RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 LINC00959A0A1B0GUT2 108 aa9.55□□□□□ -0.88
USP40-208ENST00000450966 C2orf48Q96LS8 159 aa9.55□□□□□ -0.88
USP40-208ENST00000450966 A8MUN3 132 aa9.54□□□□□ -0.88
USP40-208ENST00000450966 EXPH5Q8NEV8 1989 aa9.54□□□□□ -0.88
USP40-208ENST00000450966 CUL9Q8IWT3 2517 aa9.54□□□□□ -0.88
USP40-208ENST00000450966 SMIM29Q86T20 159 aa9.54□□□□□ -0.88
USP40-208ENST00000450966 ANKHD1Q8IWZ3 2542 aaKnown RBP9.54□□□□□ -0.88
USP40-208ENST00000450966 BRI3O95415 125 aa9.53□□□□□ -0.88
USP40-208ENST00000450966 PLXNB1O43157 2135 aa9.53□□□□□ -0.88
USP40-208ENST00000450966 PCOTHQ58A44 107 aa9.53□□□□□ -0.88
USP40-208ENST00000450966 TM2D3Q9BRN9 247 aa9.53□□□□□ -0.88
USP40-208ENST00000450966 LINC00337Q8N6G1 96 aa9.52□□□□□ -0.89
USP40-208ENST00000450966 C1orf64Q8NEQ6 169 aa9.52□□□□□ -0.89
USP40-208ENST00000450966 NCOA6Q14686 2063 aaPredicted RBP9.52□□□□□ -0.89
USP40-208ENST00000450966 PIEZO1Q92508 2521 aa9.52□□□□□ -0.89
USP40-208ENST00000450966 MRGPRG-AS1Q2M3A8 158 aa9.52□□□□□ -0.89
USP40-208ENST00000450966 EML5Q05BV3 1969 aa9.52□□□□□ -0.89
USP40-208ENST00000450966 FREM1Q5H8C1 2179 aa9.52□□□□□ -0.89
USP40-208ENST00000450966 IGLV1-40P01703 118 aa9.52□□□□□ -0.89
USP40-208ENST00000450966 SONP18583 2426 aaKnown RBP9.51□□□□□ -0.89
USP40-208ENST00000450966 CHCHD7Q9BUK0 85 aa9.51□□□□□ -0.89
USP40-208ENST00000450966 H7BZZ5 65 aa9.51□□□□□ -0.89
USP40-208ENST00000450966 SYCNQ0VAF6 134 aa9.51□□□□□ -0.89
USP40-208ENST00000450966 A0A1B0GW54 56 aa9.5□□□□□ -0.89
USP40-208ENST00000450966 A0A096LNI7 61 aa9.5□□□□□ -0.89
USP40-208ENST00000450966 A0A1B0GU69 56 aa9.5□□□□□ -0.89
USP40-208ENST00000450966 COX6A2Q02221 97 aa9.5□□□□□ -0.89
USP40-208ENST00000450966 CSPG4Q6UVK1 2322 aa9.5□□□□□ -0.89
USP40-208ENST00000450966 LOC110117498A0A087WWA1 95 aa9.5□□□□□ -0.89
USP40-208ENST00000450966 C9orf116Q5BN46 136 aaPredicted RBP9.5□□□□□ -0.89
USP40-208ENST00000450966 ZNF706Q9Y5V0 76 aaPredicted RBP9.49□□□□□ -0.89
USP40-208ENST00000450966 WNK1Q9H4A3 2382 aa9.49□□□□□ -0.89
USP40-208ENST00000450966 IGHV4-30-4P0DP06 118 aa9.49□□□□□ -0.89
USP40-208ENST00000450966 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.49□□□□□ -0.89
USP40-208ENST00000450966 LRP4O75096 1905 aa9.49□□□□□ -0.89
USP40-208ENST00000450966 CACNA1AO00555 2505 aa9.48□□□□□ -0.89
USP40-208ENST00000450966 H3BS24 57 aa9.48□□□□□ -0.89
USP40-208ENST00000450966 PTPRSQ13332 1948 aa9.48□□□□□ -0.89
USP40-208ENST00000450966 SPATA3Q8NHX4 192 aa9.48□□□□□ -0.89
USP40-208ENST00000450966 PTPN13Q12923 2485 aa9.47□□□□□ -0.89
USP40-208ENST00000450966 Q9UF83 564 aa9.47□□□□□ -0.89
USP40-208ENST00000450966 FAM218AQ96MZ4 157 aa9.46□□□□□ -0.89
USP40-208ENST00000450966 DSCAMO60469 2012 aa9.46□□□□□ -0.89
USP40-208ENST00000450966 ATG2AQ2TAZ0 1938 aa9.46□□□□□ -0.89
USP40-208ENST00000450966 Q6ZQT0 140 aa9.46□□□□□ -0.89
USP40-208ENST00000450966 PRR14LQ5THK1 2151 aa9.46□□□□□ -0.9
USP40-208ENST00000450966 Q8N2B8 174 aa9.46□□□□□ -0.9
USP40-208ENST00000450966 IGKV2-28A0A075B6P5 120 aa9.45□□□□□ -0.9
USP40-208ENST00000450966 IGKV2D-28P01615 120 aa9.45□□□□□ -0.9
USP40-208ENST00000450966 TRAV22A0A0B4J277 110 aa9.45□□□□□ -0.9
USP40-208ENST00000450966 IGLV5-39A0A0G2JS06 123 aa9.45□□□□□ -0.9
USP40-208ENST00000450966 BBC3Q96PG8 261 aaPredicted RBP9.45□□□□□ -0.9
USP40-208ENST00000450966 KPRPQ5T749 579 aaPredicted RBP9.44□□□□□ -0.9
USP40-208ENST00000450966 LOC101927531A0A1B0GV80 90 aa9.44□□□□□ -0.9
USP40-208ENST00000450966 C10orf99Q6UWK7 81 aa9.43□□□□□ -0.9
USP40-208ENST00000450966 LELP1Q5T871 98 aa9.43□□□□□ -0.9
USP40-208ENST00000450966 SORL1Q92673 2214 aa9.43□□□□□ -0.9
USP40-208ENST00000450966 RBM12B-AS1Q9P1G2 102 aa9.43□□□□□ -0.9
USP40-208ENST00000450966 KRTAP10-9P60411 292 aa9.42□□□□□ -0.9
USP40-208ENST00000450966 ELOF1P60002 83 aaKnown RBP9.42□□□□□ -0.9
USP40-208ENST00000450966 LY6G6CO95867 125 aa9.41□□□□□ -0.9
USP40-208ENST00000450966 PRR3P79522 188 aaKnown RBP9.41□□□□□ -0.9
USP40-208ENST00000450966 CDSNQ15517 529 aa9.4□□□□□ -0.9
USP40-208ENST00000450966 M0R2N4 97 aa9.4□□□□□ -0.9
USP40-208ENST00000450966 C6orf223Q8N319 242 aa9.4□□□□□ -0.9
USP40-208ENST00000450966 SPINT4Q6UDR6 99 aa9.4□□□□□ -0.91
USP40-208ENST00000450966 TP53AIP1Q9HCN2 124 aa9.4□□□□□ -0.91
USP40-208ENST00000450966 CYSRT1A8MQ03 144 aa9.39□□□□□ -0.91
USP40-208ENST00000450966 ACYP2P14621 99 aa9.39□□□□□ -0.91
USP40-208ENST00000450966 Q5XG85 94 aa9.39□□□□□ -0.91
USP40-208ENST00000450966 IGLV1-51P01701 117 aa9.38□□□□□ -0.91
USP40-208ENST00000450966 EGFEM1PQ0D2K5 195 aa9.37□□□□□ -0.91
USP40-208ENST00000450966 Q6ZTC4 211 aa9.37□□□□□ -0.91
USP40-208ENST00000450966 C11orf72Q8NBR9 251 aa9.35□□□□□ -0.91
USP40-208ENST00000450966 MYO18BQ8IUG5 2567 aa9.35□□□□□ -0.91
USP40-208ENST00000450966 PRRC2AP48634 2157 aaKnown RBP9.35□□□□□ -0.91
USP40-208ENST00000450966 KIF25-AS1Q9Y6Z4 181 aa9.35□□□□□ -0.91
USP40-208ENST00000450966 IGLV5-45A0A087WSX0 123 aa9.35□□□□□ -0.91
USP40-208ENST00000450966 AVPP01185 164 aa9.35□□□□□ -0.91
USP40-208ENST00000450966 SPINK6Q6UWN8 80 aa9.35□□□□□ -0.91
USP40-208ENST00000450966 UNQ6190/PRO20217Q6UXQ8 127 aa9.35□□□□□ -0.91
USP40-208ENST00000450966 A0A087WSZ3 146 aa9.34□□□□□ -0.91
USP40-208ENST00000450966 NAV3Q8IVL0 2385 aa9.34□□□□□ -0.91
USP40-208ENST00000450966 SMR3AQ99954 134 aa9.34□□□□□ -0.91
USP40-208ENST00000450966 NAV2Q8IVL1 2488 aa9.34□□□□□ -0.91
USP40-208ENST00000450966 C18orf65Q6ZTR6 163 aa9.33□□□□□ -0.92
USP40-208ENST00000450966 CDC42SE1Q9NRR8 79 aa9.33□□□□□ -0.92
USP40-208ENST00000450966 Q1T7F1 81 aa9.33□□□□□ -0.92
USP40-208ENST00000450966 HIVEP3Q5T1R4 2406 aa9.33□□□□□ -0.92
USP40-208ENST00000450966 COA5Q86WW8 74 aa9.32□□□□□ -0.92
USP40-208ENST00000450966 LOC100131303A0A0U1RQF7 123 aa9.32□□□□□ -0.92
USP40-208ENST00000450966 DEFB116Q30KQ4 102 aa9.32□□□□□ -0.92
USP40-208ENST00000450966 FSHBP01225 129 aa9.32□□□□□ -0.92
USP40-208ENST00000450966 LINC01600Q96MT4 127 aa9.32□□□□□ -0.92
USP40-208ENST00000450966 ADAMTS20P59510 1910 aa9.31□□□□□ -0.92
USP40-208ENST00000450966 LITAFQ99732 161 aa9.31□□□□□ -0.92
USP40-208ENST00000450966 RPL37AP8A6NKH3 93 aa9.31□□□□□ -0.92
USP40-208ENST00000450966 IGHV6-1A0A0B4J1U7 121 aa9.29□□□□□ -0.92
USP40-208ENST00000450966 C6orf48Q9UBA6 75 aa9.28□□□□□ -0.92
USP40-208ENST00000450966 UQCR11O14957 56 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms