RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 COX6A2Q02221 97 aa4.28□□□□□ -1.72
MCF2-205ENST00000437564 Q8NDZ9 215 aa4.28□□□□□ -1.72
MCF2-205ENST00000437564 DEFB104AQ8WTQ1 72 aa4.28□□□□□ -1.72
MCF2-205ENST00000437564 PLCE1Q9P212 2302 aa4.28□□□□□ -1.72
MCF2-205ENST00000437564 TRGV4A0A0C4DH28 118 aa4.27□□□□□ -1.73
MCF2-205ENST00000437564 IGLV1-44P01699 117 aa4.27□□□□□ -1.73
MCF2-205ENST00000437564 DEFB112Q30KQ8 113 aa4.27□□□□□ -1.73
MCF2-205ENST00000437564 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.27□□□□□ -1.73
MCF2-205ENST00000437564 Q8N9L7 120 aa4.27□□□□□ -1.73
MCF2-205ENST00000437564 PATE1Q8WXA2 126 aa4.27□□□□□ -1.73
MCF2-205ENST00000437564 PTPRQQ9UMZ3 2332 aa4.27□□□□□ -1.73
MCF2-205ENST00000437564 IGLV7-46A0A075B6I9 117 aa4.27□□□□□ -1.73
MCF2-205ENST00000437564 IGHV3-20A0A0C4DH32 117 aa4.27□□□□□ -1.73
MCF2-205ENST00000437564 IGHV1-2P23083 117 aa4.27□□□□□ -1.73
MCF2-205ENST00000437564 REG3GQ6UW15 175 aa4.27□□□□□ -1.73
MCF2-205ENST00000437564 PATE3B3GLJ2 98 aa4.26□□□□□ -1.73
MCF2-205ENST00000437564 CXCL17Q6UXB2 119 aa4.26□□□□□ -1.73
MCF2-205ENST00000437564 PRRC2BQ5JSZ5 2229 aaKnown RBP4.26□□□□□ -1.73
MCF2-205ENST00000437564 IGHV4-30-2A0A087WSY4 118 aa4.25□□□□□ -1.73
MCF2-205ENST00000437564 IGLV9-49A0A0B4J1Y8 123 aa4.25□□□□□ -1.73
MCF2-205ENST00000437564 PRB2P02812 416 aaPredicted RBP4.25□□□□□ -1.73
MCF2-205ENST00000437564 MSMBP08118 114 aa4.25□□□□□ -1.73
MCF2-205ENST00000437564 APELAP0DMC3 54 aa4.25□□□□□ -1.73
MCF2-205ENST00000437564 C10orf25Q5T742 122 aa4.25□□□□□ -1.73
MCF2-205ENST00000437564 ST20-AS1Q8NBB2 130 aa4.25□□□□□ -1.73
MCF2-205ENST00000437564 SPATA8Q6RVD6 105 aa4.25□□□□□ -1.73
MCF2-205ENST00000437564 PLA2G2AP14555 144 aa4.24□□□□□ -1.73
MCF2-205ENST00000437564 MRPS21P82921 87 aaKnown RBP4.24□□□□□ -1.73
MCF2-205ENST00000437564 C9orf163Q8N9P6 203 aa4.24□□□□□ -1.73
MCF2-205ENST00000437564 WWC2-AS2Q96NR7 200 aa4.24□□□□□ -1.73
MCF2-205ENST00000437564 LINC00959A0A1B0GUT2 108 aa4.23□□□□□ -1.73
MCF2-205ENST00000437564 IGHV3-23P01764 117 aa4.23□□□□□ -1.73
MCF2-205ENST00000437564 NPBQ8NG41 125 aa4.23□□□□□ -1.73
MCF2-205ENST00000437564 ZNRD1Q9P1U0 126 aa4.23□□□□□ -1.73
MCF2-205ENST00000437564 CR1P17927 2039 aa4.23□□□□□ -1.73
MCF2-205ENST00000437564 A0A087WSZ3 146 aa4.23□□□□□ -1.73
MCF2-205ENST00000437564 INAFM1C9JVW0 142 aa4.23□□□□□ -1.73
MCF2-205ENST00000437564 IGHV4-30-4P0DP06 118 aa4.23□□□□□ -1.73
MCF2-205ENST00000437564 KLK9Q2XQG4 91 aa4.22□□□□□ -1.73
MCF2-205ENST00000437564 BRWD1Q9NSI6 2320 aa4.22□□□□□ -1.73
MCF2-205ENST00000437564 CHTF8P0CG12 524 aa4.22□□□□□ -1.73
MCF2-205ENST00000437564 DSCR9P59020 149 aa4.22□□□□□ -1.73
MCF2-205ENST00000437564 COX17Q14061 63 aa4.22□□□□□ -1.73
MCF2-205ENST00000437564 Q6ZQY7 126 aa4.22□□□□□ -1.73
MCF2-205ENST00000437564 ZNF318Q5VUA4 2279 aa4.21□□□□□ -1.74
MCF2-205ENST00000437564 KRTAP25-1Q3LHN0 102 aa4.2□□□□□ -1.74
MCF2-205ENST00000437564 SPINK14Q6IE38 97 aa4.2□□□□□ -1.74
MCF2-205ENST00000437564 SORL1Q92673 2214 aa4.2□□□□□ -1.74
MCF2-205ENST00000437564 URB1O60287 2271 aaKnown RBP4.2□□□□□ -1.74
MCF2-205ENST00000437564 IGHV3-74A0A0B4J1X5 117 aa4.2□□□□□ -1.74
MCF2-205ENST00000437564 IGHV3-11P01762 117 aa4.2□□□□□ -1.74
MCF2-205ENST00000437564 K7ERS5 55 aa4.19□□□□□ -1.74
MCF2-205ENST00000437564 P0C880 135 aa4.19□□□□□ -1.74
MCF2-205ENST00000437564 CMC4P56277 68 aaPredicted RBP4.19□□□□□ -1.74
MCF2-205ENST00000437564 LCE4AQ5TA78 99 aa4.19□□□□□ -1.74
MCF2-205ENST00000437564 SPRR4Q96PI1 79 aa4.19□□□□□ -1.74
MCF2-205ENST00000437564 GOLGB1Q14789 3259 aaKnown RBP4.18□□□□□ -1.74
MCF2-205ENST00000437564 UQCR11O14957 56 aa4.18□□□□□ -1.74
MCF2-205ENST00000437564 IGKV3-20P01619 116 aa4.18□□□□□ -1.74
MCF2-205ENST00000437564 IGHV1-46P01743 117 aa4.18□□□□□ -1.74
MCF2-205ENST00000437564 COX7A1P24310 79 aa4.18□□□□□ -1.74
MCF2-205ENST00000437564 CCL14Q16627 93 aa4.18□□□□□ -1.74
MCF2-205ENST00000437564 LINC00483Q53H64 154 aa4.18□□□□□ -1.74
MCF2-205ENST00000437564 PRR34Q9NV39 138 aa4.18□□□□□ -1.74
MCF2-205ENST00000437564 LCE5AQ5TCM9 118 aa4.17□□□□□ -1.74
MCF2-205ENST00000437564 DPM3Q9P2X0 92 aa4.17□□□□□ -1.74
MCF2-205ENST00000437564 IGKV2D-24A0A075B6R9 120 aa4.16□□□□□ -1.74
MCF2-205ENST00000437564 SPTY2D1-AS1A0A0U1RR47 76 aa4.16□□□□□ -1.74
MCF2-205ENST00000437564 CCL3L1P16619 93 aa4.16□□□□□ -1.74
MCF2-205ENST00000437564 C1orf137Q5JT78 98 aa4.16□□□□□ -1.74
MCF2-205ENST00000437564 TOMM7Q9P0U1 55 aa4.16□□□□□ -1.74
MCF2-205ENST00000437564 KLK12Q9UKR0 248 aa4.16□□□□□ -1.74
MCF2-205ENST00000437564 ASCC3Q8N3C0 2202 aaKnown RBP4.16□□□□□ -1.74
MCF2-205ENST00000437564 KNL1Q8NG31 2342 aa4.16□□□□□ -1.74
MCF2-205ENST00000437564 SRCAPQ6ZRS2 3230 aa4.16□□□□□ -1.74
MCF2-205ENST00000437564 IGLV10-54A0A075B6I4 117 aa4.16□□□□□ -1.74
MCF2-205ENST00000437564 FAM215AQ9Y5M1 114 aa4.16□□□□□ -1.74
MCF2-205ENST00000437564 LUZP6Q538Z0 58 aa4.15□□□□□ -1.74
MCF2-205ENST00000437564 C20orf166-AS1Q96NR2 134 aa4.15□□□□□ -1.74
MCF2-205ENST00000437564 CAMK2N2Q96S95 79 aa4.15□□□□□ -1.74
MCF2-205ENST00000437564 IGLV1-50A0A075B6I6 118 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 IGHV4-61A0A0C4DH41 118 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 A8MWP4 228 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 ZNF861PO60384 105 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 IGLV6-57P01721 117 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 C8orf17Q9NRJ1 99 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 MED13LQ71F56 2210 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 DEFB131BA0A096LNP1 70 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 DNAJC9-AS1A6NH13 148 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 DSCR10P59022 87 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 Q8IZM0 81 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 DMAC1Q96GE9 116 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 ABCA1O95477 2261 aa4.14□□□□□ -1.75
MCF2-205ENST00000437564 Q8N9W7 124 aa4.13□□□□□ -1.75
MCF2-205ENST00000437564 IGLV5-48A0A075B6I7 105 aa4.13□□□□□ -1.75
MCF2-205ENST00000437564 CSNK1G2-AS1Q8NCQ2 148 aa4.13□□□□□ -1.75
MCF2-205ENST00000437564 SDK1Q7Z5N4 2213 aa4.12□□□□□ -1.75
MCF2-205ENST00000437564 DEFB108BQ8NET1 73 aa4.12□□□□□ -1.75
MCF2-205ENST00000437564 KAAG1Q9UBP8 84 aa4.12□□□□□ -1.75
MCF2-205ENST00000437564 CYSRT1A8MQ03 144 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms