 aa5.64□□□□□ -1.51
COL28A1-205ENST00000453441 SFTA2Q6UW10 78 aa5.64□□□□□ -1.51
COL28A1-205ENST00000453441 MRPL35Q9NZE8 188 aaKnown RBP5.64□□□□□ -1.51
COL28A1-205ENST00000453441 DNAH8Q96JB1 4490 aa5.64□□□□□ -1.51
COL28A1-205ENST00000453441 SMIM1B2RUZ4 78 aa5.63□□□□□ -1.51
COL28A1-205ENST00000453441 S100A6P06703 90 aa5.63□□□□□ -1.51
COL28A1-205ENST00000453441 FABP4P15090 132 aa5.63□□□□□ -1.51
COL28A1-205ENST00000453441 TRBV30A0A0K0K1B3 111 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 C11orf86A6NJI1 115 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 ZNF22P17026 224 aaPredicted RBP5.62□□□□□ -1.51
COL28A1-205ENST00000453441 KRTAP10-1P60331 282 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 CKS1BP61024 79 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 KIAA0087Q14695 138 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 ODF1Q14990 250 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 C6orf226Q5I0X4 101 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 KRTAP5-3Q6L8H2 238 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 PET117Q6UWS5 81 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 Q6ZSA8 131 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 LINC00474Q9P2X8 69 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 APOBP04114 4563 aaKnown RBP5.62□□□□□ -1.51
COL28A1-205ENST00000453441 RYR1P21817 5038 aa5.62□□□□□ -1.51
COL28A1-205ENST00000453441 IGLV5-39A0A0G2JS06 123 aa5.61□□□□□ -1.51
COL28A1-205ENST00000453441 LOC107984640A0A0U1RRK4 108 aa5.61□□□□□ -1.51
COL28A1-205ENST00000453441 SYS1-DBNDD2H3BUS1 97 aa5.61□□□□□ -1.51
COL28A1-205ENST00000453441 DPM2O94777 84 aa5.61□□□□□ -1.51
COL28A1-205ENST00000453441 TMEM170BQ5T4T1 132 aa5.61□□□□□ -1.51
COL28A1-205ENST00000453441 SDIM1Q6ZPB5 146 aa5.61□□□□□ -1.51
COL28A1-205ENST00000453441 Q6ZRU5 148 aa5.61□□□□□ -1.51
COL28A1-205ENST00000453441 COX7B2Q8TF08 81 aa5.61□□□□□ -1.51
COL28A1-205ENST00000453441 TOMM7Q9P0U1 55 aa5.61□□□□□ -1.51
COL28A1-205ENST00000453441 C20orf202A1L168 122 aa5.6□□□□□ -1.51
COL28A1-205ENST00000453441 H0Y8G0 127 aa5.6□□□□□ -1.51
COL28A1-205ENST00000453441 SPINK8P0C7L1 97 aa5.6□□□□□ -1.51
COL28A1-205ENST00000453441 TLX1NBP0CAT3 122 aa5.6□□□□□ -1.51
COL28A1-205ENST00000453441 S100A2P29034 98 aa5.6□□□□□ -1.51
COL28A1-205ENST00000453441 FUSP35637 526 aaKnown RBP eCLIP5.6□□□□□ -1.51
COL28A1-205ENST00000453441 HERVK_113P61574 105 aa5.6□□□□□ -1.51
COL28A1-205ENST00000453441 TMEM223A0PJW6 202 aa5.59□□□□□ -1.51
COL28A1-205ENST00000453441 IGKCP01834 107 aa5.59□□□□□ -1.51
COL28A1-205ENST00000453441 CIRBPQ14011 172 aaKnown RBP5.59□□□□□ -1.51
COL28A1-205ENST00000453441 LINC00526Q96FQ7 95 aa5.59□□□□□ -1.51
COL28A1-205ENST00000453441 KIAA1109Q2LD37 5005 aa5.59□□□□□ -1.52
COL28A1-205ENST00000453441 LINC01620Q4KN68 170 aa5.58□□□□□ -1.52
COL28A1-205ENST00000453441 LINC01545Q5VT33 79 aa5.58□□□□□ -1.52
COL28A1-205ENST00000453441 UNQ6190/PRO20217Q6UXQ8 127 aa5.58□□□□□ -1.52
COL28A1-205ENST00000453441 HIST3H2BBQ8N257 126 aa5.58□□□□□ -1.52
COL28A1-205ENST00000453441 FAM30AQ9NZY2 134 aa5.58□□□□□ -1.52
COL28A1-205ENST00000453441 C6orf48Q9UBA6 75 aa5.58□□□□□ -1.52
COL28A1-205ENST00000453441 NDUFC2-KCTD14E9PQ53 114 aa5.57□□□□□ -1.52
COL28A1-205ENST00000453441 C3orf79P0CE67 100 aa5.57□□□□□ -1.52
COL28A1-205ENST00000453441 PTTG1IPP53801 180 aa5.57□□□□□ -1.52
COL28A1-205ENST00000453441 KRTDAPP60985 99 aa5.57□□□□□ -1.52
COL28A1-205ENST00000453441 SPACA4Q8TDM5 124 aa5.57□□□□□ -1.52
COL28A1-205ENST00000453441 PLEKHB2Q96CS7 222 aa5.57□□□□□ -1.52
COL28A1-205ENST00000453441 LINC00587B1AMM8 73 aa5.56□□□□□ -1.52
COL28A1-205ENST00000453441 COX17Q14061 63 aa5.56□□□□□ -1.52
COL28A1-205ENST00000453441 C10orf25Q5T742 122 aa5.56□□□□□ -1.52
COL28A1-205ENST00000453441 C2orf82Q6UX34 121 aa5.56□□□□□ -1.52
COL28A1-205ENST00000453441 HIST1H2BLQ99880 126 aa5.56□□□□□ -1.52
COL28A1-205ENST00000453441 HERC2O95714 4834 aa5.56□□□□□ -1.52
COL28A1-205ENST00000453441 HSPG2P98160 4391 aa5.55□□□□□ -1.52
COL28A1-205ENST00000453441 A0A096LNI7 61 aa5.55□□□□□ -1.52
COL28A1-205ENST00000453441 C5orf52A6NGY3 159 aa5.55□□□□□ -1.52
COL28A1-205ENST00000453441 LEPROTO15243 131 aa5.55□□□□□ -1.52
COL28A1-205ENST00000453441 NMUP48645 174 aa5.55□□□□□ -1.52
COL28A1-205ENST00000453441 XGP55808 180 aa5.55□□□□□ -1.52
COL28A1-205ENST00000453441 SNRPEP62304 92 aaKnown RBP5.55□□□□□ -1.52
COL28A1-205ENST00000453441 HERV-K104P63124 156 aa5.55□□□□□ -1.52
COL28A1-205ENST00000453441 RPL18AQ02543 176 aaKnown RBP5.55□□□□□ -1.52
COL28A1-205ENST00000453441 SCXQ7RTU7 201 aa5.55□□□□□ -1.52
COL28A1-205ENST00000453441 DPH3Q96FX2 82 aa5.55□□□□□ -1.52
COL28A1-205ENST00000453441 IGKV2-24A0A0C4DH68 120 aa5.54□□□□□ -1.52
COL28A1-205ENST00000453441 MYMXA0A1B0GTQ4 84 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms